CN188929

Overview
NameCN188929
Unique NameCN188929
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length615
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9469 contig Csv1_Contig9469:14..628. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN188929 vs. ExPASy Swiss-Prot
Match: EF1A_ORYSJ (Elongation factor 1-alpha OS=Oryza sativa subsp. japonica GN=REFA1 PE=2 SV=2)

HSP 1 Score: 347.051 bits (889), Expect = 4.298e-95
Identity = 170/178 (95.51%), Postives = 172/178 (96.63%), Query Frame = 1 
Query:   82 MGKEKTHINIVVIGHVDSGKSTTAGQLIYKLGGIDKRVIQRVEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCAVIDAPGHRDFIKNMITGTSQADCAVLISDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDAATPKYSKARYDEIVKEVSSYL 615
            MGKEKTHINIVVIGHVDSGKSTT G LIYKLGGIDKRVI+R EKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETT+YYC VIDAPGHRDFIKNMITGTSQADCAVLI DSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDA TPKYSKARYDEIVKEVSSYL
Sbjct:    1 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYL 178
[Close]
BLAST of CN188929 vs. ExPASy Swiss-Prot
Match: EF1A_MAIZE (Elongation factor 1-alpha OS=Zea mays GN=EF1A PE=3 SV=1)

HSP 1 Score: 347.051 bits (889), Expect = 4.298e-95
Identity = 170/178 (95.51%), Postives = 172/178 (96.63%), Query Frame = 1 
Query:   82 MGKEKTHINIVVIGHVDSGKSTTAGQLIYKLGGIDKRVIQRVEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCAVIDAPGHRDFIKNMITGTSQADCAVLISDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDAATPKYSKARYDEIVKEVSSYL 615
            MGKEKTHINIVVIGHVDSGKSTT G LIYKLGGIDKRVI+R EKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETT+YYC VIDAPGHRDFIKNMITGTSQADCAVLI DSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDA TPKYSKARYDEIVKEVSSYL
Sbjct:    1 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYL 178
[Close]
BLAST of CN188929 vs. ExPASy Swiss-Prot
Match: EF1A_WHEAT (Elongation factor 1-alpha OS=Triticum aestivum GN=TEF1 PE=2 SV=1)

HSP 1 Score: 345.51 bits (885), Expect = 1.251e-94
Identity = 169/178 (94.94%), Postives = 172/178 (96.63%), Query Frame = 1 
Query:   82 MGKEKTHINIVVIGHVDSGKSTTAGQLIYKLGGIDKRVIQRVEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCAVIDAPGHRDFIKNMITGTSQADCAVLISDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDAATPKYSKARYDEIVKEVSSYL 615
            MGKEKTHINIVVIGHVDSGKSTT G LIYKLGGIDKRVI+R EKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETT+YYC VIDAPGHRDFIKNMITGTSQADCAVLI DSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDA TPKYSKARY+EIVKEVSSYL
Sbjct:    1 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYEEIVKEVSSYL 178
[Close]
BLAST of CN188929 vs. ExPASy Swiss-Prot
Match: EF1A_MANES (Elongation factor 1-alpha OS=Manihot esculenta GN=EF1 PE=3 SV=1)

HSP 1 Score: 345.125 bits (884), Expect = 1.633e-94
Identity = 169/178 (94.94%), Postives = 171/178 (96.07%), Query Frame = 1 
Query:   82 MGKEKTHINIVVIGHVDSGKSTTAGQLIYKLGGIDKRVIQRVEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCAVIDAPGHRDFIKNMITGTSQADCAVLISDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDAATPKYSKARYDEIVKEVSSYL 615
            MGKEK HINIVVIGHVDSGKSTT G LIYKLGGIDKRVI+R EKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETT+YYC VIDAPGHRDFIKNMITGTSQADCAVLI DSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDA TPKYSKARYDEIVKEVSSYL
Sbjct:    1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYL 178
[Close]
BLAST of CN188929 vs. ExPASy Swiss-Prot
Match: EF1A_TOBAC (Elongation factor 1-alpha OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 344.354 bits (882), Expect = 2.786e-94
Identity = 169/178 (94.94%), Postives = 171/178 (96.07%), Query Frame = 1 
Query:   82 MGKEKTHINIVVIGHVDSGKSTTAGQLIYKLGGIDKRVIQRVEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCAVIDAPGHRDFIKNMITGTSQADCAVLISDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDAATPKYSKARYDEIVKEVSSYL 615
            MGKEK HINIVVIGHVDSGKSTT G LIYKLGGIDKRVI+R EKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETT+YYC VIDAPGHRDFIKNMITGTSQADCAVLI DSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDA TPKYSKARYDEIVKEVSSYL
Sbjct:    1 MGKEKFHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYL 178
[Close]
BLAST of CN188929 vs. ExPASy Swiss-Prot
Match: EF1A_ARATH (Elongation factor 1-alpha OS=Arabidopsis thaliana GN=A1 PE=1 SV=1)

