CN188955

Overview
NameCN188955
Unique NameCN188955
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length765
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188955 vs. ExPASy Swiss-Prot
Match: GALK1_ARATH (Galactokinase OS=Arabidopsis thaliana GN=GAL1 PE=2 SV=2)

HSP 1 Score: 219.55 bits (558), Expect = 1.545e-56
Identity = 103/136 (75.74%), Postives = 121/136 (88.97%), Query Frame = -2
Query:  351 YKLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFILNVKEQFYQSRIDRGVINNNDLGLYVFASKPSSGAAKF 758
            +KLHQRAAHVYSEA+RVH FKDTV+SNLS+E+KLKKLGDLMN+SH+SCSVLYECSCPELEELV VC+ NGALGARLTGAGWGGC VALVKE   +QFI  VKE++Y+ R+++GV+   D+ LY+FASKPSSGAA F
Sbjct:  359 FKLHQRAAHVYSEARRVHGFKDTVNSNLSDEEKLKKLGDLMNESHYSCSVLYECSCPELEELVQVCKENGALGARLTGAGWGGCAVALVKEFDVTQFIPAVKEKYYKKRVEKGVVKKEDMELYLFASKPSSGAAIF 494          
BLAST of CN188955 vs. ExPASy Swiss-Prot
Match: GALK2_MOUSE (N-acetylgalactosamine kinase OS=Mus musculus GN=Galk2 PE=1 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.902e-30
Identity = 67/137 (48.91%), Postives = 89/137 (64.96%), Query Frame = -2
Query:  348 YKLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFILNVKEQFYQSRIDRGVINNNDLGLYVFASKPSSGAAKFK 758
            +KL+QRA HVYSEA RV  FK       + ++ ++ LG+LMN SH SC  +YECSCPEL++LV++CR  GA G+RLTGAGWGGC V+LV   + S F+ +V E +YQ    R     + L    FA+KP  GA  F+
Sbjct:  326 FKLYQRAKHVYSEAARVLQFKQVCED--APDNAVQLLGELMNQSHRSCRDMYECSCPELDQLVDICRKFGAKGSRLTGAGWGGCTVSLVPADMLSSFLASVHEAYYQGNTSRLAQEKHSL----FATKPGGGALVFR 456          
BLAST of CN188955 vs. ExPASy Swiss-Prot
Match: GALK2_RAT (N-acetylgalactosamine kinase OS=Rattus norvegicus GN=Galk2 PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.484e-30
Identity = 67/136 (49.26%), Postives = 89/136 (65.44%), Query Frame = -2
Query:  351 YKLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFILNVKEQFYQSRIDRGVINNNDLGLYVFASKPSSGAAKF 758
            +KL+QRA HVYSEA RV  FK    +  + ++ ++ LG+LMN SH SC  +YECSCPEL++LV++CR  GA G+RLTGAGWGGC V+LV     S F+ +V E +YQ  + R     + L    FA+KP  GA  F
Sbjct:  326 FKLYQRAKHVYSEAARVLQFKQVCEA--APDNAVQLLGELMNQSHRSCRDMYECSCPELDQLVDICRKFGAKGSRLTGAGWGGCTVSLVPADTLSSFLASVHEAYYQGNMSRLAREKHSL----FATKPGGGALVF 455          
BLAST of CN188955 vs. ExPASy Swiss-Prot
Match: GALK2_HUMAN (N-acetylgalactosamine kinase OS=Homo sapiens GN=GALK2 PE=1 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.507e-27
Identity = 65/133 (48.87%), Postives = 86/133 (64.66%), Query Frame = -2
Query:  360 YKLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFILNVKEQFYQSRIDRGVINNNDLGLYVFASKPSSGA 758
            +KL+QRA HVYSEA RV  FK       + E+ ++ LG+LMN SH SC  +YECSCPEL++LV++CR  GA G+RLTGAGWGGC V++V       F+ NV + +YQ R D  +         +FA+KP  GA
Sbjct:  326 FKLYQRAKHVYSEAARVLQFKKICEE--APENMVQLLGELMNQSHMSCRDMYECSCPELDQLVDICRKFGAQGSRLTGAGWGGCTVSMVPADKLPSFLANVHKAYYQ-RSDGSLAPEKQ---SLFATKPGGGA 452          
BLAST of CN188955 vs. ExPASy Swiss-Prot
Match: GALK2_PONAB (N-acetylgalactosamine kinase OS=Pongo abelii GN=GALK2 PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 5.726e-27
