CN188898

Overview
NameCN188898
Unique NameCN188898
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length768
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4626 contig Csv1_Contig4626:192..959. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188898 vs. ExPASy Swiss-Prot
Match: RHA1_ARATH (Ras-related protein RHA1 OS=Arabidopsis thaliana GN=RHA1 PE=1 SV=1)

HSP 1 Score: 338.191 bits (866), Expect = 3.023e-92
Identity = 170/189 (89.95%), Postives = 178/189 (94.18%), Query Frame = -1
Query:  202 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQPAPNPSGMVLMDRPGERTASASCCS 768
            KLVLLGDVGAGKSSLVLRFVK QF+EFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIV+DITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKV+AEEA+ YAQEN LFFMETSAKTATNV DIFYEIAKRLPRVQPA NP+GMVL + PG    S+SCC+
Sbjct:   12 KLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVSAEEAEIYAQENSLFFMETSAKTATNVKDIFYEIAKRLPRVQPAENPTGMVLPNGPGATAVSSSCCA 200          
BLAST of CN188898 vs. ExPASy Swiss-Prot
Match: RHN1_NICPL (Ras-related protein RHN1 OS=Nicotiana plumbaginifolia GN=RHN1 PE=2 SV=1)

HSP 1 Score: 321.627 bits (823), Expect = 2.928e-87
Identity = 161/189 (85.19%), Postives = 172/189 (91.01%), Query Frame = -1
Query:  202 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQPAPNPSGMVLMDRPGERTASASCCS 768
            KLVLLGD+GAGKSSLV+RFVKGQF+EFQESTIGAAFFS TLAVN+ATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDIT+  SF RAKKWVQELQ QGNPNMVMALAGNKADL D RKVTAEEA+ YA+ENGLFFMETSAKTA NVN IFYEIAKRLPR QPA NP+GMVL+DR  E T + SCC+
Sbjct:   12 KLVLLGDMGAGKSSLVIRFVKGQFLEFQESTIGAAFFSSTLAVNNATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITSSDSFARAKKWVQELQKQGNPNMVMALAGNKADLEDRRKVTAEEARLYAEENGLFFMETSAKTAVNVNAIFYEIAKRLPRAQPAQNPAGMVLVDRAAEGTRATSCCT 200          
BLAST of CN188898 vs. ExPASy Swiss-Prot
Match: RAB5_TOBAC (Ras-related protein Rab5 OS=Nicotiana tabacum GN=RAB5 PE=2 SV=1)

HSP 1 Score: 321.627 bits (823), Expect = 2.928e-87
Identity = 159/189 (84.13%), Postives = 174/189 (92.06%), Query Frame = -1
Query:  202 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQPAPNPSGMVLMDRPGERTASASCCS 768
            KLVLLGD+GAGKSSLV+RFVKGQF+EFQESTIGAAFFS T++VN+ATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDIT+  S  RAKKWVQELQ QGNPNMVMALAGNKADL D RKVTAEEA+ YA+ENGLFFMETSAKTATNVNDIFYEIAKRLPR QPA NP+GMVL D+P + + +ASCC+
Sbjct:   12 KLVLLGDMGAGKSSLVIRFVKGQFLEFQESTIGAAFFSSTVSVNNATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITSTESLARAKKWVQELQKQGNPNMVMALAGNKADLEDKRKVTAEEARLYAEENGLFFMETSAKTATNVNDIFYEIAKRLPRAQPAQNPAGMVLEDKPAQGSQAASCCT 200          
BLAST of CN188898 vs. ExPASy Swiss-Prot
Match: RAB5A_MOUSE (Ras-related protein Rab-5A OS=Mus musculus GN=Rab5a PE=1 SV=1)

HSP 1 Score: 245.358 bits (625), Expect = 2.667e-64
Identity = 127/194 (65.46%), Postives = 150/194 (77.32%), Query Frame = -1
Query:  202 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQPAPNPSGMVLMDRPGERT-----ASASCCS 768
            KLVLLG+   GKSSLVLRFVKGQF EFQESTIGAAF +QT+ ++D TVKFEIWDTAGQERYHSLAPMYYRGA AAI+VYDITN+ SF RAK WV+ELQ Q +PN+V+AL+GNKADL + R V  +EAQ+YA +N L FMETSAKT+ NVN+IF  IAK+LP+ +P  NP       R  + T     A + CCS
Sbjct:   22 KLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKNEP-QNPGANSARGRGVDLTEPAQPARSQCCS 214          
BLAST of CN188898 vs. ExPASy Swiss-Prot
Match: RAB5C_CANFA (Ras-related protein Rab-5C OS=Canis familiaris GN=RAB5C PE=2 SV=1)

