CN188933

Overview
NameCN188933
Unique NameCN188933
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length673
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12051 contig Csv1_Contig12051:108..780. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188933 vs. ExPASy Swiss-Prot
Match: UBP12_ARATH (Ubiquitin carboxyl-terminal hydrolase 12 OS=Arabidopsis thaliana GN=UBP12 PE=2 SV=2)

HSP 1 Score: 322.013 bits (824), Expect = 1.744e-87
Identity = 160/223 (71.75%), Postives = 176/223 (78.92%), Query Frame = 3
Query:    3 EDLAEQIGRDIYFDLVDHDKVRSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWIWAKRQNHTYRPNRPLLPQEEAQTVGQLREVSNKTHTAELRLFLEVEFGPDLHPIAPPDKSKDDILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGXXXXXXXXXXXXXXXXXCVMCEHLDKRTSFRLSQIEDGDIICFQKSPPLESEQECRYPDVPSFLE 671
            EDL EQIG+DIYFDLVDHDKVRSFR+QKQT F  FKEE+AKEFG+P+QLQRFWIWAKRQNHTYRPNRPL PQEE Q VGQ+RE SNK +TAEL+LFLEVE   DL PI PP+KSK+DILLFFKLYDPEK  L Y GRL +KSSSKP++I  KLN+M G                 CVMCEHLDK+TSFRL QIEDGDIICFQK P +  E EC YP VPSFLE
Sbjct:  576 EDLKEQIGKDIYFDLVDHDKVRSFRIQKQTPFQQFKEEVAKEFGVPVQLQRFWIWAKRQNHTYRPNRPLTPQEELQPVGQIREASNKANTAELKLFLEVEH-LDLRPIPPPEKSKEDILLFFKLYDPEKAVLSYAGRLMVKSSSKPMDITGKLNEMVGFAPDEEIELFEEIKFEPCVMCEHLDKKTSFRLCQIEDGDIICFQK-PLVNKEIECLYPAVPSFLE 796          
BLAST of CN188933 vs. ExPASy Swiss-Prot
Match: UBP13_ARATH (Ubiquitin carboxyl-terminal hydrolase 13 OS=Arabidopsis thaliana GN=UBP13 PE=1 SV=1)

