CN182123

Overview
NameCN182123
Unique NameCN182123
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length658
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN182123_ssr2 microsatellite CN182123_ssr2:2..17. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig9517 contig Csv1_Contig9517:25..682. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN182123 vs. ExPASy Swiss-Prot
Match: FPPS1_LUPAL (Farnesyl pyrophosphate synthetase 1 OS=Lupinus albus GN=FPS1 PE=2 SV=1)

HSP 1 Score: 332.413 bits (851), Expect = 1.243e-90
Identity = 158/184 (85.87%), Postives = 168/184 (91.30%), Query Frame = 2
Query:  107 MSDLKSRFIEVYGVLKQELLNDPAFEFDHDSRQWVDRMLDYNVPGGKLNRGLSVVDSYRLLKEGKELTDDEFFLSSALGWCIEWLQAYFLVLDDIMDGSHTRRGQPCWFRVPKVGMIAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEFQTASGQMIDLITTIEAEKDLSKYSLPLHR 658
            M+DL+S F+ VY VLK ELL+DPAFEF  DSRQW+DRMLDYNVPGGKLNRGLSV+DSYRLLK+G EL DDE FL+SALGWCIEWLQAYFLVLDDIMD SHTRRGQPCWFRVPKVGMIAANDGVLLRNHI RILK HFR KPYY DLLDLFNEVEFQTASGQMIDLITT+E EKDLSKY+L LHR
Sbjct:    1 MADLRSTFLNVYSVLKSELLHDPAFEFSPDSRQWLDRMLDYNVPGGKLNRGLSVIDSYRLLKDGHELNDDEIFLASALGWCIEWLQAYFLVLDDIMDNSHTRRGQPCWFRVPKVGMIAANDGVLLRNHIPRILKKHFRGKPYYADLLDLFNEVEFQTASGQMIDLITTLEGEKDLSKYTLSLHR 184          
BLAST of CN182123 vs. ExPASy Swiss-Prot
Match: FPPS_HELAN (Farnesyl pyrophosphate synthetase OS=Helianthus annuus GN=FPS1 PE=2 SV=1)

HSP 1 Score: 328.946 bits (842), Expect = 1.375e-89
Identity = 156/183 (85.25%), Postives = 169/183 (92.35%), Query Frame = 2
Query:  110 SDLKSRFIEVYGVLKQELLNDPAFEFDHDSRQWVDRMLDYNVPGGKLNRGLSVVDSYRLLKEGKELTDDEFFLSSALGWCIEWLQAYFLVLDDIMDGSHTRRGQPCWFRVPKVGMIAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEFQTASGQMIDLITTIEAEKDLSKYSLPLHR 658
            SDLKS+F+ VY  LK ELLNDPAFEF HDSRQW+D+MLDYNVPGGKLNRGLSVVDSY+LLK G ELTDDE FL+SALGWCIEWLQAYFLVLDDIMDGSHTRRGQPCWFR+PKVGMIAANDG++LRNH+ RILK HFR KPYYVDL+DLFNEVEFQTASGQMIDLITT+  EKDLSKYSL +HR
Sbjct:    3 SDLKSKFLHVYQTLKSELLNDPAFEFHHDSRQWIDKMLDYNVPGGKLNRGLSVVDSYQLLK-GAELTDDEIFLASALGWCIEWLQAYFLVLDDIMDGSHTRRGQPCWFRLPKVGMIAANDGLILRNHVPRILKKHFRGKPYYVDLVDLFNEVEFQTASGQMIDLITTLVGEKDLSKYSLSIHR 184          
BLAST of CN182123 vs. ExPASy Swiss-Prot
Match: FPPS2_LUPAL (Farnesyl pyrophosphate synthetase 2 OS=Lupinus albus GN=FPS2 PE=2 SV=1)

