CN188947

Overview
NameCN188947
Unique NameCN188947
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length737
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2694 contig Csv1_Contig2694:1..737. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188947 vs. ExPASy Swiss-Prot
Match: IMA1B_ORYSJ (Importin subunit alpha-1b OS=Oryza sativa subsp. japonica GN=Os05g0155500 PE=1 SV=2)

HSP 1 Score: 372.859 bits (956), Expect = 1.022e-102
Identity = 180/214 (84.11%), Postives = 199/214 (92.99%), Query Frame = 3
Query:    6 YPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYWLDDEDETMPPGDASQ 647
            +PS SVLIPALRTVGNIVTGDDMQTQCVI++QALPCLLNLL+ N+KKSIKKEACWT+SNITAGNREQIQAVI ANII PLV LL+ AEFDIKKEAAWAISNATSGGTH+QIK+LV QGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLG  DVN + QMIDDAEGLEKIE+LQ+HDN EIYEK+VK+LE+YWL++ED+ MP GD +Q
Sbjct:  301 HPSASVLIPALRTVGNIVTGDDMQTQCVIDHQALPCLLNLLTNNHKKSIKKEACWTISNITAGNREQIQAVINANIIAPLVHLLQTAEFDIKKEAAWAISNATSGGTHDQIKYLVAQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGAGDVNSYAQMIDDAEGLEKIENLQSHDNTEIYEKAVKMLESYWLEEEDDAMPSGDNAQ 514          
BLAST of CN188947 vs. ExPASy Swiss-Prot
Match: IMA1_ARATH (Importin subunit alpha-1 OS=Arabidopsis thaliana GN=KAP1 PE=2 SV=2)

HSP 1 Score: 352.058 bits (902), Expect = 1.866e-96
Identity = 173/216 (80.09%), Postives = 198/216 (91.67%), Query Frame = 3
Query:   12 SPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNT-DVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYWLDDEDE--TMPPG-DASQ 647
            SPSVLIPALRTVGNIVTGDD+QTQCVI   ALPCL NLL+ N+KKSIKKEACWT+SNITAGN++QIQ V+EAN+I PLV+LL+NAEFDIKKEAAWAISNATSGG+H+QIK+LV QGCIKPLCDLLVCPDPRI+TVCLEGLENILKVGEAEKNLG+T D+N + Q+IDDAEGLEKIE+LQ+HDN EIYEK+VK+LETYWL++ED+    PPG D SQ
Sbjct:  297 SPSVLIPALRTVGNIVTGDDIQTQCVINSGALPCLANLLTQNHKKSIKKEACWTISNITAGNKDQIQTVVEANLISPLVSLLQNAEFDIKKEAAWAISNATSGGSHDQIKYLVEQGCIKPLCDLLVCPDPRIITVCLEGLENILKVGEAEKNLGHTGDMNYYAQLIDDAEGLEKIENLQSHDNNEIYEKAVKILETYWLEEEDDETQQPPGVDGSQ 512          
BLAST of CN188947 vs. ExPASy Swiss-Prot
Match: IMA1A_ORYSJ (Importin subunit alpha-1a OS=Oryza sativa subsp. japonica GN=Os01g0253300 PE=1 SV=2)

HSP 1 Score: 347.821 bits (891), Expect = 3.520e-95
Identity = 166/207 (80.19%), Postives = 191/207 (92.27%), Query Frame = 3
Query:    6 YPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYWLDDEDETM 626
            +PSPSVLIPALRTVGNIVTGDD QTQC+I++QALPCLL+LL+ N KKSIKKEACWT+SNITAGN++QIQAVI A IIGPLV LL+ AEFDIKKEAAWAISNATSGG+H+QIK+LV +GCIKPLCDLL+CPD RIVTVCLEGLENILKVGE +K L   DVNVF+QMID+AEGLEKIE+LQ+HDN EIYEK+VK+LE YW+D+ED+TM
Sbjct:  295 HPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEAYWMDEEDDTM 501          
BLAST of CN188947 vs. ExPASy Swiss-Prot
Match: IMA_SOLLC (Importin subunit alpha OS=Solanum lycopersicum PE=2 SV=2)