HSP 1 Score: 343.969 bits (881), Expect = 3.639e-94
Identity = 168/178 (94.38%), Postives = 171/178 (96.07%), Query Frame = 1 
Query:   82 MGKEKTHINIVVIGHVDSGKSTTAGQLIYKLGGIDKRVIQRVEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCAVIDAPGHRDFIKNMITGTSQADCAVLISDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDAATPKYSKARYDEIVKEVSSYL 615
            MGKEK HINIVVIGHVDSGKSTT G LIYKLGGIDKRVI+R EKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETT+YYC VIDAPGHRDFIKNMITGTSQADCAVLI DSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDA TPKYSKARYDEI+KEVSSYL
Sbjct:    1 MGKEKFHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIIKEVSSYL 178
[Close]
BLAST of CN188929 vs. ExPASy Swiss-Prot
Match: EF1A_SOLLC (Elongation factor 1-alpha OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 342.813 bits (878), Expect = 8.106e-94
Identity = 168/178 (94.38%), Postives = 171/178 (96.07%), Query Frame = 1 
Query:   82 MGKEKTHINIVVIGHVDSGKSTTAGQLIYKLGGIDKRVIQRVEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCAVIDAPGHRDFIKNMITGTSQADCAVLISDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDAATPKYSKARYDEIVKEVSSYL 615
            MGKEK HI+IVVIGHVDSGKSTT G LIYKLGGIDKRVI+R EKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETT+YYC VIDAPGHRDFIKNMITGTSQADCAVLI DSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDA TPKYSKARYDEIVKEVSSYL
Sbjct:    1 MGKEKIHISIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYL 178
[Close]
BLAST of CN188929 vs. ExPASy Swiss-Prot
Match: EF1A_SOYBN (Elongation factor 1-alpha OS=Glycine max GN=TEFS1 PE=3 SV=2)

HSP 1 Score: 342.043 bits (876), Expect = 1.383e-93
Identity = 167/178 (93.82%), Postives = 171/178 (96.07%), Query Frame = 1 
Query:   82 MGKEKTHINIVVIGHVDSGKSTTAGQLIYKLGGIDKRVIQRVEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCAVIDAPGHRDFIKNMITGTSQADCAVLISDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDAATPKYSKARYDEIVKEVSSYL 615
            MGKEK HI+IVVIGHVDSGKSTT G LIYKLGGIDKRVI+R EKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETT+YYC VIDAPGHRDFIKNMITGTSQADCAVLI DSTTGGFEAGISKDGQTREHALL+FTLGVKQMICCCNKMDA TPKYSKARYDEIVKEVSSYL
Sbjct:    1 MGKEKVHISIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLSFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYL 178
[Close]
BLAST of CN188929 vs. ExPASy Swiss-Prot
Match: EF1A1_DAUCA (Elongation factor 1-alpha OS=Daucus carota PE=3 SV=1)