HSP 1 Score: 324.324 bits (830), Expect = 3.386e-88
Identity = 153/184 (83.15%), Postives = 166/184 (90.22%), Query Frame = 2
Query:  107 MSDLKSRFIEVYGVLKQELLNDPAFEFDHDSRQWVDRMLDYNVPGGKLNRGLSVVDSYRLLKEGKELTDDEFFLSSALGWCIEWLQAYFLVLDDIMDGSHTRRGQPCWFRVPKVGMIAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEFQTASGQMIDLITTIEAEKDLSKYSLPLHR 658
            M+D KS F+ VY +LK ELL DPAFEF  DSRQWV+RMLDYNVPGGKLNRGLSV+DSY+LLK+G+EL D+E FL+SALGWCIEWLQAYFLVLDDIMD SHTRRG PCWFRVPKVGMIA NDGV+LRNHI RILK HFR KPYYVDLLDLFNEVEFQTASGQMIDLITT+E EKDLSKY+L LHR
Sbjct:    1 MADPKSSFLNVYSILKSELLQDPAFEFSTDSRQWVERMLDYNVPGGKLNRGLSVIDSYKLLKDGQELNDEEIFLASALGWCIEWLQAYFLVLDDIMDNSHTRRGHPCWFRVPKVGMIAPNDGVVLRNHIPRILKKHFRGKPYYVDLLDLFNEVEFQTASGQMIDLITTLEGEKDLSKYTLSLHR 184          
BLAST of CN182123 vs. ExPASy Swiss-Prot
Match: FPPS_ARTAN (Farnesyl pyrophosphate synthetase OS=Artemisia annua GN=FPS1 PE=2 SV=1)

HSP 1 Score: 323.168 bits (827), Expect = 7.544e-88
Identity = 153/183 (83.61%), Postives = 169/183 (92.35%), Query Frame = 2
Query:  110 SDLKSRFIEVYGVLKQELLNDPAFEFDHDSRQWVDRMLDYNVPGGKLNRGLSVVDSYRLLKEGKELTDDEFFLSSALGWCIEWLQAYFLVLDDIMDGSHTRRGQPCWFRVPKVGMIAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEFQTASGQMIDLITTIEAEKDLSKYSLPLHR 658
            +DLKS+F++VY  LK EL+NDPAFEFD DSRQW+++MLDYNVPGGKLNRGLSVVDSY+LLK G EL+DDE FLSSALGWCIEWLQAYFLVLDDIMD SHTRRGQPCWFR+PKVGMIAANDG+LLRNH+ RILK HFR KPYYVDL+DLFNEVEFQTASGQMIDLITT+  EKDLSKYSL +HR
Sbjct:    4 TDLKSKFLKVYDTLKSELINDPAFEFDDDSRQWIEKMLDYNVPGGKLNRGLSVVDSYQLLKGG-ELSDDEIFLSSALGWCIEWLQAYFLVLDDIMDESHTRRGQPCWFRLPKVGMIAANDGILLRNHVPRILKKHFRGKPYYVDLVDLFNEVEFQTASGQMIDLITTLVGEKDLSKYSLSIHR 185          
BLAST of CN182123 vs. ExPASy Swiss-Prot
Match: FPPS1_PARAR (Farnesyl pyrophosphate synthetase 1 OS=Parthenium argentatum GN=FPS1 PE=2 SV=1)