HSP 1 Score: 345.895 bits (886), Expect = 1.338e-94
Identity = 167/205 (81.46%), Postives = 191/205 (93.17%), Query Frame = 3
Query:    6 YPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTD-VNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYWLDDED 617
            + SPSVLIPALRTVGNIVTGDD+QTQ +I++ ALPCL+NLL+ NYKKSIKKEACWT+SNITAGNR QIQ VIEA II PLV LL+NAEF+IKKEAAWAISNATSGG H+QIKFLV QGCIKPLCDLLVCPDPRIVTVCLEGLENILK+GEA+K+LGNT+ VNV+ Q+ID+AEGLEKIE+LQ+HDN EIYEK+VK+LETYWL++ED
Sbjct:  296 HSSPSVLIPALRTVGNIVTGDDIQTQVMIDHHALPCLVNLLTQNYKKSIKKEACWTISNITAGNRNQIQIVIEAGIIAPLVYLLQNAEFEIKKEAAWAISNATSGGNHDQIKFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKIGEADKDLGNTEGVNVYAQLIDEAEGLEKIENLQSHDNTEIYEKAVKILETYWLEEED 500          
BLAST of CN188947 vs. ExPASy Swiss-Prot
Match: IMA2_ARATH (Importin subunit alpha-2 OS=Arabidopsis thaliana GN=KAP2 PE=1 SV=2)

HSP 1 Score: 322.398 bits (825), Expect = 1.584e-87
Identity = 154/207 (74.40%), Postives = 185/207 (89.37%), Query Frame = 3
Query:    3 GYPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNT-DVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYWLDDEDE 620
            G+ SPSVLIPALRT+GNIVTGDD+QTQ V++ QALPCLLNLL  NYKKSIKKEACWT+SNITAGN +QIQAVI+A II  LV +L++AEF++KKEAAW ISNATSGGTH+QIKF+V QGCIKPLCDLL CPD ++VTVCLE LENIL VGEAEKNLG+T + N++ QMID+AEGLEKIE+LQ+HDN +IY+K+VK+LET+W +D +E
Sbjct:  297 GHSSPSVLIPALRTIGNIVTGDDLQTQMVLDQQALPCLLNLLKNNYKKSIKKEACWTISNITAGNADQIQAVIDAGIIQSLVWVLQSAEFEVKKEAAWGISNATSGGTHDQIKFMVSQGCIKPLCDLLTCPDLKVVTVCLEALENILVVGEAEKNLGHTGEDNLYAQMIDEAEGLEKIENLQSHDNNDIYDKAVKILETFWTEDNEE 503          
BLAST of CN188947 vs. ExPASy Swiss-Prot
Match: IMA7_MOUSE (Importin subunit alpha-7 OS=Mus musculus GN=Kpna6 PE=1 SV=2)

HSP 1 Score: 244.202 bits (622), Expect = 5.481e-64
Identity = 123/205 (60.00%), Postives = 159/205 (77.56%), Query Frame = 3
Query:   21 VLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYW-LDDEDETMPP 632
            V  PALR VGNIVTGDD+QTQ ++   ALPCLL+LLS + K+SI+KEACWT+SNITAGNR QIQAVI+ANI   L+ +L+ AEF  +KEAAWAI+NATSGGT EQI++LV  GCIKPLCDLL   D +IV V L GLENIL++GE E     + VN +  +I++A GL+KIE LQ+H+N EIY+K+  L+E Y+ ++D+D ++ P
Sbjct:  310 VASPALRAVGNIVTGDDIQTQVILNCSALPCLLHLLSSS-KESIRKEACWTISNITAGNRAQIQAVIDANIFPVLIEILQKAEFRTRKEAAWAITNATSGGTPEQIRYLVSLGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQESKRSGSGVNPYCGLIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYFGVEDDDSSLAP 513          
BLAST of CN188947 vs. ExPASy Swiss-Prot
Match: IMA7_BOVIN (Importin subunit alpha-7 OS=Bos taurus GN=KPNA6 PE=2 SV=1)

