CN188923

Overview
NameCN188923
Unique NameCN188923
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length565
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6751 contig Csv1_Contig6751:495..1059. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188923 vs. ExPASy Swiss-Prot
Match: ILVB2_TOBAC (Acetolactate synthase 2, chloroplastic OS=Nicotiana tabacum GN=ALS SURB PE=1 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 3.283e-56
Identity = 102/119 (85.71%), Postives = 111/119 (93.28%), Query Frame = -3
Query:  207 KVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGILGAQVTRKADLRAAIQTMLDTPGPYLLDVIVPHQEHVLPMIPSGGAFKDVITEGDGRTQY 563
            KVE LP+KI+LLNNQHLGMV+QWEDRFYKANRAHTYLG+PS E+EIFPNMLKFAEACG+  A+VT + DLRAAIQ MLDTPGPYLLDVIVPHQEHVLPMIPSGGAFKDVITEGDGR+ Y
Sbjct:  546 KVENLPVKIMLLNNQHLGMVVQWEDRFYKANRAHTYLGNPSNEAEIFPNMLKFAEACGVPAARVTHRDDLRAAIQKMLDTPGPYLLDVIVPHQEHVLPMIPSGGAFKDVITEGDGRSSY 664          
BLAST of CN188923 vs. ExPASy Swiss-Prot
Match: ILVB1_TOBAC (Acetolactate synthase 1, chloroplastic OS=Nicotiana tabacum GN=ALS SURA PE=1 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 3.283e-56
Identity = 102/119 (85.71%), Postives = 111/119 (93.28%), Query Frame = -3
Query:  207 KVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGILGAQVTRKADLRAAIQTMLDTPGPYLLDVIVPHQEHVLPMIPSGGAFKDVITEGDGRTQY 563
            KVE LP+KI+LLNNQHLGMV+QWEDRFYKANRAHTYLG+PS E+EIFPNMLKFAEACG+  A+VT + DLRAAIQ MLDTPGPYLLDVIVPHQEHVLPMIPSGGAFKDVITEGDGR+ Y
Sbjct:  549 KVENLPVKIMLLNNQHLGMVVQWEDRFYKANRAHTYLGNPSNEAEIFPNMLKFAEACGVPAARVTHRDDLRAAIQKMLDTPGPYLLDVIVPHQEHVLPMIPSGGAFKDVITEGDGRSSY 667          
BLAST of CN188923 vs. ExPASy Swiss-Prot
Match: ILVB3_BRANA (Acetolactate synthase 3, chloroplastic OS=Brassica napus PE=3 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 4.288e-56
Identity = 102/119 (85.71%), Postives = 111/119 (93.28%), Query Frame = -3
Query:  207 KVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGILGAQVTRKADLRAAIQTMLDTPGPYLLDVIVPHQEHVLPMIPSGGAFKDVITEGDGRTQY 563
            +VE LP+KILLLNNQHLGMVMQWEDRFYKANRAHTYLGDP+RE+EIFPNML+FA ACGI  A+VT+K +LR AIQTMLDTPGPYLLDVI PHQEHVLPMIPSGG FKDVITEGDGRT+Y
Sbjct:  534 RVENLPVKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPARENEIFPNMLQFAGACGIPAARVTKKEELREAIQTMLDTPGPYLLDVICPHQEHVLPMIPSGGTFKDVITEGDGRTKY 652          
BLAST of CN188923 vs. ExPASy Swiss-Prot
Match: ILVB1_BRANA (Acetolactate synthase 1, chloroplastic OS=Brassica napus PE=3 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 4.288e-56
Identity = 102/119 (85.71%), Postives = 111/119 (93.28%), Query Frame = -3
Query:  207 KVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGILGAQVTRKADLRAAIQTMLDTPGPYLLDVIVPHQEHVLPMIPSGGAFKDVITEGDGRTQY 563
            +VE LP+KILLLNNQHLGMVMQWEDRFYKANRAHTYLGDP+RE+EIFPNML+FA ACGI  A+VT+K +LR AIQTMLDTPGPYLLDVI PHQEHVLPMIPSGG FKDVITEGDGRT+Y
Sbjct:  537 RVENLPVKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPARENEIFPNMLQFAGACGIPAARVTKKEELREAIQTMLDTPGPYLLDVICPHQEHVLPMIPSGGTFKDVITEGDGRTKY 655          