HSP 1 Score: 320.857 bits (821), Expect = 3.744e-87
Identity = 152/183 (83.06%), Postives = 169/183 (92.35%), Query Frame = 2
Query:  110 SDLKSRFIEVYGVLKQELLNDPAFEFDHDSRQWVDRMLDYNVPGGKLNRGLSVVDSYRLLKEGKELTDDEFFLSSALGWCIEWLQAYFLVLDDIMDGSHTRRGQPCWFRVPKVGMIAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEFQTASGQMIDLITTIEAEKDLSKYSLPLHR 658
            SDLKSRF++VY  LK EL+NDPAFEFD DSRQWV++MLDYNVPGGKLNRGLSV+DSY+LLK G ELTD+E FL++ALGWCIEWLQAYFLVLDDIMD SHTRRGQPCWFR+PKVGMIAANDG++LRN++ RILK HFR KPYYVDLLDLFNEVEFQTASGQMIDLITT+  EKDLSKYSL +HR
Sbjct:    3 SDLKSRFLQVYDTLKSELINDPAFEFDDDSRQWVEKMLDYNVPGGKLNRGLSVIDSYQLLKGG-ELTDNEIFLAAALGWCIEWLQAYFLVLDDIMDESHTRRGQPCWFRLPKVGMIAANDGIILRNNVPRILKKHFRGKPYYVDLLDLFNEVEFQTASGQMIDLITTLVGEKDLSKYSLSIHR 184          
BLAST of CN182123 vs. ExPASy Swiss-Prot
Match: FPPS2_PARAR (Farnesyl pyrophosphate synthetase 2 OS=Parthenium argentatum GN=FPS2 PE=2 SV=1)

HSP 1 Score: 317.775 bits (813), Expect = 3.169e-86
Identity = 147/183 (80.33%), Postives = 168/183 (91.80%), Query Frame = 2
Query:  110 SDLKSRFIEVYGVLKQELLNDPAFEFDHDSRQWVDRMLDYNVPGGKLNRGLSVVDSYRLLKEGKELTDDEFFLSSALGWCIEWLQAYFLVLDDIMDGSHTRRGQPCWFRVPKVGMIAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEFQTASGQMIDLITTIEAEKDLSKYSLPLHR 658
            +D++S+F++VY  LK EL+NDPAFEFD DSRQW+++MLDYNVPGGKLNRGLSV+DSY+LLK GK LTDDE F +SALGWC+EWLQAYFLVLDDIMD SHTRRGQPCWFR+PKVGMIAANDG++LRNH+ RILK HFR KPYYVDL+DLFNEVEFQTASGQMIDLITT+  EKDLSKYSL +HR
Sbjct:    3 TDIRSKFLQVYDTLKSELINDPAFEFDDDSRQWIEKMLDYNVPGGKLNRGLSVIDSYQLLKGGK-LTDDEIFHASALGWCVEWLQAYFLVLDDIMDESHTRRGQPCWFRLPKVGMIAANDGIILRNHVPRILKKHFRGKPYYVDLVDLFNEVEFQTASGQMIDLITTLVGEKDLSKYSLSIHR 184          
BLAST of CN182123 vs. ExPASy Swiss-Prot
Match: FPPS2_ARATH (Farnesyl pyrophosphate synthetase 2 OS=Arabidopsis thaliana GN=FPS2 PE=2 SV=1)

HSP 1 Score: 310.457 bits (794), Expect = 5.060e-84
Identity = 146/184 (79.35%), Postives = 164/184 (89.13%), Query Frame = 2
Query:  107 MSDLKSRFIEVYGVLKQELLNDPAFEFDHDSRQWVDRMLDYNVPGGKLNRGLSVVDSYRLLKEGKELTDDEFFLSSALGWCIEWLQAYFLVLDDIMDGSHTRRGQPCWFRVPKVGMIAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEFQTASGQMIDLITTIEAEKDLSKYSLPLHR 658
            M+DLKS F++VY VLK +LL DP+FEF H+SRQW++RMLDYNV GGKLNRGLSVVDSY+LLK+G++LT+ E FLS ALGWCIEWLQAYFLVLDDIMD S TRRGQPCWFR PKVGMIA NDG+LLRNHI RILK HFR+ PYYVDL+DLFNEVEFQTA GQMIDLITT + EKDLSKYSL +HR
Sbjct:    1 MADLKSTFLDVYSVLKSDLLQDPSFEFTHESRQWLERMLDYNVRGGKLNRGLSVVDSYKLLKQGQDLTEKETFLSCALGWCIEWLQAYFLVLDDIMDNSVTRRGQPCWFRKPKVGMIAINDGILLRNHIHRILKKHFREMPYYVDLVDLFNEVEFQTACGQMIDLITTFDGEKDLSKYSLQIHR 184          
BLAST of CN182123 vs. ExPASy Swiss-Prot
Match: FPPS1_ARATH (Farnesyl pyrophosphate synthetase 1, mitochondrial OS=Arabidopsis thaliana GN=FPS1 PE=2 SV=2)

