CN188944

Overview
NameCN188944
Unique NameCN188944
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length796
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8816 contig Csv1_Contig8816:107..905. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CN188944 vs. ExPASy Swiss-Prot
Match: TSJT1_TOBAC (Stem-specific protein TSJT1 OS=Nicotiana tabacum GN=TSJT1 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 5.184e-18
Identity = 40/70 (57.14%), Postives = 53/70 (75.71%), Query Frame = -2 
Query:  586 CLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLFVA 795
            C+F GALDN   LR+ YGL++ A E ++++EAYK LRDRAPYPP+ V+  L G FAFI++D   STLF+A
Sbjct:   79 CIFSGALDNTFDLRKHYGLSRQATEAMIMVEAYKVLRDRAPYPPDQVIKELEGKFAFILFDSKASTLFLA 148
The following BLAST results are available for this feature:
BLAST of CN188944 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
TSJT1_TOBAC5.184e-1857.14Stem-specific protein TSJT1 OS=Nicotiana tabacum G... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS06_0001B07_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001B07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188944 ID=CN188944; Name=CN188944; organism=Citrus sinensis; type=EST; length=796bp
TTTTTAGTTGACACTGGGACAAGACTTTATTAAACAGCAAACATAACTGT
ACATTGGACCACACTGGATAAAAGGTTAATTTGAAAGCAAACACCTAAGA
AACTTGAAAGGAGCTATAGCTACAAAGAAAGCTGGGTGCTACATTTCTCA
CAAGCATACACTATTTCCATTCCAGTTGATATTTTGCTACACTCATTTTG
TTATTCACATGGACCCTCTTGCAGCTTGCATCCCCACAAACTTTTTTTCC
CCCAAACCGCCGATTTTTAACTGTTGGCTAATATCTCAAGTCGAGAAGAA
ATATCTTCTAGCCTTCTACTCTGTGGCTGCAAGAACTGCTGGCCCTTCCA
CCTTAAATGTAGCACCCCAGATCTCTTCTTCCGCAGCAGGAACTGCAGTG
ATCTTGTTCTTTGGATTCTCAAAGCTTCTCAGTCCTCCAACTGCTGTTGA
GAAGAAACAACCTTGAGGGAAAGAAGCAAGTGACTTGCCGCAAGCACCTT
TGAGCAAGTCAGCATCATCAGCAAAGGCAACATGTCCATCAGCAGTGATT
CCCCAATAAAGAGGAACCTTACCAAATTGGTCAGAAGCCACAAACAAGGT
GGAGGTGGACTTGTCGTAGACAATGAAGGCAAAGTACCCACTAAGGTGGC
CAACGACATGGTTCGGTGGGTAAGGGGCCCGATCACGCAGAGCCTTGTAT
GCCTCAATCACCAAGATCACTTCATTTGCCGACTTAGCTAGTCCATATTG
CTGCCTCAGGCTTCCCAAGTTATCAAGTGCTCCCTCAAACAAGCAG
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