CN188952
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CN188952 vs. ExPASy Swiss-Prot
Match: SF3BB_ARATH (Uncharacterized protein At4g14342 OS=Arabidopsis thaliana GN=At4g14342 PE=3 SV=1) HSP 1 Score: 173.326 bits (438), Expect = 1.319e-42 Identity = 79/87 (90.80%), Postives = 86/87 (98.85%), Query Frame = 2 Query: 323 MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFSIAENESIGREHYNFMQKMLLPCGLPPEREDD 583 MQASDRFNINSQLEHLQAKYVGTGHADL+RFEWAVNIQRDSYASY+GHYP+L+YF+IAENESIGRE YNFMQKMLLPCGLPPERE++ Sbjct: 1 MQASDRFNINSQLEHLQAKYVGTGHADLSRFEWAVNIQRDSYASYIGHYPMLSYFAIAENESIGRERYNFMQKMLLPCGLPPEREEE 87
BLAST of CN188952 vs. ExPASy Swiss-Prot
Match: SF3BA_ARATH (Uncharacterized protein At3g23325 OS=Arabidopsis thaliana GN=At3g23325 PE=2 SV=1) HSP 1 Score: 173.326 bits (438), Expect = 1.319e-42 Identity = 79/87 (90.80%), Postives = 85/87 (97.70%), Query Frame = 2 Query: 323 MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFSIAENESIGREHYNFMQKMLLPCGLPPEREDD 583 MQASDRFNINSQLEHLQAKYVGTGHADL+RFEW VNIQRDSYASY+GHYP+L+YF+IAENESIGRE YNFMQKMLLPCGLPPERED+ Sbjct: 1 MQASDRFNINSQLEHLQAKYVGTGHADLSRFEWTVNIQRDSYASYIGHYPMLSYFAIAENESIGRERYNFMQKMLLPCGLPPEREDE 87
BLAST of CN188952 vs. ExPASy Swiss-Prot
Match: SF3B5_DROME (Probable splicing factor 3B subunit 5 OS=Drosophila melanogaster GN=CG11985 PE=1 SV=1) HSP 1 Score: 120.168 bits (300), Expect = 1.325e-26 Identity = 53/83 (63.86%), Postives = 66/83 (79.52%), Query Frame = 2 Query: 335 DRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFSIAENESIGREHYNFMQKMLLPCGLPPEREDD 583 +R+NI+SQLEHLQ+KY+GTGHAD +FEW N RDS ASY+GHY IL YF+IAENES R +N M++ML PCG PPE+ +D Sbjct: 3 ERYNIHSQLEHLQSKYIGTGHADTTKFEWLTNQHRDSLASYMGHYDILNYFAIAENESKARVRFNLMERMLQPCGPPPEKLED 85
BLAST of CN188952 vs. ExPASy Swiss-Prot
Match: SF3B5_HUMAN (Splicing factor 3B subunit 5 OS=Homo sapiens GN=SF3B5 PE=1 SV=1) HSP 1 Score: 114.775 bits (286), Expect = 5.566e-25 Identity = 49/84 (58.33%), Postives = 66/84 (78.57%), Query Frame = 2 Query: 332 SDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFSIAENESIGREHYNFMQKMLLPCGLPPEREDD 583 +DR+ I+SQLEHLQ+KY+GTGHAD ++EW VN RDSY SY+GH+ +L YF+IAENES R +N M+KML PCG P ++ ++ Sbjct: 2 TDRYTIHSQLEHLQSKYIGTGHADTTKWEWLVNQHRDSYCSYMGHFDLLNYFAIAENESKARVRFNLMEKMLQPCGPPADKPEE 85
BLAST of CN188952 vs. ExPASy Swiss-Prot
Match: SF3B5_BOVIN (Splicing factor 3B subunit 5 OS=Bos taurus GN=SF3B5 PE=3 SV=1) HSP 1 Score: 114.775 bits (286), Expect = 5.566e-25 Identity = 49/84 (58.33%), Postives = 66/84 (78.57%), Query Frame = 2 Query: 332 SDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFSIAENESIGREHYNFMQKMLLPCGLPPEREDD 583 +DR+ I+SQLEHLQ+KY+GTGHAD ++EW VN RDSY SY+GH+ +L YF+IAENES R +N M+KML PCG P ++ ++ Sbjct: 2 TDRYTIHSQLEHLQSKYIGTGHADTTKWEWLVNQHRDSYCSYMGHFDLLNYFAIAENESKARVRFNLMEKMLQPCGPPADKPEE 85
BLAST of CN188952 vs. ExPASy Swiss-Prot
Match: SF3B5_MOUSE (Splicing factor 3B subunit 5 OS=Mus musculus GN=Sf3b5 PE=2 SV=1) HSP 1 Score: 110.923 bits (276), Expect = 8.037e-24 Identity = 48/84 (57.14%), Postives = 65/84 (77.38%), Query Frame = 2 Query: 332 SDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFSIAENESIGREHYNFMQKMLLPCGLPPEREDD 583 +DR+ I+SQLEHLQ+KY+GTGHAD ++EW VN RDSY SY+GH+ +L YF+IAENES R +N M+KML P G P ++ ++ Sbjct: 2 TDRYTIHSQLEHLQSKYIGTGHADTTKWEWLVNQHRDSYCSYMGHFDLLNYFAIAENESKARVRFNLMEKMLQPSGPPADKPEE 85
BLAST of CN188952 vs. ExPASy Swiss-Prot
Match: SF3B5_DICDI (Splicing factor 3B subunit 5 OS=Dictyostelium discoideum GN=sf3b5 PE=3 SV=1) HSP 1 Score: 106.301 bits (264), Expect = 1.980e-22 Identity = 47/84 (55.95%), Postives = 64/84 (76.19%), Query Frame = 2 Query: 332 SDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFSIAENESIGREHYNFMQKMLLPCGLPPEREDD 583 S+R ++NSQLEHLQ +YVGTGHAD+++ EW N RDS +S++GH L+ FSIAENES+GR YN + KM+ PCG P+ +D+ Sbjct: 2 SERESLNSQLEHLQMRYVGTGHADISKHEWLTNQHRDSLSSFIGHSSFLSLFSIAENESVGRVRYNTLTKMISPCGPAPKIKDN 85
BLAST of CN188952 vs. ExPASy Swiss-Prot
Match: YHV5_SCHPO (Uncharacterized protein C211.05 OS=Schizosaccharomyces pombe GN=SPBC211.05 PE=2 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 2.591e-14 Identity = 36/79 (45.57%), Postives = 52/79 (65.82%), Query Frame = 2 Query: 332 SDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFSIAENESIGREHYNFMQKMLLPCGLPP 568 +DR ++LE LQA+YVG G+A ++EW VN RD+ +S VGH P+LAY + A E + N ++KM++PCG PP Sbjct: 2 ADRLRSQAKLEQLQARYVGVGNAFTTKYEWMVNQHRDTLSSVVGHPPLLAYMATALGEPRVQVRKNLLEKMIMPCGPPP 80 The following BLAST results are available for this feature:
BLAST of CN188952 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 8
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CN188952 ID=CN188952; Name=CN188952; organism=Citrus sinensis; type=EST; length=784bpback to top |