Identity = 64/133 (48.12%), Postives = 85/133 (63.91%), Query Frame = -2
Query:  360 YKLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFILNVKEQFYQSRIDRGVINNNDLGLYVFASKPSSGA 758
            +KL+QRA HVYSEA RV  FK       + E+ ++ LG+LMN SH SC  +YECSCPEL++LV++CR  GA G+RLTGAGWGGC V++V       F+ NV + +Y  R D  +         +FA+KP  GA
Sbjct:  326 FKLYQRAKHVYSEAARVLQFKKICEE--APENMVQLLGELMNQSHMSCRDMYECSCPELDQLVDICRKFGAQGSRLTGAGWGGCTVSIVPADKLPSFLANVHKAYYH-RSDGSLAPEKQ---SLFATKPGGGA 452          
BLAST of CN188955 vs. ExPASy Swiss-Prot
Match: GALK_DICDI (Galactokinase OS=Dictyostelium discoideum GN=galK PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 6.331e-26
Identity = 58/149 (38.93%), Postives = 88/149 (59.06%), Query Frame = -2
Query:  360 KQYKLHQRAAHVYSEAKRVHAFKDTVS--SNLSEEDK------------LKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFILNVKEQFYQSRIDRGVINNNDLGLYVFASKPSSGA 764
            + ++L++RA HV++E +RV+ F +     SN +  +             +++LG LMN+SH SCS L+ECSC EL+ L  +CR NGALG+RLTGAGWGGCV++LV  S    F+  +   +Y   ++   + N +   Y F + P  GA
Sbjct:  346 EHFELYKRARHVFTETQRVYKFSEICKQQSNFNNNNNNNNNNSSNNTNIIQELGKLMNESHESCSKLFECSCSELDSLTKICRENGALGSRLTGAGWGGCVISLVPNSKVDSFLDAIDTHYYSKFVNPEKLKNIEKSSYSFFTTPCKGA 494          
BLAST of CN188955 vs. ExPASy Swiss-Prot
Match: GAL1_YEAST (Galactokinase OS=Saccharomyces cerevisiae GN=GAL1 PE=1 SV=4)

HSP 1 Score: 105.531 bits (262), Expect = 3.252e-22
Identity = 62/142 (43.66%), Postives = 90/142 (63.38%), Query Frame = -2
Query:  348 KLHQRAAHVYSEAKRV-HAFK-DTVSSNLSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFILNVKE----QFYQSRIDRGVINNNDLGLYVFASKPSSGAAKFK 755
            KL+QRA HVYSE+ RV  A K  T +S  ++ED  K+ G LMN+S  SC  LYECSCPE++++ ++  +NG+ G+RLTGAGWGGC V LV    +   I  VKE    +FY+ +  +  I + +L   +  SKP+ G+  ++
Sbjct:  389 KLYQRAKHVYSESLRVLKAVKLMTTASFTADEDFFKQFGALMNESQASCDKLYECSCPEIDKICSIALSNGSYGSRLTGAGWGGCTVHLVPGGPNGN-IEKVKEALANEFYKVKYPK--ITDAELENAIIVSKPALGSCLYE 527          
BLAST of CN188955 vs. ExPASy Swiss-Prot
Match: GAL1_KLULA (Galactokinase OS=Kluyveromyces lactis GN=GAL1 PE=2 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 2.330e-20
Identity = 55/139 (39.57%), Postives = 74/139 (53.24%), Query Frame = -2
Query:  348 KQYKLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFILNVKEQFYQSRIDRGVINNNDLGLYVFASKPSSGAAKFK 764
            ++ KL QRA HVYSEA RV   K        E +  ++ G LMN+S  SC  LYECSCPE + +  +   NG+ G+RLTGAGWGGC V L            + EQ+Y  R     +   +L   +  SKPS G+  ++
Sbjct:  369 QRLKLFQRAKHVYSEALRV--LKALQLFQKGESNFFEEFGALMNESQESCDKLYECSCPETDSICEIALKNGSFGSRLTGAGWGGCTVHLCSTDTVDSVKSALTEQYYNLRFPE--LTAEELEDAIIISKPSLGSVLYE 503          
BLAST of CN188955 vs. ExPASy Swiss-Prot
Match: GAL3_YEAST (Protein GAL3 OS=Saccharomyces cerevisiae GN=GAL3 PE=1 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 7.496e-19
Identity = 56/141 (39.72%), Postives = 79/141 (56.03%), Query Frame = -2
Query:  348 KLHQRAAHVYSEAKRV-HAFKDTVSSNL-SEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKESID---SQFILNVKEQFYQSRIDRGVINNNDLGLYVFASKPSSGAAKFK 755
