CN188896

Overview
NameCN188896
Unique NameCN188896
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length761
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2690 contig Csv1_Contig2690:1..760. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CN188896 vs. ExPASy Swiss-Prot
Match: POP5_ARATH (Probable ribonuclease P/MRP protein subunit POP5 OS=Arabidopsis thaliana GN=EMB1687 PE=2 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 2.372e-49
Identity = 98/152 (64.47%), Postives = 124/152 (81.58%), Query Frame = 2 
Query:  254 MVGFKNRYMVVEVFLDPNKELPVDD-PVILTQFNVSKAIRDSILVNFGECGLASSLGSFQVKYVNPITKLCIIRASREDCQKVWSAMTMVRSIGNCLVLFNVLDLSGSIRACKNAALKCEEVKFEHYKLAVGARLSADVTQHMENCLEKIKI 706
            MVGFKNRYM++EVFLDP+K+L  +  P+ILTQFN+SKAI+DSILVNFGECGL SSLGSFQVKYVNPITKLCI+R+SRE+ ++VW A+T+V+SIGNC V+ N+LD+SG IRAC++ ALKC++ KFE         LS +  + M   LEKIK+
Sbjct:    1 MVGFKNRYMLMEVFLDPDKDLLGEGTPIILTQFNLSKAIKDSILVNFGECGLGSSLGSFQVKYVNPITKLCIVRSSREEHRQVWLAITLVKSIGNCPVILNLLDISGCIRACRDTALKCDKEKFEQ----CSKSLSEEEIRQMNTSLEKIKL 148
[Close]
BLAST of CN188896 vs. ExPASy Swiss-Prot
Match: POP5_SCHPO (Ribonucleases P/MRP protein subunit POP5 OS=Schizosaccharomyces pombe GN=SPCC830.09c PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.029e-12
Identity = 43/133 (32.33%), Postives = 72/133 (54.14%), Query Frame = 2 
Query:  254 MVGFKNRYMVVEVFLDPNKELPVDDPVI-----LTQFNVSKAIRDSILVNFGECGLASSLGSFQVKYVNPITKLCIIRASREDCQKVWSAMTMVRSIGNCLVLFNVLDLSGSIRACKNAALKCEEVKFEHYKL 637
            MV FK+RY++ EV     KE   D P I     +T  ++SK IR  +  NFG+ G+     S  VKY +P T   I+R SR+  +  W+A+ ++R +    V+  V+ +SG+I+  + AA++  + +  +  L
Sbjct:    1 MVRFKSRYLLFEVLYPEAKEF-FDYPTIPSDSSITTSSLSKIIRTMVAENFGDVGIGKVASSLTVKYFSPNTSTGILRVSRQHFRLAWAALVLIRELYGKPVIIRVVRVSGTIKKAELAAIERNKSEIHNISL 132
The following BLAST results are available for this feature:
BLAST of CN188896 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
POP5_ARATH2.372e-4964.47Probable ribonuclease P/MRP protein subunit POP5 O... [more]
POP5_SCHPO3.029e-1232.33Ribonucleases P/MRP protein subunit POP5 OS=Schizo... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0006P22_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006P22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188896 ID=CN188896; Name=CN188896; organism=Citrus sinensis; type=EST; length=761bp
CGTGCCTGACGCCGACAGCCACACCCTCAGTCCTCACTCGCAGCCATCCC
CTCCGCCGATCTTCGCAAGCCCAGCACGCTGCACCACGAGTCGCGAGCCC
GGCACCCAGCAGGCAGCCAGCTAGTCACGGGAGTCGCGAGCACCAATACG
CGTTGAACCTAGCACCAGCAGCGGCTGCGCACGGATGCCAGCAGCAGCGA
ACCCACTCTGCCTTGAACACACCATGCCCACGTGATCTTTGAGATAAAGG
ATCATGGTAGGATTTAAAAATAGGTATATGGTAGTGGAGGTATTTTTGGA
CCCAAATAAAGAGCTTCCCGTGGATGATCCTGTTATACTTACCCAATTTA
ATGTGTCAAAAGCAATTCGAGACAGCATTCTTGTAAACTTCGGCGAGTGT
GGTCTAGCTTCTTCGCTTGGATCATTCCAAGTCAAGTATGTGAATCCCAT
CACCAAGCTATGTATCATCAGAGCCTCAAGGGAGGATTGTCAGAAGGTTT
GGTCTGCAATGACCATGGTTAGAAGCATAGGAAATTGCCTGGTTCTATTT
AACGTACTGGACCTAAGTGGGAGCATCAGGGCCTGTAAGAATGCTGCATT
GAAGTGTGAGGAGGTGAAATTTGAACATTATAAGCTTGCCGTTGGAGCAC
GTCTCTCAGCCGATGTTACTCAACACATGGAAAACTGTCTGGAGAAGATC
AAAATTTTTGGAACACTGAAAATATCTTATCCTTGTAAGTGGTTAAGTAG
TAGATTTTCAT
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