HSP 1 Score: 243.432 bits (620), Expect = 9.349e-64
Identity = 123/205 (60.00%), Postives = 159/205 (77.56%), Query Frame = 3
Query:   21 VLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYW-LDDEDETMPP 632
            V  PALR VGNIVTGDD+QTQ ++   ALPCLL+LLS + K+SI+KEACWT+SNITAGNR QIQAVI+ANI   L+ +L+ AEF  +KEAAWAI+NATSGGT EQI++LV  GCIKPLCDLL   D +IV V L GLENIL++GE E     + VN +  +I++A GL+KIE LQ+H+N EIY+K+  L+E Y+ ++D+D ++ P
Sbjct:  310 VASPALRAVGNIVTGDDIQTQVILNCSALPCLLHLLSSS-KESIRKEACWTISNITAGNRAQIQAVIDANIFPVLIEILQKAEFRTRKEAAWAITNATSGGTPEQIRYLVSLGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEGKRSGSGVNPYCGLIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYFGVEDDDSSLAP 513          
BLAST of CN188947 vs. ExPASy Swiss-Prot
Match: IMA7_PONAB (Importin subunit alpha-7 OS=Pongo abelii GN=KPNA6 PE=2 SV=1)

HSP 1 Score: 242.276 bits (617), Expect = 2.083e-63
Identity = 123/205 (60.00%), Postives = 158/205 (77.07%), Query Frame = 3
Query:   21 VLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYW-LDDEDETMPP 632
            V  PALR VGNIVTGDD+QTQ ++   ALPCLL+LLS   K+SI+KEACWT+SNITAGNR QIQAVI+ANI   L+ +L+ AEF  +KEAAWAI+NATSGGT EQI++LV  GCIKPLCDLL   D +IV V L GLENIL++GE E     + VN +  +I++A GL+KIE LQ+H+N EIY+K+  L+E Y+ ++D+D ++ P
Sbjct:  310 VASPALRAVGNIVTGDDIQTQVILNCSALPCLLHLLSSP-KESIRKEACWTISNITAGNRAQIQAVIDANIFPVLIEILQKAEFRTRKEAAWAITNATSGGTPEQIRYLVSLGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEGKRSGSGVNPYCGLIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYFGVEDDDSSLAP 513          
BLAST of CN188947 vs. ExPASy Swiss-Prot
Match: IMA7_HUMAN (Importin subunit alpha-7 OS=Homo sapiens GN=KPNA6 PE=1 SV=1)

HSP 1 Score: 242.276 bits (617), Expect = 2.083e-63
Identity = 123/205 (60.00%), Postives = 158/205 (77.07%), Query Frame = 3
Query:   21 VLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYW-LDDEDETMPP 632
            V  PALR VGNIVTGDD+QTQ ++   ALPCLL+LLS   K+SI+KEACWT+SNITAGNR QIQAVI+ANI   L+ +L+ AEF  +KEAAWAI+NATSGGT EQI++LV  GCIKPLCDLL   D +IV V L GLENIL++GE E     + VN +  +I++A GL+KIE LQ+H+N EIY+K+  L+E Y+ ++D+D ++ P
Sbjct:  310 VASPALRAVGNIVTGDDIQTQVILNCSALPCLLHLLSSP-KESIRKEACWTISNITAGNRAQIQAVIDANIFPVLIEILQKAEFRTRKEAAWAITNATSGGTPEQIRYLVSLGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEGKRSGSGVNPYCGLIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYFGVEDDDSSLAP 513          
BLAST of CN188947 vs. ExPASy Swiss-Prot
Match: IMA5_HUMAN (Importin subunit alpha-6 OS=Homo sapiens GN=KPNA5 PE=1 SV=2)

