CN182137

Overview
NameCN182137
Unique NameCN182137
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length522
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4784 contig Csv1_Contig4784:370..891. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN182137 vs. ExPASy Swiss-Prot
Match: UBC4_SOLLC (Ubiquitin-conjugating enzyme E2-17 kDa OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 4.527e-51
Identity = 93/95 (97.89%), Postives = 94/95 (98.95%), Query Frame = -3
Query:  236 IHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLFDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYSMG 520
            IHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLL DPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKY+MG
Sbjct:   54 IHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAMG 148          
BLAST of CN182137 vs. ExPASy Swiss-Prot
Match: UBC28_ARATH (Ubiquitin carrier protein E2 28 OS=Arabidopsis thaliana GN=UBC28 PE=2 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 1.720e-50
Identity = 91/95 (95.79%), Postives = 94/95 (98.95%), Query Frame = -3
Query:  236 IHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLFDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYSMG 520
            IHFPPDYPFKPPKVAFRTKVFHPN+NSNGSICLDILKEQWSPALTISKVLLSICSLL DPNPDDPLVPEIAHMYKTDRAKYE+TARSWTQKY+MG
Sbjct:   54 IHFPPDYPFKPPKVAFRTKVFHPNVNSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYESTARSWTQKYAMG 148          
BLAST of CN182137 vs. ExPASy Swiss-Prot
Match: UBC8_ARATH (Ubiquitin-conjugating enzyme E2 8 OS=Arabidopsis thaliana GN=UBC8 PE=1 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 3.833e-50
Identity = 91/95 (95.79%), Postives = 93/95 (97.89%), Query Frame = -3
Query:  236 IHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLFDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYSMG 520
            IHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLL DPNPDDPLVPEIAHMYKTDRAKYE TAR+WTQKY+MG
Sbjct:   54 IHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYEATARNWTQKYAMG 148          
BLAST of CN182137 vs. ExPASy Swiss-Prot
Match: UBC10_ARATH (Ubiquitin-conjugating enzyme E2 10 OS=Arabidopsis thaliana GN=UBC10 PE=1 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 1.456e-49
Identity = 90/95 (94.74%), Postives = 93/95 (97.89%), Query Frame = -3
Query:  236 IHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLFDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYSMG 520
            IHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLL DPNPDDPLVPEIAHMYKTD+ KYE+TARSWTQKY+MG
Sbjct:   54 IHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKNKYESTARSWTQKYAMG 148          
BLAST of CN182137 vs. ExPASy Swiss-Prot
Match: UBC9_ARATH (SUMO-conjugating enzyme UBC9 OS=Arabidopsis thaliana GN=UBC9 PE=1 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 3.245e-49
Identity = 89/95 (93.68%), Postives = 93/95 (97.89%), Query Frame = -3
Query:  236 IHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLFDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYSMG 520
            IHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLL DPNPDDPLVPEIAHMYKTD+ KYE+TAR+WTQKY+MG
Sbjct:   54 IHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKNKYESTARTWTQKYAMG 148          
BLAST of CN182137 vs. ExPASy Swiss-Prot
Match: UBC11_ARATH (Ubiquitin-conjugating enzyme E2 11 OS=Arabidopsis thaliana GN=UBC11 PE=2 SV=2)

HSP 1 Score: 194.126 bits (492), Expect = 3.245e-49
Identity = 88/95 (92.63%), Postives = 94/95 (98.95%), Query Frame = -3
Query:  236 IHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLFDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYSMG 520
            IHFPPDYPFKPPKV+F+TKV+HPNINSNGSICLDILKEQWSPALTISKVLLSICSLL DPNPDDPLVPEIAHMYKTDR+KYE+TARSWTQKY+MG
Sbjct:   54 IHFPPDYPFKPPKVSFKTKVYHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYESTARSWTQKYAMG 148          
BLAST of CN182137 vs. ExPASy Swiss-Prot
Match: UBC30_ARATH (Ubiquitin carrier protein E2 30 OS=Arabidopsis thaliana GN=UBC30 PE=2 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 9.440e-49
Identity = 87/95 (91.58%), Postives = 93/95 (97.89%), Query Frame = -3