HSP 1 Score: 244.202 bits (622), Expect = 5.941e-64
Identity = 130/193 (67.36%), Postives = 149/193 (77.20%), Query Frame = -1
Query:  202 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQP---APNPSGMVLMDRPGERTASAS-CCS 768
            KLVLLG+   GKSSLVLRFVKGQF E+QESTIGAAF +QT+ ++D TVKFEIWDTAGQERYHSLAPMYYRGA AAI+VYDITN  +F RAK WV+ELQ Q +PN+V+ALAGNKADL   R V  +EAQAYA +N L FMETSAKTA NVN+IF  IAK+LP+ +P   A  PS    +D      AS S CCS
Sbjct:   23 KLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEPQNAAGAPSRNRGVDLQENSPASRSQCCS 215          
BLAST of CN188898 vs. ExPASy Swiss-Prot
Match: RAB5A_MACFA (Ras-related protein Rab-5A OS=Macaca fascicularis GN=RAB5A PE=2 SV=1)

HSP 1 Score: 244.202 bits (622), Expect = 5.941e-64
Identity = 128/195 (65.64%), Postives = 151/195 (77.44%), Query Frame = -1
Query:  202 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQPAPNPSGM------VLMDRPGERTASASCCS 768
            KLVLLG+   GKSSLVLRFVKGQF EFQESTIGAAF +QT+ ++D TVKFEIWDTAGQERYHSLAPMYYRGA AAI+VYDITN+ SF RAK WV+ELQ Q +PN+V+AL+GNKADL + R V  +EAQ+YA +N L FMETSAKT+ NVN+IF  IAK+LP+ +P  NP         V +  P + T S  CCS
Sbjct:   22 KLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKNEP-QNPGANSARGRGVDLTEPTQPTRS-QCCS 214          
BLAST of CN188898 vs. ExPASy Swiss-Prot
Match: RAB5A_CANFA (Ras-related protein Rab-5A OS=Canis familiaris GN=RAB5A PE=1 SV=1)

HSP 1 Score: 244.202 bits (622), Expect = 5.941e-64
Identity = 128/195 (65.64%), Postives = 151/195 (77.44%), Query Frame = -1
Query:  202 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQPAPNPSGM------VLMDRPGERTASASCCS 768
            KLVLLG+   GKSSLVLRFVKGQF EFQESTIGAAF +QT+ ++D TVKFEIWDTAGQERYHSLAPMYYRGA AAI+VYDITN+ SF RAK WV+ELQ Q +PN+V+AL+GNKADL + R V  +EAQ+YA +N L FMETSAKT+ NVN+IF  IAK+LP+ +P  NP         V +  P + T S  CCS
Sbjct:   22 KLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKNEP-QNPGANSARGRGVDLTEPTQPTRS-QCCS 214          
BLAST of CN188898 vs. ExPASy Swiss-Prot
Match: RAB5A_BOVIN (Ras-related protein Rab-5A OS=Bos taurus GN=RAB5A PE=2 SV=1)

HSP 1 Score: 244.202 bits (622), Expect = 5.941e-64
Identity = 128/195 (65.64%), Postives = 151/195 (77.44%), Query Frame = -1
Query:  202 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQPAPNPSGM------VLMDRPGERTASASCCS 768
            KLVLLG+   GKSSLVLRFVKGQF EFQESTIGAAF +QT+ ++D TVKFEIWDTAGQERYHSLAPMYYRGA AAI+VYDITN+ SF RAK WV+ELQ Q +PN+V+AL+GNKADL + R V  +EAQ+YA +N L FMETSAKT+ NVN+IF  IAK+LP+ +P  NP         V +  P + T S  CCS
Sbjct:   22 KLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKNEP-QNPGANSTRGRGVDLTEPTQPTRS-QCCS 214          
BLAST of CN188898 vs. ExPASy Swiss-Prot
Match: RAB5C_BOVIN (Ras-related protein Rab-5C OS=Bos taurus GN=RAB5C PE=2 SV=1)

HSP 1 Score: 243.817 bits (621), Expect = 7.759e-64
Identity = 129/193 (66.84%), Postives = 149/193 (77.20%), Query Frame = -1
Query:  202 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQP---APNPSGMVLMDRPGERTASAS-CCS 768
            KLVLLG+   GKSSLVLRFVKGQF E+QESTIGAAF +QT+ ++D TVKFEIWDTAGQERYHSLAPMYYRGA AAI+VYDITN  +F RAK WV+ELQ Q +PN+V+ALAGNKADL   R V  +EAQAYA++N L FMETSAKTA NVN+IF  IAK+LP+ +P   A  P     +D      AS S CCS
Sbjct:   23 KLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASKRAVEFQEAQAYAEDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEPQNAAGAPGRNRGVDLQENNPASRSQCCS 215          
BLAST of CN188898 vs. ExPASy Swiss-Prot
Match: RAB5A_DICDI (Ras-related protein Rab-5A OS=Dictyostelium discoideum GN=rab5A PE=3 SV=1)