BLAST of CN188923 vs. ExPASy Swiss-Prot
Match: ILVB_ARATH (Acetolactate synthase, chloroplastic OS=Arabidopsis thaliana GN=CSR 1.2 PE=1 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 1.802e-54
Identity = 99/119 (83.19%), Postives = 108/119 (90.76%), Query Frame = -3
Query:  207 KVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGILGAQVTRKADLRAAIQTMLDTPGPYLLDVIVPHQEHVLPMIPSGGAFKDVITEGDGRTQY 563
            +VE LP+K+LLLNNQHLGMVMQWEDRFYKANRAHT+LGDP++E EIFPNML FA ACGI  A+VT+KADLR AIQTMLDTPGPYLLDVI PHQEHVLPMIPSGG F DVITEGDGR +Y
Sbjct:  552 RVENLPVKVLLLNNQHLGMVMQWEDRFYKANRAHTFLGDPAQEDEIFPNMLLFAAACGIPAARVTKKADLREAIQTMLDTPGPYLLDVICPHQEHVLPMIPSGGTFNDVITEGDGRIKY 670          
BLAST of CN188923 vs. ExPASy Swiss-Prot
Match: ILVB1_ORYSJ (Acetolactate synthase 1, chloroplastic OS=Oryza sativa subsp. japonica GN=ALS1 PE=2 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 3.080e-46
Identity = 82/119 (68.91%), Postives = 104/119 (87.39%), Query Frame = -3
Query:  207 KVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGILGAQVTRKADLRAAIQTMLDTPGPYLLDVIVPHQEHVLPMIPSGGAFKDVITEGDGRTQY 563
            ++E LP+K+++LNNQHLGMV+QWEDRFYKANRAHTYLG+P  ESEI+P+ +  A+   I   +VT+K+++RAAI+ ML+TPGPYLLD+IVPHQEHVLPMIPSGGAFKD+I +GDGRT Y
Sbjct:  526 RIENLPVKVMVLNNQHLGMVVQWEDRFYKANRAHTYLGNPECESEIYPDFVTIAKGFNIPAVRVTKKSEVRAAIKKMLETPGPYLLDIIVPHQEHVLPMIPSGGAFKDMILDGDGRTVY 644          
BLAST of CN188923 vs. ExPASy Swiss-Prot
Match: ILVB1_MAIZE (Acetolactate synthase 1, chloroplastic OS=Zea mays GN=ALS1 PE=3 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 5.254e-46
Identity = 82/119 (68.91%), Postives = 102/119 (85.71%), Query Frame = -3
Query:  207 KVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGILGAQVTRKADLRAAIQTMLDTPGPYLLDVIVPHQEHVLPMIPSGGAFKDVITEGDGRTQY 563
            ++E LP+K+ +LNNQHLGMV+QWEDRFYKANRAHTYLG+P  ESEI+P+ +  A+   I   +VT+K ++RAAI+ ML+TPGPYLLD+IVPHQEHVLPMIPSGGAFKD+I +GDGRT Y
Sbjct:  520 RIENLPVKVFVLNNQHLGMVVQWEDRFYKANRAHTYLGNPENESEIYPDFVTIAKGFNIPAVRVTKKNEVRAAIKKMLETPGPYLLDIIVPHQEHVLPMIPSGGAFKDMILDGDGRTVY 638          
BLAST of CN188923 vs. ExPASy Swiss-Prot
Match: ILVB2_MAIZE (Acetolactate synthase 2, chloroplastic OS=Zea mays GN=ALS2 PE=3 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 9.909e-45
Identity = 79/119 (66.39%), Postives = 101/119 (84.87%), Query Frame = -3
Query:  207 KVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGILGAQVTRKADLRAAIQTMLDTPGPYLLDVIVPHQEHVLPMIPSGGAFKDVITEGDGRTQY 563
            ++E LP+K+ +LNNQHLGMV+QWEDRFYKANRAHT+LG+P  ESEI+P+ +  A+   I   +VT+K+++ AAI+ ML+ PGPYLLD+IVPHQEHVLPMIPSGGAFKD+I +GDGRT Y
Sbjct:  520 RIENLPVKVFVLNNQHLGMVVQWEDRFYKANRAHTFLGNPENESEIYPDFVAIAKGFNIPAVRVTKKSEVHAAIKKMLEAPGPYLLDIIVPHQEHVLPMIPSGGAFKDMILDGDGRTVY 638          
BLAST of CN188923 vs. ExPASy Swiss-Prot
Match: ILVB2_BRANA (Acetolactate synthase 2, chloroplastic OS=Brassica napus PE=3 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 1.582e-42
Identity = 76/110 (69.09%), Postives = 94/110 (85.45%), Query Frame = -3