HSP 1 Score: 316.235 bits (809), Expect = 9.570e-86
Identity = 152/223 (68.16%), Postives = 178/223 (79.82%), Query Frame = 3
Query:    3 EDLAEQIGRDIYFDLVDHDKVRSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWIWAKRQNHTYRPNRPLLPQEEAQTVGQLREVSNKTHTAELRLFLEVEFGPDLHPIAPPDKSKDDILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGXXXXXXXXXXXXXXXXXCVMCEHLDKRTSFRLSQIEDGDIICFQKSPPLESEQECRYPDVPSFLE 671
            +D+ EQIG++IYFDLVDH+KVRSFR+QKQT F  FKEE+AKEFG+P+QLQRFWIWAKRQNHTYRPNRPL P EE QTVGQ+RE SNK + AEL+LFLE+E GPD  PI PP+K+ +DILLFFKLYDPE   LRYVGRL +KSSSKP++I+ +LN+MAG                 CVMCE +DK+TSFRL QIEDGDIIC+QK   +E E E RYPDVPSFLE
Sbjct:  574 DDITEQIGKNIYFDLVDHEKVRSFRIQKQTPFQQFKEEVAKEFGVPVQLQRFWIWAKRQNHTYRPNRPLSPNEELQTVGQIREASNKANNAELKLFLEIERGPDDLPIPPPEKTSEDILLFFKLYDPENAVLRYVGRLMVKSSSKPMDIVGQLNKMAGFAPDEEIELFEEIKFEPCVMCEQIDKKTSFRLCQIEDGDIICYQKPLSIE-ESEFRYPDVPSFLE 795          
BLAST of CN188933 vs. ExPASy Swiss-Prot
Match: UBP7_RAT (Ubiquitin carboxyl-terminal hydrolase 7 OS=Rattus norvegicus GN=Usp7 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.038e-11
Identity = 58/204 (28.43%), Postives = 85/204 (41.67%), Query Frame = 3
Query:   42 DLVDHDKVRS--FRVQKQTSFMAFKEEIAKEFGIPIQLQRFWIWAKRQNHTYRPNRPLLPQEEAQTVGQLREVSNKTHTAELRLFLEVEFGPDLHPIAP--PDKSKD-DILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGXXXXXXXXXXXXXXXXXCVMCEHLDKRTSFRLSQIEDGDIICFQKSPPLESEQE 638
            D+ D +KVR   F+V K +S   F + +++  G P    R W    R N T    RP +   EA     + E+S+  +     +FLE    P+L       P   KD D++LF K+YDP+   L Y G ++   S K  ++L  +   AG                     +  D      L ++ DGDII FQK  P     E
Sbjct:  583 DMYDEEKVRYTVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWPMQARSNGT---KRPAMLDNEADGSKTMIELSDNENP--WTIFLET-VDPELAASGATLPKFDKDHDVMLFLKMYDPKTRSLNYCGHIYTPISCKIRDLLPVMCDRAGFIQDTSLILYEEVKPNLTERIQDYDVSLDKALDELMDGDIIVFQKDDPENDNSE 780          
BLAST of CN188933 vs. ExPASy Swiss-Prot
Match: UBP7_MOUSE (Ubiquitin carboxyl-terminal hydrolase 7 OS=Mus musculus GN=Usp7 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.661e-11
Identity = 58/204 (28.43%), Postives = 85/204 (41.67%), Query Frame = 3
Query:   42 DLVDHDKVRS--FRVQKQTSFMAFKEEIAKEFGIPIQLQRFWIWAKRQNHTYRPNRPLLPQEEAQTVGQLREVSNKTHTAELRLFLEVEFGPDLHPIAP--PDKSKD-DILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGXXXXXXXXXXXXXXXXXCVMCEHLDKRTSFRLSQIEDGDIICFQKSPPLESEQE 638
            D+ D +KVR   F+V K +S   F + +++  G P    R W    R N T    RP +   EA     + E+S+  +     +FLE    P+L       P   KD D++LF K+YDP+   L Y G ++   S K  ++L  +   AG                     +  D      L ++ DGDII FQK  P     E
Sbjct:  583 DMYDEEKVRYTVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWPMQARSNGT---KRPAMLDNEADGNKTMIELSDNENP--WTIFLET-VDPELAASGATLPKFDKDHDVMLFLKMYDPKTRSLNYCGHIYTPISCKIRDLLPVMCDRAGFIQDTSLILYEEVKPNLTERIQDYDVSLDKALDELMDGDIIVFQKDDPENDNSE 780          
BLAST of CN188933 vs. ExPASy Swiss-Prot
Match: UBP7_HUMAN (Ubiquitin carboxyl-terminal hydrolase 7 OS=Homo sapiens GN=USP7 PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 5.928e-11
Identity = 57/204 (27.94%), Postives = 85/204 (41.67%), Query Frame = 3
Query:   42 DLVDHDKVRS--FRVQKQTSFMAFKEEIAKEFGIPIQLQRFWIWAKRQNHTYRPNRPLLPQEEAQTVGQLREVSNKTHTAELRLFLEVEFGPDLHPIAP--PDKSKD-DILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGXXXXXXXXXXXXXXXXXCVMCEHLDKRTSFRLSQIEDGDIICFQKSPPLESEQE 638
            D+ D +KV+   F+V K +S   F + +++  G P    R W    R N T    RP +   EA     + E+S+  +     +FLE    P+L       P   KD D++LF K+YDP+   L Y G ++   S K  ++L  +   AG                     +  D      L ++ DGDII FQK  P     E
Sbjct:  582 DMYDEEKVKYTVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWPMQARSNGT---KRPAMLDNEADGNKTMIELSDNENP--WTIFLET-VDPELAASGATLPKFDKDHDVMLFLKMYDPKTRSLNYCGHIYTPISCKIRDLLPVMCDRAGFIQDTSLILYEEVKPNLTERIQDYDVSLDKALDELMDGDIIVFQKDDPENDNSE 779          
The following BLAST results are available for this feature:
BLAST of CN188933 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
UBP12_ARATH1.744e-8771.75Ubiquitin carboxyl-terminal hydrolase 12 OS=Arabid... [more]
UBP13_ARATH9.570e-8668.16Ubiquitin carboxyl-terminal hydrolase 13 OS=Arabid... [more]
UBP7_RAT2.038e-1128.43Ubiquitin carboxyl-terminal hydrolase 7 OS=Rattus ... [more]
UBP7_MOUSE2.661e-1128.43Ubiquitin carboxyl-terminal hydrolase 7 OS=Mus mus... [more]
UBP7_HUMAN5.928e-1127.94Ubiquitin carboxyl-terminal hydrolase 7 OS=Homo sa... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS06_0001A24_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001A24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188933 ID=CN188933; Name=CN188933; organism=Citrus sinensis; type=EST; length=673bp
ATGAGGACCTTGCAGAGCAGATTGGAAGGGATATATATTTTGACCTGGTG
GATCATGACAAAGTTCGTAGTTTCCGTGTTCAGAAACAAACGTCATTTAT
GGCTTTTAAGGAGGAAATTGCCAAAGAGTTTGGTATACCAATACAGCTTC
AGCGTTTTTGGATTTGGGCAAAGCGTCAAAATCATACATATCGTCCCAAT
AGACCATTGCTACCCCAGGAGGAAGCACAAACTGTTGGACAATTGAGAGA
GGTTTCAAATAAGACGCACACCGCCGAACTAAGGTTGTTCTTGGAAGTAG
AGTTTGGGCCGGATCTACATCCTATTGCTCCACCTGATAAATCTAAAGAT
GACATTCTGCTTTTCTTCAAGCTTTATGATCCCGAGAAAGGAGAACTTCG
ATATGTTGGTAGGCTATTTTTAAAGAGTTCCAGTAAGCCAATAGAAATTT
TGAGGAAGCTAAATCAAATGGCTGGCTTTGATCCTGATGAAGAAATAGAA
CTCTATGAGGAAATCAAGTTTGAGCCGTGTGTTATGTGTGAACATCTTGA
TAAGAGGACCTCATTCCGGTTAAGTCAGATTGAAGATGGAGATATCATCT
GCTTTCAGAAATCTCCTCCGCTCGAAAGTGAACAAGAATGCCGATATCCA
GATGTGCCTTCATTTTTGGAATA
back to top