HSP 1 Score: 243.817 bits (621), Expect = 7.759e-64
Identity = 120/173 (69.36%), Postives = 142/173 (82.08%), Query Frame = -1
Query:  250 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQPAPNPSGMV 768
            KLVLLG+   GKSSLVLRFV+G F+++QESTIGAAF +QT+ +ND TVKFEIWDTAGQERYH+LAPMYYRGA AAI+VYDI ++ SFERA KWV+ELQ QG+PN+V+ALAGNK DL   RKV   EAQ YA+ENGL FMETSAKT+ NVN++F EIAK+LP+       SG V
Sbjct:   11 KLVLLGEAAVGKSSLVLRFVRGHFLDYQESTIGAAFLAQTVCLNDTTVKFEIWDTAGQERYHTLAPMYYRGAQAAIVVYDIRSEDSFERAIKWVKELQRQGSPNIVIALAGNKLDLAAKRKVETAEAQQYAEENGLLFMETSAKTSQNVNELFVEIAKKLPKTPTTRPGSGRV 183          
The following BLAST results are available for this feature:
BLAST of CN188898 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RHA1_ARATH3.023e-9289.95Ras-related protein RHA1 OS=Arabidopsis thaliana G... [more]
RHN1_NICPL2.928e-8785.19Ras-related protein RHN1 OS=Nicotiana plumbaginifo... [more]
RAB5_TOBAC2.928e-8784.13Ras-related protein Rab5 OS=Nicotiana tabacum GN=R... [more]
RAB5A_MOUSE2.667e-6465.46Ras-related protein Rab-5A OS=Mus musculus GN=Rab5... [more]
RAB5C_CANFA5.941e-6467.36Ras-related protein Rab-5C OS=Canis familiaris GN=... [more]
RAB5A_MACFA5.941e-6465.64Ras-related protein Rab-5A OS=Macaca fascicularis ... [more]
RAB5A_CANFA5.941e-6465.64Ras-related protein Rab-5A OS=Canis familiaris GN=... [more]
RAB5A_BOVIN5.941e-6465.64Ras-related protein Rab-5A OS=Bos taurus GN=RAB5A ... [more]
RAB5C_BOVIN7.759e-6466.84Ras-related protein Rab-5C OS=Bos taurus GN=RAB5C ... [more]
RAB5A_DICDI7.759e-6469.36Ras-related protein Rab-5A OS=Dictyostelium discoi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006P24_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006P24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188898 ID=CN188898; Name=CN188898; organism=Citrus sinensis; type=EST; length=768bp
TTTTTTGATTACCTTGGAAGCCACTCTCCAATTCAATTTACCAGTTCATA
CCAATGCAAGATGCATGTACAGTTCTGATATCTCAACAAATAATACACGA
TAGCAAACTTGGAAGGATAAGACTCAAAAAGTTCCTAGTAAAGCTAGAGG
AGCCATTTAGAAGATACAAACAGACAGTGCTCATCACCACCCAAGTATCT
AAGAGCAACATGATGCACTCGCTGTCCTTTCCCCAGGTCTATCCATAAGA
ACCATTCCTGATGGATTTGGTGCTGGCTGCACTCGAGGCAATCTCTTTGC
TATTTCATAGAAAATGTCATTCACATTGGTTGCTGTTTTTGCAGAGGTTT
CCATAAAGAATAGGCCATTTTCCTGGGCATAAGCTTGTGCTTCCTCTGCC
GTGACCTTCCTCGCATCCAACAAGTCAGCTTTGTTACCAGCAAGTGCCAT
AACCATATTTGGATTGCCTTGTGCCTGAAGTTCTTGGACCCATTTCTTAG
CACGCTCAAATGAGGCTTGATTTGTTATATCGTACACAATAATTGCTGCG
GCAGCTCCTCTATAGTACATTGGAGCCAAGCTATGGTATCTCTCTTGTCC
TGCTGTATCCCAAATCTCAAATTTTACAGTAGCATCATTTACAGCTAATG
TTTGTGAGAAAAAGGCAGCTCCAATGGTTGATTCCTGAAACTCAATGAAT
TGGCCTTTAACAAAGCGCAGTACAAGACTAGACTTTCCAGCTCCAACATC
TCCCAGCAGCACCAATTT
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