Query:  236 IHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLFDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYSMG 520
            IHFPPDYPFKPPKVAFRTKV+HPNINSNGSICLDILKEQWSPALT+SKVLLSICSLL DPNPDDPLVPEIAH+YKTDR KYE+TA+SWTQKY+MG
Sbjct:   54 IHFPPDYPFKPPKVAFRTKVYHPNINSNGSICLDILKEQWSPALTVSKVLLSICSLLTDPNPDDPLVPEIAHIYKTDRVKYESTAQSWTQKYAMG 148          
BLAST of CN182137 vs. ExPASy Swiss-Prot
Match: UBC29_ARATH (Ubiquitin carrier protein E2 29 OS=Arabidopsis thaliana GN=UBC29 PE=2 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 2.571e-46
Identity = 83/94 (88.30%), Postives = 89/94 (94.68%), Query Frame = -3
Query:  239 IHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLFDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYSM 520
            IHFPPDYPFKPPKV FRTKVFHPNINSNG+ICLDILK+QWSPALTISKVLLSICSLL DPNPDDPLVPEIAH+YKTD+ KYE  ARSWTQKY++
Sbjct:   54 IHFPPDYPFKPPKVVFRTKVFHPNINSNGNICLDILKDQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHIYKTDKTKYEAMARSWTQKYAL 147          
BLAST of CN182137 vs. ExPASy Swiss-Prot
Match: UBC1_COLGL (Ubiquitin-conjugating enzyme E2-16 kDa OS=Colletotrichum gloeosporioides GN=UBC1 PE=2 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 4.538e-43
Identity = 76/94 (80.85%), Postives = 88/94 (93.62%), Query Frame = -3
Query:  239 IHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLFDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYSM 520
            IHFP DYPFKPPKV F T+++HPNINSNGSICLDIL++QWSPALTISKVLLSICS+L DPNPD+PLVPEIAH+YKTDRA+YE TAR WT+KY++
Sbjct:   54 IHFPTDYPFKPPKVNFTTRIYHPNINSNGSICLDILRDQWSPALTISKVLLSICSMLTDPNPDEPLVPEIAHVYKTDRARYEATAREWTRKYAI 147          
BLAST of CN182137 vs. ExPASy Swiss-Prot
Match: UB2D4_HUMAN (Ubiquitin-conjugating enzyme E2 D4 OS=Homo sapiens GN=UBE2D4 PE=1 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 5.927e-43
Identity = 78/94 (82.98%), Postives = 83/94 (88.30%), Query Frame = -3
Query:  239 IHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLFDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYSM 520
            IHFP DYPFKPPKVAF TK++HPNINSNGSICLDIL+ QWSPALT+SKVLLSICSLL DPNPDDPLVPEIAH YK DR KY   AR WTQKY+M
Sbjct:   54 IHFPTDYPFKPPKVAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPEIAHTYKADREKYNRLAREWTQKYAM 147          
The following BLAST results are available for this feature:
BLAST of CN182137 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 216
Match NameE-valueIdentityDescription
UBC4_SOLLC4.527e-5197.89Ubiquitin-conjugating enzyme E2-17 kDa OS=Solanum ... [more]
UBC28_ARATH1.720e-5095.79Ubiquitin carrier protein E2 28 OS=Arabidopsis tha... [more]
UBC8_ARATH3.833e-5095.79Ubiquitin-conjugating enzyme E2 8 OS=Arabidopsis t... [more]
UBC10_ARATH1.456e-4994.74Ubiquitin-conjugating enzyme E2 10 OS=Arabidopsis ... [more]
UBC9_ARATH3.245e-4993.68SUMO-conjugating enzyme UBC9 OS=Arabidopsis thalia... [more]
UBC11_ARATH3.245e-4992.63Ubiquitin-conjugating enzyme E2 11 OS=Arabidopsis ... [more]
UBC30_ARATH9.440e-4991.58Ubiquitin carrier protein E2 30 OS=Arabidopsis tha... [more]
UBC29_ARATH2.571e-4688.30Ubiquitin carrier protein E2 29 OS=Arabidopsis tha... [more]
UBC1_COLGL4.538e-4380.85Ubiquitin-conjugating enzyme E2-16 kDa OS=Colletot... [more]
UB2D4_HUMAN5.927e-4382.98Ubiquitin-conjugating enzyme E2 D4 OS=Homo sapiens... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0002A03_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0002A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182137 ID=CN182137; Name=CN182137; organism=Citrus sinensis; type=EST; length=522bp
TTTTTTTTTTTTTTTTTAATAATGGAAAAGGCAGCTCAATTCTGCAGTAA
ATTATAATTTAAGTATTGAAGAACAATGCTAAATTTGAAAGTAACCCCAC
ATAAAACCTTTTAACAACTTAGTAAACAAAACCAAATATCGTCTTTTAAT
ATCTGAAACAAACTTATTTCTATTATTTACTAATAGGACCACAAGCCATT
AATGTTCTCAGGGGCATACAGCCTAGCCCCTCTTAACCCATGGAATACTT
CTGAGTCCAGGATCGAGCAGTAGTCTCATATTTGGCTCTGTCAGTCTTGT
ACATGTGAGCAATCTCAGGCACTAGTGGGTCATCTGGGTTCGGATCAAAA
AGTAGTGAGCAAATTGACAGAAGTACCTTGGATATTGTCAAAGCAGGGCT
CCACTGCTCCTTGAGAATGTCAAGACAGATGCTACCATTGCTGTTGATGT
TAGGGTGGAAAACCTTAGTACGGAAGGCCACCTTCGGTGGCTTGAATGGA
TAATCAGGTGGGAAATGAATGG
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