CN188948

Overview
NameCN188948
Unique NameCN188948
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length543
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188948 vs. ExPASy Swiss-Prot
Match: HGD_ARATH (Homogentisate 1,2-dioxygenase OS=Arabidopsis thaliana GN=HGO PE=2 SV=2)

HSP 1 Score: 131.339 bits (329), Expect = 2.853e-30
Identity = 58/73 (79.45%), Postives = 63/73 (86.30%), Query Frame = -1
Query:  325 SLHSCMTPHGPVTKTYEATIARGSKAGPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYQCWIGLRSHFS 543
            SLHSCMTPHGP T TYEATIAR +   P K+T TMAFMFES LIPR+C WALESPF+DHDYYQCWIGL+SHFS
Sbjct:  369 SLHSCMTPHGPDTTTYEATIARVNAMAPSKLTGTMAFMFESALIPRVCHWALESPFLDHDYYQCWIGLKSHFS 441          
BLAST of CN188948 vs. ExPASy Swiss-Prot
Match: HGD_ORYSJ (Homogentisate 1,2-dioxygenase OS=Oryza sativa subsp. japonica GN=HGO PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 5.037e-27
Identity = 53/82 (64.63%), Postives = 64/82 (78.05%), Query Frame = -1
Query:  298 SLHSCMTPHGPVTKTYEATIARGSKAGPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYQCWIGLRSHFSYEEADNESD 543
            SLHSCMTPHGP TKTYEATI+R     P +++ T+AFMFES LIPR+C WAL+SP  D DYYQCWIGL+SHFS++     S+
Sbjct:  384 SLHSCMTPHGPDTKTYEATISRPDANEPSRLSGTLAFMFESALIPRVCQWALDSPSRDLDYYQCWIGLKSHFSHDNGGATSE 465          
BLAST of CN188948 vs. ExPASy Swiss-Prot
Match: HGD_RALEH (Homogentisate 1,2-dioxygenase OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=hmgA PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.140e-13
Identity = 37/74 (50.00%), Postives = 51/74 (68.92%), Query Frame = -1
Query:  325 SLHSCMTPHGPVTKTYE-ATIARGSKAGPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYQCWIGLRSHFS 543
            SLH+CM+ HGP  +T+E A+ A  SK  P++I DTMAFMFE+  + R  P+A +S  +  DYY CW GL+ HF+
Sbjct:  364 SLHNCMSGHGPDAETFEKASAADTSK--PHRIEDTMAFMFETPGVIRPTPYAAQSASLQQDYYTCWQGLKKHFN 435          
BLAST of CN188948 vs. ExPASy Swiss-Prot
Match: HGD_RALEJ (Homogentisate 1,2-dioxygenase OS=Ralstonia eutropha (strain JMP134) GN=hmgA PE=3 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 2.683e-12
Identity = 34/73 (46.58%), Postives = 45/73 (61.64%), Query Frame = -1
Query:  325 SLHSCMTPHGPVTKTYEATIARGSKAGPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYQCWIGLRSHFS 543
            SLH+CM+ HGP   T+ A       + P+ ITDTMAFMFE+  + R  P+A  S  +  DYY CW GL+ HF+
Sbjct:  364 SLHNCMSGHGPDADTF-AKATSADTSTPHHITDTMAFMFETPGVIRPTPYAARSASLQQDYYTCWQGLKKHFN 435          
BLAST of CN188948 vs. ExPASy Swiss-Prot
Match: HGD_BORPE (Homogentisate 1,2-dioxygenase OS=Bordetella pertussis GN=hmgA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.504e-12
Identity = 37/77 (48.05%), Postives = 45/77 (58.44%), Query Frame = -1
Query:  313 SLHSCMTPHGPVTKTYEATIARGSKAGPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYQCWIGLRSHFSYEEA 543
            SLH+CM+ HGP   T+E      +    Y I DTMAFMFE+  + R    AL SP    DYYQCW GL+ HF  E+A
Sbjct:  357 SLHNCMSGHGPDADTFEKASHADTSQAHY-IRDTMAFMFETRRVIRPTAQALASPQRQDDYYQCWQGLQKHFDPEQA 432          
BLAST of CN188948 vs. ExPASy Swiss-Prot
Match: HGD_BORPA (Homogentisate 1,2-dioxygenase OS=Bordetella parapertussis GN=hmgA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.504e-12
Identity = 37/77 (48.05%), Postives = 45/77 (58.44%), Query Frame = -1
Query:  313 SLHSCMTPHGPVTKTYEATIARGSKAGPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYQCWIGLRSHFSYEEA 543
            SLH+CM+ HGP   T+E      +    Y I DTMAFMFE+  + R    AL SP    DYYQCW GL+ HF  E+A
Sbjct:  357 SLHNCMSGHGPDADTFEKASHADTSQAHY-IRDTMAFMFETRRVIRPTAQALASPQRQDDYYQCWQGLQKHFDPEQA 432          
BLAST of CN188948 vs. ExPASy Swiss-Prot
Match: HGD_BORBR (Homogentisate 1,2-dioxygenase OS=Bordetella bronchiseptica GN=hmgA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.504e-12
Identity = 37/77 (48.05%), Postives = 45/77 (58.44%), Query Frame = -1
