CN188922

Overview
NameCN188922
Unique NameCN188922
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length789
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN188922_ssr99 microsatellite CN188922_ssr99:99..116. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1526 contig Csv1_Contig1526:22..810. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188922 vs. ExPASy Swiss-Prot
Match: AAPC_CENCI (Putative glucose-6-phosphate 1-epimerase OS=Cenchrus ciliaris PE=2 SV=1)

HSP 1 Score: 345.51 bits (885), Expect = 1.952e-94
Identity = 162/209 (77.51%), Postives = 183/209 (87.56%), Query Frame = 3
Query:  159 EFCKGNNGLDKIVLRESRGSSAEVYLYGGHVTSWKNDHGEELLFVSSKATFKPPKAIRGGIPICFPQFASHGSLESHGFARNRFWSIDTDPPAFPTNSSSKAYIDLILRPSEEDLKIWPHSFEFRLRVALTPGGDLMLISRVRNTSTDGKPFSFTFAYHTYFSVSDISEVRVEGLETLDYLDNLQNKERFTEQGDAITFESEVDKIYLS 785
            E  K  +GL+K+VLR +R   AE+YLYGG VTSWKND+GEELLF+SSKA FKPPKAIRGGIPIC PQF +HG+LE HGFARNRFWSID DPP  P N + KA++DLILRP+EEDLKIWPHSFEFRLRVAL P GDL L SR+RNT+TDG+PFS+TFAYHTYF VSDISEVRVEGLET+DYLDNL+ KERFTEQGDAI FESEVDK+YL+
Sbjct:   25 ELVKTPSGLEKVVLRGARNCCAEIYLYGGQVTSWKNDNGEELLFLSSKAIFKPPKAIRGGIPICLPQFGTHGNLEQHGFARNRFWSIDNDPPPLPVNPAIKAFVDLILRPAEEDLKIWPHSFEFRLRVALGPSGDLSLTSRIRNTNTDGRPFSYTFAYHTYFFVSDISEVRVEGLETMDYLDNLKAKERFTEQGDAIVFESEVDKVYLA 233          
BLAST of CN188922 vs. ExPASy Swiss-Prot
Match: YEAD_ECOLI (Putative glucose-6-phosphate 1-epimerase OS=Escherichia coli (strain K12) GN=yeaD PE=1 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 4.156e-20
Identity = 74/225 (32.89%), Postives = 108/225 (48.00%), Query Frame = 3
Query:  123 FKIMSTEKFLPVEFCKGNNGLDKIVLRESRGSSAEVYLYGGHVTSWKNDHGEELLFVSSKATFKPPKAIRGGIPICFPQF--ASHGSLESHGFARNRFWSIDTDPPAFPTNSSSKAYIDLILRPSEEDLKIWPHSFEF--RLRVALTPGGDLMLISRVRNTSTDGKPFSFTFAYHTYFSVSDISEVRVEGLETLDYLDNLQNKERFTEQGDAITFESEVDKIYLS 785
            F +   E+  PV   +  + LD IV+   +   A   L G H+ SWK    EE+L++S+   FK   AIRGG+P+C+P F  A+   L +HGFARN  W++ +         +    +   L  SEE  K WPH F      RV  T   DL          + G+ F  T A HTYF+V DI++V V GL    ++D + + +         TF    D++YL+
Sbjct:    6 FALPVIEQISPVLSRRKLDELDLIVVDHPQ-VKASFALQGAHLLSWKPAGEEEVLWLSNNTPFKNGVAIRGGVPVCWPWFGPAAQQGLPAHGFARNLPWTLKSH-----HEDADGVALTFELTQSEETKKFWPHDFTLLAHFRVGKTCEIDL---------ESHGE-FETTSALHTYFNVGDIAKVSVSGLGD-RFIDKVNDAKENVLTDGIQTFPDRTDRVYLN 213          
BLAST of CN188922 vs. ExPASy Swiss-Prot
