CN188948
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN188948 vs. ExPASy Swiss-Prot
Match: HGD_ARATH (Homogentisate 1,2-dioxygenase OS=Arabidopsis thaliana GN=HGO PE=2 SV=2) HSP 1 Score: 131.339 bits (329), Expect = 2.853e-30 Identity = 58/73 (79.45%), Postives = 63/73 (86.30%), Query Frame = -1 Query: 325 SLHSCMTPHGPVTKTYEATIARGSKAGPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYQCWIGLRSHFS 543 SLHSCMTPHGP T TYEATIAR + P K+T TMAFMFES LIPR+C WALESPF+DHDYYQCWIGL+SHFS Sbjct: 369 SLHSCMTPHGPDTTTYEATIARVNAMAPSKLTGTMAFMFESALIPRVCHWALESPFLDHDYYQCWIGLKSHFS 441
BLAST of CN188948 vs. ExPASy Swiss-Prot
Match: HGD_ORYSJ (Homogentisate 1,2-dioxygenase OS=Oryza sativa subsp. japonica GN=HGO PE=2 SV=1) HSP 1 Score: 120.553 bits (301), Expect = 5.037e-27 Identity = 53/82 (64.63%), Postives = 64/82 (78.05%), Query Frame = -1 Query: 298 SLHSCMTPHGPVTKTYEATIARGSKAGPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYQCWIGLRSHFSYEEADNESD 543 SLHSCMTPHGP TKTYEATI+R P +++ T+AFMFES LIPR+C WAL+SP D DYYQCWIGL+SHFS++ S+ Sbjct: 384 SLHSCMTPHGPDTKTYEATISRPDANEPSRLSGTLAFMFESALIPRVCQWALDSPSRDLDYYQCWIGLKSHFSHDNGGATSE 465
BLAST of CN188948 vs. ExPASy Swiss-Prot
Match: HGD_RALEH (Homogentisate 1,2-dioxygenase OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=hmgA PE=3 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 4.140e-13 Identity = 37/74 (50.00%), Postives = 51/74 (68.92%), Query Frame = -1 Query: 325 SLHSCMTPHGPVTKTYE-ATIARGSKAGPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYQCWIGLRSHFS 543 SLH+CM+ HGP +T+E A+ A SK P++I DTMAFMFE+ + R P+A +S + DYY CW GL+ HF+ Sbjct: 364 SLHNCMSGHGPDAETFEKASAADTSK--PHRIEDTMAFMFETPGVIRPTPYAAQSASLQQDYYTCWQGLKKHFN 435
BLAST of CN188948 vs. ExPASy Swiss-Prot
Match: HGD_RALEJ (Homogentisate 1,2-dioxygenase OS=Ralstonia eutropha (strain JMP134) GN=hmgA PE=3 SV=2) HSP 1 Score: 71.633 bits (174), Expect = 2.683e-12 Identity = 34/73 (46.58%), Postives = 45/73 (61.64%), Query Frame = -1 Query: 325 SLHSCMTPHGPVTKTYEATIARGSKAGPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYQCWIGLRSHFS 543 SLH+CM+ HGP T+ A + P+ ITDTMAFMFE+ + R P+A S + DYY CW GL+ HF+ Sbjct: 364 SLHNCMSGHGPDADTF-AKATSADTSTPHHITDTMAFMFETPGVIRPTPYAARSASLQQDYYTCWQGLKKHFN 435
BLAST of CN188948 vs. ExPASy Swiss-Prot
Match: HGD_BORPE (Homogentisate 1,2-dioxygenase OS=Bordetella pertussis GN=hmgA PE=3 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 3.504e-12 Identity = 37/77 (48.05%), Postives = 45/77 (58.44%), Query Frame = -1 Query: 313 SLHSCMTPHGPVTKTYEATIARGSKAGPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYQCWIGLRSHFSYEEA 543 SLH+CM+ HGP T+E + Y I DTMAFMFE+ + R AL SP DYYQCW GL+ HF E+A Sbjct: 357 SLHNCMSGHGPDADTFEKASHADTSQAHY-IRDTMAFMFETRRVIRPTAQALASPQRQDDYYQCWQGLQKHFDPEQA 432
BLAST of CN188948 vs. ExPASy Swiss-Prot