HSP 1 Score: 306.22 bits (783), Expect = 9.543e-83
Identity = 144/183 (78.69%), Postives = 162/183 (88.52%), Query Frame = 2
Query:  110 SDLKSRFIEVYGVLKQELLNDPAFEFDHDSRQWVDRMLDYNVPGGKLNRGLSVVDSYRLLKEGKELTDDEFFLSSALGWCIEWLQAYFLVLDDIMDGSHTRRGQPCWFRVPKVGMIAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEFQTASGQMIDLITTIEAEKDLSKYSLPLHR 658
            +DLKS F+ VY VLK +LL+DP+FEF ++SR WVDRMLDYNV GGKLNRGLSVVDS++LLK+G +LT+ E FLS ALGWCIEWLQAYFLVLDDIMD S TRRGQPCWFRVP+VGM+A NDG+LLRNHI RILK HFRDKPYYVDL+DLFNEVE QTA GQMIDLITT E EKDL+KYSL +HR
Sbjct:   44 TDLKSTFLNVYSVLKSDLLHDPSFEFTNESRLWVDRMLDYNVRGGKLNRGLSVVDSFKLLKQGNDLTEQEVFLSCALGWCIEWLQAYFLVLDDIMDNSVTRRGQPCWFRVPQVGMVAINDGILLRNHIHRILKKHFRDKPYYVDLVDLFNEVELQTACGQMIDLITTFEGEKDLAKYSLSIHR 226          
BLAST of CN182123 vs. ExPASy Swiss-Prot
Match: FPPS_MAIZE (Farnesyl pyrophosphate synthetase OS=Zea mays GN=FPS PE=2 SV=1)

HSP 1 Score: 284.648 bits (727), Expect = 2.973e-76
Identity = 130/181 (71.82%), Postives = 155/181 (85.64%), Query Frame = 2
Query:  113 DLKSRFIEVYGVLKQELLNDPAFEFDHDSRQWVDRMLDYNVPGGKLNRGLSVVDSYRLLKEGKELTDDEFFLSSALGWCIEWLQAYFLVLDDIMDGSHTRRGQPCWFRVPKVGMIAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEFQTASGQMIDLITTIEAEKDLSKYSLPLH 655
            D ++ F  +Y  LK+ELL DPAFEF  +SRQW+DRM+DYNV GGK NRGLSVVDSY+LLK    L ++E FL+  LGWCIEWLQA+FLVLDDIMD SHTRRGQPCWFRVP+VG+IAANDG++LRNHISRIL+ HF+ KPYY DLLDLFNEVEF+TASGQ++DLITT E EKDL+KY++ +H
Sbjct:   11 DTRAAFARIYKTLKEELLTDPAFEFTEESRQWIDRMVDYNVLGGKCNRGLSVVDSYKLLKGADALGEEETFLACTLGWCIEWLQAFFLVLDDIMDDSHTRRGQPCWFRVPQVGLIAANDGIILRNHISRILRRHFKGKPYYADLLDLFNEVEFKTASGQLLDLITTHEGEKDLTKYNITVH 191          
BLAST of CN182123 vs. ExPASy Swiss-Prot
Match: CPPAS_TANCI (Chrysanthemyl diphosphate synthase, chloroplastic OS=Tanacetum cinerariifolium PE=1 SV=1)