HSP 1 Score: 341.273 bits (874), Expect = 2.358e-93
Identity = 167/178 (93.82%), Postives = 169/178 (94.94%), Query Frame = 1 
Query:   82 MGKEKTHINIVVIGHVDSGKSTTAGQLIYKLGGIDKRVIQRVEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCAVIDAPGHRDFIKNMITGTSQADCAVLISDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDAATPKYSKARYDEIVKEVSSYL 615
            MGKEK HINIVVIGHVDSGKSTT G LIYKLGGIDKRVI+R EKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFET +YYC VIDAPGHRDFIKNMITGTSQADCAVLI D TTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDA TPKYSKARYDEIVKEVSSYL
Sbjct:    1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETNKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDPTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYL 178
[Close]
BLAST of CN188929 vs. ExPASy Swiss-Prot
Match: EF1A_VICFA (Elongation factor 1-alpha OS=Vicia faba PE=2 SV=1)

HSP 1 Score: 340.502 bits (872), Expect = 4.023e-93
Identity = 166/178 (93.26%), Postives = 170/178 (95.51%), Query Frame = 1 
Query:   82 MGKEKTHINIVVIGHVDSGKSTTAGQLIYKLGGIDKRVIQRVEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCAVIDAPGHRDFIKNMITGTSQADCAVLISDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDAATPKYSKARYDEIVKEVSSYL 615
            MGKEK HINIVVIGHVDSGKSTT G LIYKLGGIDKRVI+R EKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFET++YYC VIDAPGHRDFIKNMITGTSQADCAVLI DSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDA TPKYSK RY+EIVKEVSSYL
Sbjct:    1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETSKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKGRYEEIVKEVSSYL 178
The following BLAST results are available for this feature:
BLAST of CN188929 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EF1A_ORYSJ4.298e-9595.51Elongation factor 1-alpha OS=Oryza sativa subsp. j... [more]
EF1A_MAIZE4.298e-9595.51Elongation factor 1-alpha OS=Zea mays GN=EF1A PE=3... [more]
EF1A_WHEAT1.251e-9494.94Elongation factor 1-alpha OS=Triticum aestivum GN=... [more]
EF1A_MANES1.633e-9494.94Elongation factor 1-alpha OS=Manihot esculenta GN=... [more]
EF1A_TOBAC2.786e-9494.94Elongation factor 1-alpha OS=Nicotiana tabacum PE=... [more]
EF1A_ARATH3.639e-9494.38Elongation factor 1-alpha OS=Arabidopsis thaliana ... [more]
EF1A_SOLLC8.106e-9494.38Elongation factor 1-alpha OS=Solanum lycopersicum ... [more]
EF1A_SOYBN1.383e-9393.82Elongation factor 1-alpha OS=Glycine max GN=TEFS1 ... [more]
EF1A1_DAUCA2.358e-9393.82Elongation factor 1-alpha OS=Daucus carota PE=3 SV... [more]
EF1A_VICFA4.023e-9393.26Elongation factor 1-alpha OS=Vicia faba PE=2 SV=1[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS06_0001A22_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001A22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188929 ID=CN188929; Name=CN188929; organism=Citrus sinensis; type=EST; length=615bp
GAGGCTCAATTTCCGAAGGGAGGCGAGAGAGAACCATTTTCGCGAATATC
ATTTTAATAAGGTTTTTTCTACATTTGCCTAATGGGTAAGGAGAAGACTC
ACATCAACATTGTGGTCATCGGCCATGTCGACTCTGGAAAGTCGACCACC
GCCGGACAGTTGATCTACAAGCTTGGTGGTATTGACAAGCGTGTGATCCA
GAGGGTCGAGAAGGAAGCTGCTGAGATGAACAAGAGGTCATTCAAATACG
CCTGGGTGCTCGACAAGCTCAAGGCTGAGCGTGAACGTGGGATTACCATT
GATATTGCCTTGTGGAAGTTCGAGACCACCAGGTACTACTGCGCCGTCAT
TGATGCTCCCGGACATCGTGACTTTATCAAGAACATGATTACCGGTACCT
CACAGGCTGACTGTGCTGTCCTCATCAGTGACTCTACCACTGGTGGTTTT
GAAGCTGGTATCTCCAAGGATGGTCAGACTCGAGAGCATGCTTTGCTTGC
TTTCACCCTTGGTGTGAAGCAGATGATTTGCTGCTGTAACAAGATGGACG
CCGCCACCCCCAAGTATTCAAAGGCTAGGTACGATGAAATTGTGAAGGAG
GTCTCTTCCTACCTG
back to top