Match: HGD_BORPA (Homogentisate 1,2-dioxygenase OS=Bordetella parapertussis GN=hmgA PE=3 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 3.504e-12 Identity = 37/77 (48.05%), Postives = 45/77 (58.44%), Query Frame = -1 Query: 313 SLHSCMTPHGPVTKTYEATIARGSKAGPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYQCWIGLRSHFSYEEA 543 SLH+CM+ HGP T+E + Y I DTMAFMFE+ + R AL SP DYYQCW GL+ HF E+A Sbjct: 357 SLHNCMSGHGPDADTFEKASHADTSQAHY-IRDTMAFMFETRRVIRPTAQALASPQRQDDYYQCWQGLQKHFDPEQA 432
BLAST of CN188948 vs. ExPASy Swiss-Prot
Match: HGD_BORBR (Homogentisate 1,2-dioxygenase OS=Bordetella bronchiseptica GN=hmgA PE=3 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 3.504e-12 Identity = 37/77 (48.05%), Postives = 45/77 (58.44%), Query Frame = -1 Query: 313 SLHSCMTPHGPVTKTYEATIARGSKAGPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYQCWIGLRSHFSYEEA 543 SLH+CM+ HGP T+E + Y I DTMAFMFE+ + R AL SP DYYQCW GL+ HF E+A Sbjct: 357 SLHNCMSGHGPDADTFEKASHADTSQAHY-IRDTMAFMFETRRVIRPTAQALASPQRQDDYYQCWQGLQKHFDPEQA 432
BLAST of CN188948 vs. ExPASy Swiss-Prot
Match: HGD_BORA1 (Homogentisate 1,2-dioxygenase OS=Bordetella avium (strain 197N) GN=hmgA PE=3 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 7.807e-12 Identity = 39/78 (50.00%), Postives = 51/78 (65.38%), Query Frame = -1 Query: 313 SLHSCMTPHGPVTKTYE-ATIARGSKAGPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYQCWIGLRSHFSYEEA 543 SLH+CM+ HGP T+E A++A SKA + I DTMAFMFE+ + R AL S + DYYQCW L+ HF+ E+A Sbjct: 357 SLHNCMSGHGPDADTFEKASVADTSKA--HYIRDTMAFMFETRRVIRPTRQALASAQLQGDYYQCWQDLKKHFNPEKA 432
BLAST of CN188948 vs. ExPASy Swiss-Prot
Match: HGD_BURCM (Homogentisate 1,2-dioxygenase OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=hmgA PE=3 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 1.739e-11 Identity = 32/76 (42.11%), Postives = 49/76 (64.47%), Query Frame = -1 Query: 316 SLHSCMTPHGPVTKTYEATIARGSKAGPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYQCWIGLRSHFSYEE 543 SLH+CM+ HGP T+E A + P+K+ TMAFMFE+ + R +AL++ + DY++CW G+R HF+ E+ Sbjct: 369 SLHNCMSGHGPDADTFEKASASDTTK-PHKVDATMAFMFETRTLIRPTRYALDTAQLQPDYFECWQGIRKHFNPEQ 443
BLAST of CN188948 vs. ExPASy Swiss-Prot
Match: HGD_BURA4 (Homogentisate 1,2-dioxygenase OS=Burkholderia ambifaria (strain MC40-6) GN=hmgA PE=3 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 1.739e-11 Identity = 32/76 (42.11%), Postives = 49/76 (64.47%), Query Frame = -1 Query: 316 SLHSCMTPHGPVTKTYEATIARGSKAGPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYQCWIGLRSHFSYEE 543 SLH+CM+ HGP T+E A + P+K+ TMAFMFE+ + R +AL++ + DY++CW G+R HF+ E+ Sbjct: 369 SLHNCMSGHGPDADTFEKASASDTTK-PHKVDATMAFMFETRTLIRPTRYALDTAQLQADYFECWQGIRKHFNPEQ 443 The following BLAST results are available for this feature:
BLAST of CN188948 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 18
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Sequences
The
following sequences are available for this feature:
EST sequence >CN188948 ID=CN188948; Name=CN188948; organism=Citrus sinensis; type=EST; length=543bpback to top |