HSP 1 Score: 241.891 bits (616), Expect = 2.720e-63
Identity = 125/211 (59.24%), Postives = 159/211 (75.36%), Query Frame = 3
Query:   21 VLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYWLDDEDE--TMPPGDASQ 647
            V+ PALR VGNIVTGDD+QTQ ++   ALPCLL+LLS   K+SI+KEACWTVSNITAGNR QIQAVI+ANI   L+ +L+ AEF  +KEAAWAI+NATSGGT EQI++LV  GCIKPLCDLL   D +IV V L GLENIL++GE E       +N +  +I++A GL+KIE LQ+H+N EIY+K+  L+E Y+  +ED+   +P  D +Q
Sbjct:  310 VVSPALRAVGNIVTGDDIQTQVILNCSALPCLLHLLSSP-KESIRKEACWTVSNITAGNRAQIQAVIDANIFPVLIEILQKAEFRTRKEAAWAITNATSGGTPEQIRYLVALGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQESKQNGIGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYFGVEEDDPSIVPQVDENQ 519          
The following BLAST results are available for this feature:
BLAST of CN188947 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
IMA1B_ORYSJ1.022e-10284.11Importin subunit alpha-1b OS=Oryza sativa subsp. j... [more]
IMA1_ARATH1.866e-9680.09Importin subunit alpha-1 OS=Arabidopsis thaliana G... [more]
IMA1A_ORYSJ3.520e-9580.19Importin subunit alpha-1a OS=Oryza sativa subsp. j... [more]
IMA_SOLLC1.338e-9481.46Importin subunit alpha OS=Solanum lycopersicum PE=... [more]
IMA2_ARATH1.584e-8774.40Importin subunit alpha-2 OS=Arabidopsis thaliana G... [more]
IMA7_MOUSE5.481e-6460.00Importin subunit alpha-7 OS=Mus musculus GN=Kpna6 ... [more]
IMA7_BOVIN9.349e-6460.00Importin subunit alpha-7 OS=Bos taurus GN=KPNA6 PE... [more]
IMA7_PONAB2.083e-6360.00Importin subunit alpha-7 OS=Pongo abelii GN=KPNA6 ... [more]
IMA7_HUMAN2.083e-6360.00Importin subunit alpha-7 OS=Homo sapiens GN=KPNA6 ... [more]
IMA5_HUMAN2.720e-6359.24Importin subunit alpha-6 OS=Homo sapiens GN=KPNA5 ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001B08_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188947 ID=CN188947; Name=CN188947; organism=Citrus sinensis; type=EST; length=737bp
GCGGTTACCCTTCTCCTTCAGTGCTTATACCTGCTCTTCGCACAGTTGGC
AATATAGTCACCGGGGATGATATGCAAACTCAGTGCGTTATCGAATATCA
AGCACTGCCGTGCCTTCTTAATCTGTTGTCGGGCAATTATAAAAAGAGCA
TTAAAAAGGAAGCTTGTTGGACTGTCTCGAATATCACCGCTGGCAACAGG
GAGCAAATTCAGGCTGTGATTGAGGCTAACATAATTGGCCCCCTTGTTGC
TCTACTTGAAAATGCTGAGTTTGACATAAAGAAAGAGGCTGCATGGGCTA
TCTCAAACGCCACATCTGGTGGTACTCATGAGCAAATAAAATTCCTTGTG
ATTCAAGGGTGCATCAAGCCCTTGTGTGATCTTCTTGTATGTCCCGATCC
AAGAATTGTTACCGTCTGTCTGGAAGGGCTTGAGAACATATTGAAGGTGG
GAGAAGCCGAAAAGAATTTGGGCAACACAGATGTAAATGTCTTTACTCAA
ATGATTGATGATGCTGAGGGGTTAGAGAAAATTGAGAGTTTACAAACTCA
CGACAATGCTGAGATTTATGAGAAGTCTGTAAAGCTTCTGGAAACATATT
GGTTGGATGACGAGGATGAGACAATGCCACCAGGGGATGCTTCTCAACCT
GGTTTCGGATTTGGAGGCAATGGGAATCCTCCTGCTCCATCTGGTGGCTT
CAATTTCAGCTAGAGGAGTTTTAGCTGCTTTCATGTT
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