            KL+QRA HVYSE+ RV  A K   S+   ++ED     G LMN+S  SC  LYECSC E  ++ ++   NG+ G+RLTGAGWGGC + LV    +    Q    + E+FY  R     + + +L   +  SKP+ G   ++
Sbjct:  381 KLYQRAKHVYSESLRVLKALKMMTSATFHTDEDFFTDFGRLMNESQASCDKLYECSCIETNQICSIALANGSFGSRLTGAGWGGCTIHLVPSGANGNVEQVRKALIEKFYNVRYPD--LTDEELKDAIIVSKPALGTCLYE 519          
BLAST of CN188955 vs. ExPASy Swiss-Prot
Match: GAL1_SCHPO (Galactokinase OS=Schizosaccharomyces pombe GN=gal1 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.567e-15
Identity = 47/138 (34.06%), Postives = 72/138 (52.17%), Query Frame = -2
Query:  360 KQYKLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKL---GDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFILNVKEQFYQSRIDRGVINNNDLGLYVFASKPSSGA 764
            ++ K++QR  HVYS+A RV         +   +D  K +   G L+NDS  S  +    S PEL E+  +   NG  GAR TGAGWGG  V L      ++ +  + EQ+Y+ +  +  I  ++L   V  SKP++G+
Sbjct:  376 ERMKIYQRTVHVYSDAMRVLQVLKLFHQHKDSDDPQKFMLAFGRLLNDSQRSEDIYNNSSSPELREVCKISLANGGYGARTTGAGWGGSAVHLTTHDKLAKLVEALTEQYYKKQFPK--ITQSELNAAVVVSKPAAGS 511          
The following BLAST results are available for this feature:
BLAST of CN188955 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
GALK1_ARATH1.545e-5675.74Galactokinase OS=Arabidopsis thaliana GN=GAL1 PE=2... [more]
GALK2_MOUSE1.902e-3048.91N-acetylgalactosamine kinase OS=Mus musculus GN=Ga... [more]
GALK2_RAT2.484e-3049.26N-acetylgalactosamine kinase OS=Rattus norvegicus ... [more]
GALK2_HUMAN1.507e-2748.87N-acetylgalactosamine kinase OS=Homo sapiens GN=GA... [more]
GALK2_PONAB5.726e-2748.12N-acetylgalactosamine kinase OS=Pongo abelii GN=GA... [more]
GALK_DICDI6.331e-2638.93Galactokinase OS=Dictyostelium discoideum GN=galK ... [more]
GAL1_YEAST3.252e-2243.66Galactokinase OS=Saccharomyces cerevisiae GN=GAL1 ... [more]
GAL1_KLULA2.330e-2039.57Galactokinase OS=Kluyveromyces lactis GN=GAL1 PE=2... [more]
GAL3_YEAST7.496e-1939.72Protein GAL3 OS=Saccharomyces cerevisiae GN=GAL3 P... [more]
GAL1_SCHPO6.567e-1534.06Galactokinase OS=Schizosaccharomyces pombe GN=gal1... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS06_0001B14_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001B14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188955 ID=CN188955; Name=CN188955; organism=Citrus sinensis; type=EST; length=765bp
TTTTTTTTTTTAGATGAATAAGTAATTCTTAATTAATTTTGAGAAATTTA
AAGACGATTAAGAAGTCGGATGTCACATTGTCACTACACATTGCCACGAA
CTATGTACATACATCACATATATTATACACAGGCAGGCACAAATATCTTA
GCATTAAATGATGAACAATGTTGCATCTTCTTTCCCATGACATCTTAGTT
AAGCTATTTATAAACTGCCTCTAGATTCTGTGTCTGGTGCGGTGCAAGTG
CGTATCAAAGTCATGGTGGGGCAAATTCCGCTAGAGGTTCGGATAATGCA
AGCTCAAATTTTATTCAACTTTGATATCAATTGGACAGAGACTAAAACTT
GAATTTAGCGGCACCACTTGATGGCTTAGAGGCAAAAACATAAAGGCCAA
GATCGTTATTGTTGATTACGCCTCGGTCAATTCTCGACTGGTAGAATTGT
TCCTTCACGTTGAGGATGAACTGTGAATCAATGCTCTCTTTTACCAAAGC
AACAACACAACCACCCCAACCAGCCCCTGTAAGCCTTGCCCCAAGAGCAC
CATTATTCCGACAAACATTCACCAGTTCTTCCAACTCTGGGCAACTGCAC
TCATATAAAACACTACAGCTGTGGTGGCTGTCATTCATAAGGTCACCAAG
CTTCTTCAGTTTGTCTTCCTCACTTAAATTTGAGGATACAGTGTCCTTGA
AAGCATGTACCCTCTTGGCTTCAGAGTACACGTGGGCAGCTCTCTGATGT
AACTTGTATTGCTTG
back to top