HSP 1 Score: 280.411 bits (716), Expect = 5.608e-75
Identity = 131/183 (71.58%), Postives = 158/183 (86.34%), Query Frame = 2
Query:  110 SDLKSRFIEVYGVLKQELLNDPAFEFDHDSRQWVDRMLDYNVPGGKLNRGLSVVDSYRLLKEGKELTDDEFFLSSALGWCIEWLQAYFLVLDDIMDGSHTRRGQPCWFRVPKVGMIAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEFQTASGQMIDLITTIEAEKDLSKYSLPLHR 658
            S+L S+F++VY  LK EL++DP+FEFD DSRQWV+RM+DYNVPGGK+ RG SVVDSY+LLK G+ELT+DE FL+ ALGWC EWLQA+ LVLDDIMDGSHTRRGQPCWFR+P+VG++A NDGVLLRNH+ RILK +F+ KPYYV LLDLFNE EFQT SGQMID I  +  +KDLSKY++ L+R
Sbjct:   56 SNLDSQFMQVYETLKSELIHDPSFEFDDDSRQWVERMIDYNVPGGKMVRGYSVVDSYQLLK-GEELTEDEAFLACALGWCTEWLQAFILVLDDIMDGSHTRRGQPCWFRLPEVGVVAINDGVLLRNHVHRILKKYFQGKPYYVHLLDLFNETEFQTISGQMIDTICRLAGQKDLSKYTMTLNR 237          
The following BLAST results are available for this feature:
BLAST of CN182123 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
FPPS1_LUPAL1.243e-9085.87Farnesyl pyrophosphate synthetase 1 OS=Lupinus alb... [more]
FPPS_HELAN1.375e-8985.25Farnesyl pyrophosphate synthetase OS=Helianthus an... [more]
FPPS2_LUPAL3.386e-8883.15Farnesyl pyrophosphate synthetase 2 OS=Lupinus alb... [more]
FPPS_ARTAN7.544e-8883.61Farnesyl pyrophosphate synthetase OS=Artemisia ann... [more]
FPPS1_PARAR3.744e-8783.06Farnesyl pyrophosphate synthetase 1 OS=Parthenium ... [more]
FPPS2_PARAR3.169e-8680.33Farnesyl pyrophosphate synthetase 2 OS=Parthenium ... [more]
FPPS2_ARATH5.060e-8479.35Farnesyl pyrophosphate synthetase 2 OS=Arabidopsis... [more]
FPPS1_ARATH9.543e-8378.69Farnesyl pyrophosphate synthetase 1, mitochondrial... [more]
FPPS_MAIZE2.973e-7671.82Farnesyl pyrophosphate synthetase OS=Zea mays GN=F... [more]
CPPAS_TANCI5.608e-7571.58Chrysanthemyl diphosphate synthase, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001P18_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001P18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182123 ID=CN182123; Name=CN182123; organism=Citrus sinensis; type=EST; length=658bp
GCTCTCTCTCTCTCTCTTCTCTGTATTTTGCTTTCTTTCATTCTGTTTCT
CTCTTTTTTTTCTTACTTTTTTTTTGGTGGTGGGTCGCAAAAGCGGAAGG
TAAAAAATGAGTGATCTGAAGTCAAGATTCATTGAGGTGTATGGCGTTTT
GAAACAAGAGCTGCTGAATGATCCTGCATTTGAGTTCGATCACGATTCTC
GCCAATGGGTTGATCGTATGCTGGATTACAATGTACCTGGAGGAAAGCTG
AACCGAGGGCTATCTGTTGTTGACAGCTACAGGTTACTGAAAGAAGGAAA
AGAACTAACAGATGATGAATTCTTTCTCTCATCTGCACTAGGCTGGTGCA
TCGAATGGCTTCAAGCATATTTTCTTGTTCTTGATGATATCATGGATGGC
TCTCATACACGCCGTGGTCAACCTTGCTGGTTCAGAGTCCCCAAGGTTGG
TATGATTGCTGCAAATGATGGTGTCTTACTACGCAACCATATCTCCAGAA
TTCTCAAGAATCATTTTAGAGACAAGCCTTATTACGTGGACCTGTTGGAT
TTATTTAATGAGGTGGAATTTCAAACAGCTTCAGGACAAATGATAGACTT
AATTACCACAATCGAAGCAGAGAAAGATCTATCGAAGTACTCATTGCCAC
TTCATCGT
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