Query:  234 KVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGILGAQVTRKADLRAAIQTMLDTPGPYLLDVIVPHQEHVLPMIPSGGAFKDVI 563
            +VE LP+K+LL+NNQHLGMV+QWED FY ANRA ++LGDP+    +FP+ML FA +CGI  A+VTR+ DLR AIQTMLDTPGP+LLDV+ PHQ+HVLP+IPSGG FKD+I
Sbjct:  527 RVENLPVKVLLINNQHLGMVLQWEDHFYAANRADSFLGDPANPEAVFPDMLLFAASCGIPAARVTRREDLREAIQTMLDTPGPFLLDVVCPHQDHVLPLIPSGGTFKDII 636          
BLAST of CN188923 vs. ExPASy Swiss-Prot
Match: ILVB2_ORYSJ (Probable acetolactate synthase 2, chloroplastic OS=Oryza sativa subsp. japonica GN=ALS2 PE=2 SV=2)

HSP 1 Score: 171.785 bits (434), Expect = 2.066e-42
Identity = 77/121 (63.64%), Postives = 99/121 (81.82%), Query Frame = -3
Query:  207 KVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRES--EIFPNMLKFAEACGILGAQVTRKADLRAAIQTMLDTPGPYLLDVIVPHQEHVLPMIPSGGAFKDVITEGDGRTQY 563
            +VE LP+K+++LNNQHLGMV+QWEDRFY ANRAHTYLG+P+     E++P+ +  A   GI  A+VTRK ++RAA++ M+  PGPYLLDV+VPHQEHVLPMIPS GAFKD+I +GDGR+ Y
Sbjct:  543 RVEDLPVKVMVLNNQHLGMVVQWEDRFYDANRAHTYLGNPAANGGGEVYPDFVTIAGGFGIPAARVTRKGEVRAAVEEMMAAPGPYLLDVVVPHQEHVLPMIPSNGAFKDIIVDGDGRSSY 663          
The following BLAST results are available for this feature:
BLAST of CN188923 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
ILVB2_TOBAC3.283e-5685.71Acetolactate synthase 2, chloroplastic OS=Nicotian... [more]
ILVB1_TOBAC3.283e-5685.71Acetolactate synthase 1, chloroplastic OS=Nicotian... [more]
ILVB3_BRANA4.288e-5685.71Acetolactate synthase 3, chloroplastic OS=Brassica... [more]
ILVB1_BRANA4.288e-5685.71Acetolactate synthase 1, chloroplastic OS=Brassica... [more]
ILVB_ARATH1.802e-5483.19Acetolactate synthase, chloroplastic OS=Arabidopsi... [more]
ILVB1_ORYSJ3.080e-4668.91Acetolactate synthase 1, chloroplastic OS=Oryza sa... [more]
ILVB1_MAIZE5.254e-4668.91Acetolactate synthase 1, chloroplastic OS=Zea mays... [more]
ILVB2_MAIZE9.909e-4566.39Acetolactate synthase 2, chloroplastic OS=Zea mays... [more]
ILVB2_BRANA1.582e-4269.09Acetolactate synthase 2, chloroplastic OS=Brassica... [more]
ILVB2_ORYSJ2.066e-4263.64Probable acetolactate synthase 2, chloroplastic OS... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001A19_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001A19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188923 ID=CN188923; Name=CN188923; organism=Citrus sinensis; type=EST; length=565bp
TTTTTTTTTTTTTTACTCAGACACAAACAAATTATAATAACATTGTAACT
CATAGAGTTTGTTTGTTAAACAAACACTAGTTCCATTAAAACTGACACCT
GAACTAAAAACACTGCCACACACTCATAGGTAAGTTAAGCCTGCAACTCA
AAAGGAACATAAATACATAGCCAAGAAGGCATCTATGCTGCTTCAGCTTG
TCGTTAATACTGCGTTCTTCCATCACCTTCAGTGATCACATCTTTAAAAG
CTCCACCACTGGGGATCATAGGCAGGACATGCTCTTGATGAGGAACGATG
ACGTCCAGAAGGTATGGTCCAGGAGTGTCCAACATAGTCTGAATTGCGGC
TCTCAAATCTGCCTTCCTTGTTACTTGTGCTCCAAGTATTCCACAGGCTT
CTGCAAACTTCAACATATTCGGAAATATTTCAGACTCTCTTGATGGATCT
CCCAAATACGTGTGAGCCCTATTTGCCTTGTAAAACCGATCCTCCCATTG
CATCACCATGCCCAAGTGCTGATTATTCAACAGCAATATCTTGATGGGGA
GTTTCTCTACCTTAA
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