Query:  313 SLHSCMTPHGPVTKTYEATIARGSKAGPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYQCWIGLRSHFSYEEA 543
            SLH+CM+ HGP   T+E      +    Y I DTMAFMFE+  + R    AL SP    DYYQCW GL+ HF  E+A
Sbjct:  357 SLHNCMSGHGPDADTFEKASHADTSQAHY-IRDTMAFMFETRRVIRPTAQALASPQRQDDYYQCWQGLQKHFDPEQA 432          
BLAST of CN188948 vs. ExPASy Swiss-Prot
Match: HGD_BORA1 (Homogentisate 1,2-dioxygenase OS=Bordetella avium (strain 197N) GN=hmgA PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 7.807e-12
Identity = 39/78 (50.00%), Postives = 51/78 (65.38%), Query Frame = -1
Query:  313 SLHSCMTPHGPVTKTYE-ATIARGSKAGPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYQCWIGLRSHFSYEEA 543
            SLH+CM+ HGP   T+E A++A  SKA  + I DTMAFMFE+  + R    AL S  +  DYYQCW  L+ HF+ E+A
Sbjct:  357 SLHNCMSGHGPDADTFEKASVADTSKA--HYIRDTMAFMFETRRVIRPTRQALASAQLQGDYYQCWQDLKKHFNPEKA 432          
BLAST of CN188948 vs. ExPASy Swiss-Prot
Match: HGD_BURCM (Homogentisate 1,2-dioxygenase OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=hmgA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.739e-11
Identity = 32/76 (42.11%), Postives = 49/76 (64.47%), Query Frame = -1
Query:  316 SLHSCMTPHGPVTKTYEATIARGSKAGPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYQCWIGLRSHFSYEE 543
            SLH+CM+ HGP   T+E   A  +   P+K+  TMAFMFE+  + R   +AL++  +  DY++CW G+R HF+ E+
Sbjct:  369 SLHNCMSGHGPDADTFEKASASDTTK-PHKVDATMAFMFETRTLIRPTRYALDTAQLQPDYFECWQGIRKHFNPEQ 443          
BLAST of CN188948 vs. ExPASy Swiss-Prot
Match: HGD_BURA4 (Homogentisate 1,2-dioxygenase OS=Burkholderia ambifaria (strain MC40-6) GN=hmgA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.739e-11
Identity = 32/76 (42.11%), Postives = 49/76 (64.47%), Query Frame = -1
Query:  316 SLHSCMTPHGPVTKTYEATIARGSKAGPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYQCWIGLRSHFSYEE 543
            SLH+CM+ HGP   T+E   A  +   P+K+  TMAFMFE+  + R   +AL++  +  DY++CW G+R HF+ E+
Sbjct:  369 SLHNCMSGHGPDADTFEKASASDTTK-PHKVDATMAFMFETRTLIRPTRYALDTAQLQADYFECWQGIRKHFNPEQ 443          
The following BLAST results are available for this feature:
BLAST of CN188948 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
HGD_ARATH2.853e-3079.45Homogentisate 1,2-dioxygenase OS=Arabidopsis thali... [more]
HGD_ORYSJ5.037e-2764.63Homogentisate 1,2-dioxygenase OS=Oryza sativa subs... [more]
HGD_RALEH4.140e-1350.00Homogentisate 1,2-dioxygenase OS=Ralstonia eutroph... [more]
HGD_RALEJ2.683e-1246.58Homogentisate 1,2-dioxygenase OS=Ralstonia eutroph... [more]
HGD_BORPE3.504e-1248.05Homogentisate 1,2-dioxygenase OS=Bordetella pertus... [more]
HGD_BORPA3.504e-1248.05Homogentisate 1,2-dioxygenase OS=Bordetella parape... [more]
HGD_BORBR3.504e-1248.05Homogentisate 1,2-dioxygenase OS=Bordetella bronch... [more]
HGD_BORA17.807e-1250.00Homogentisate 1,2-dioxygenase OS=Bordetella avium ... [more]
HGD_BURCM1.739e-1142.11Homogentisate 1,2-dioxygenase OS=Burkholderia ambi... [more]
HGD_BURA41.739e-1142.11Homogentisate 1,2-dioxygenase OS=Burkholderia ambi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001B09_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188948 ID=CN188948; Name=CN188948; organism=Citrus sinensis; type=EST; length=543bp
TTTTTTTTTTTTTTTTTAGCATAAAGGACACACACCACTACATATACACA
CTTTTTTAAAATTTTTTTACATCAATTATATATGTACATCCAAGGTTTTT
ATCAGTACTTAGTACATTCACAAACACACAAACAAAAGCTATATATAACC
CAATCATACATGTGTGATTAATCGCAAATTTTTTACCTTGGGGGTTTATA
AATACTCGCCCATCAATTACCGGAGAAGCTCTCGTGCCTGGGGACCAAAT
CAGGCGCACAATATCCTCTGTTCCATGTCCCACATTGTCAACTCCCCATC
GCTTTCATTATCTGCTTCTTCATACGAAAAATGAGATCTTAATCCAATCC
AGCACTGATAATAATCATGATCCATAAAGGGAGACTCGAGAGCCCAAGGG
CAGATTCTAGGAATTAAACATGATTCAAACATAAAAGCCATAGTATCAGT
GATCTTGTATGGCCCAGCCTTGCTTCCACGTGCAATGGTGGCCTCATATG
TCTTCGTAACAGGACCATGGGGAGTCATACAACTATGAAGGCT
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