Match: YMY9_YEAST (Glucose-6-phosphate 1-epimerase OS=Saccharomyces cerevisiae GN=YMR099C PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.641e-16
Identity = 64/198 (32.32%), Postives = 88/198 (44.44%), Query Frame = 3
Query:  216 SSAEVYLYGGHVTSWKNDHGEELLFVSSKATFKPPKAIRGGIPICFPQFASHGS------LESHGFARNRFWSIDTDPPAFPTNSSSKAYIDLILRP---SEEDLKIWPHSFEFRLRVALTPGGD-LMLISRVRNTSTDGKPFSFTFAYHTYFSVSDISEVRVEGLETLDYLDNLQNKERFTEQGDAITFESEVDKIY 779
            +S  +  YG  V SWK    EE L++S+ A     K +RGGIP+ FP F  + +      L  HG ARN  W              +   +   L+P   + E  K+WP  +   L V L  G D L     V NTS+  K   F + +HTYF + DI    V  L  +   D L  KE + ++   +TF  E D IY
Sbjct:   20 TSVHILKYGATVYSWKLK-SEEQLWLSTAAKLDGSKPVRGGIPLVFPVFGKNSTDEHLSKLPQHGLARNSTWEF------LGQTKENPPTVQFGLKPEIANPELTKLWPMDYLLILTVEL--GSDYLKTAIEVENTSS-SKELKFNWLFHTYFRIEDIEGTMVSNLAGMKLYDQLL-KESYVDKHPVVTFNQETDVIY 206          
The following BLAST results are available for this feature:
BLAST of CN188922 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
AAPC_CENCI1.952e-9477.51Putative glucose-6-phosphate 1-epimerase OS=Cenchr... [more]
YEAD_ECOLI4.156e-2032.89Putative glucose-6-phosphate 1-epimerase OS=Escher... [more]
YMY9_YEAST3.641e-1632.32Glucose-6-phosphate 1-epimerase OS=Saccharomyces c... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS06_0001A18_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001A18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188922 ID=CN188922; Name=CN188922; organism=Citrus sinensis; type=EST; length=789bp
TCTCGCTCTACTGAAGTGAGCTAACACTAAGTGAGAGAGATTTCATTTTC
ATATCGAATGCTGTGAATTTTCACATCAAACGAAGAGTAGAAAATCTTGG
CGGCGGCGGCGGCGGCAGCGGCTTCAAAATCATGTCGACGGAGAAGTTTC
TTCCAGTTGAGTTCTGCAAGGGCAATAACGGCCTCGACAAGATCGTTCTC
CGCGAGTCACGCGGCAGCTCCGCTGAGGTGTATTTGTACGGGGGTCATGT
GACGTCTTGGAAGAATGATCATGGAGAGGAATTGCTTTTTGTCAGTAGTA
AGGCTACATTCAAGCCTCCCAAAGCGATTCGCGGAGGAATTCCAATCTGC
TTTCCTCAGTTTGCAAGTCATGGCTCTCTGGAGTCGCATGGGTTTGCTAG
AAATCGGTTTTGGAGTATTGACACTGACCCGCCTGCTTTTCCAACTAATT
CCTCGAGTAAGGCTTATATTGATTTGATACTAAGGCCCTCGGAAGAAGAT
CTGAAGATCTGGCCTCACAGTTTTGAGTTCCGTCTCAGGGTAGCTTTGAC
TCCTGGTGGTGATCTGATGTTGATCTCTCGCGTTAGGAATACTAGCACTG
ATGGAAAGCCATTTTCGTTCACATTTGCATATCATACCTATTTCTCTGTT
TCAGACATCAGTGAAGTTCGTGTTGAAGGATTGGAGACACTGGATTACCT
CGACAACTTGCAGAATAAGGAGCGTTTTACTGAACAAGGGGATGCAATAA
CATTTGAATCAGAAGTGGACAAGATATACCTCAGTACTC
back to top