CN188892

Overview
NameCN188892
Unique NameCN188892
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length773
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10458 contig Csv1_Contig10458:1019..1791. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188892 vs. ExPASy Swiss-Prot
Match: SCL8_ARATH (Scarecrow-like protein 8 OS=Arabidopsis thaliana GN=SCL8 PE=2 SV=1)

HSP 1 Score: 288.886 bits (738), Expect = 2.094e-77
Identity = 156/267 (58.43%), Postives = 191/267 (71.54%), Query Frame = 2
Query:    8 QATNSKGNSEQRLMEHMCSALKSRVNPHENPPPVAELFGKEHAESTQLLYDFSPCFSLGFMAANLAILEATMEQTTGNTIGSNKIHVIDFDIGQGGQYMNLFHALSARLNGKPA-----IVKVTAVADGT-------ASEEKLKAVRDKLSQVAERVGVCLRFNVAICLKFDDLSRDSLGCEPDETLAVNFAFKLFRMPDESVSTENPRDELLRRVKGLSPSVVTLVEQETNTNTAPFMARVNEACAYYGALFDSIESTVLRDHSDR 772
            Q  N + NSE++L++ M +AL+SR+       PV EL+GKEH  STQLLY+ SPCF LGF AANLAIL+A      G  I     HVIDFDIG+GGQY+NL   LS R NGK       +VK+TAVA+           EE+LKAV D LSQ+ +R+G+ + FNV   L+  DL+R+SLGC+PDETLAVN AFKL+R+PDESV TENPRDELLRRVKGL P VVTLVEQE N+NTAPF+ RV+E+CA YGAL +S+ESTV   +SDR
Sbjct:  293 QTPNLERNSEEKLVDFMVAALRSRI-----ASPVTELYGKEHLISTQLLYELSPCFKLGFEAANLAILDAADNNDGGMMIP----HVIDFDIGEGGQYVNLLRTLSTRRNGKSQSQNSPVVKITAVANNVYGCLVDDGGEERLKAVGDLLSQLGDRLGISVSFNVVTSLRLGDLNRESLGCDPDETLAVNLAFKLYRVPDESVCTENPRDELLRRVKGLKPRVVTLVEQEMNSNTAPFLGRVSESCACYGALLESVESTVPSTNSDR 550          
BLAST of CN188892 vs. ExPASy Swiss-Prot
Match: SCL1_ARATH (Scarecrow-like protein 1 OS=Arabidopsis thaliana GN=SCL1 PE=2 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 3.987e-44
Identity = 107/268 (39.93%), Postives = 154/268 (57.46%), Query Frame = 2
Query:    8 QATNSKGNSEQRLMEHMCSALKSRVNPH----------ENPPPVAELFGKEHAESTQLLYDFSPCFSLGFMAANLAILEATMEQTTGNTIGSNKIHVIDFDIGQGGQYMNLFHALSARLNGKPAIVKVTAVADGTASEEKLKAVRD---KLSQVAERVGVCLRFNVAICLKFDDLSRDSLGCEPDETLAVNFAFKLFRMPDESVSTENPRDELLRRVKGLSPSVVTLVEQETNTNTAPFMARVNEACAYYGALFDSIESTVLRDHSDR 772
            Q  + +G+  QR+  +M   L +R+             + PP        E   + Q+L++  PCF  GF+AAN AILEA          G  ++H+IDFDI QG QYM L  ++ A L GK   +++T + D  + +  +  +R    +L Q+AE  GV  +F  A+  K   +S  +LGC+P ETL VNFAF+L  MPDESV+T N RDELL  VK L+P +VT+VEQ+ NTNT+PF  R  EA  YY A+F+S++ T+ R+  +R
Sbjct:  250 QIVSIQGDPSQRIAAYMVEGLAARMAASGKFIYRALKCKEPP------SDERLAAMQVLFEVCPCFKFGFLAANGAILEAIK--------GEEEVHIIDFDINQGNQYMTLIRSI-AELPGKRPRLRLTGIDDPESVQRSIGGLRIIGLRLEQLAEDNGVSFKFK-AMPSKTSIVSPSTLGCKPGETLIVNFAFQLHHMPDESVTTVNQRDELLHMVKSLNPKLVTVVEQDVNTNTSPFFPRFIEAYEYYSAVFESLDMTLPRESQER 501          
BLAST of CN188892 vs. ExPASy Swiss-Prot
Match: PAT1_ARATH (Scarecrow-like transcription factor PAT1 OS=Arabidopsis thaliana GN=PAT1 PE=2 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 6.800e-44
Identity = 103/227 (45.37%), Postives = 138/227 (60.79%), Query Frame = 2
Query:  101 PPVAELFGKEHAESTQLLYDFSPCFSLGFMAANLAILEATMEQTTGNTIGSNKIHVIDFDIGQGGQYMNLFHALSARLNGKPAIVKVTAVADGTASEEK---LKAVRDKLSQVAERVGVCLRFNVAICLKFDDLSRDSLGCEPDETLAVNFAFKLFRMPDESVSTENPRDELLRRVKGLSPSVVTLVEQETNTNTAPFMARVNEACAYYGALFDSIESTVLRDHSDR 772
            P   EL    H     +LY+  P F  G+M+AN AI EA  E+        N++H+IDF IGQG Q++ L  A +AR  G P I ++T + D T++  +   L  V ++L+++A++  V   FN ++ +   ++   +LG  P E LAVNFAF L  MPDESVSTEN RD LLR VK LSP VVTLVEQE+NTNTA F  R  E   YY A+F+SI+ T+ RDH  R
Sbjct:  188 PASTELLSYMH-----ILYEVCPYFKFGYMSANGAIAEAMKEE--------NRVHIIDFQIGQGSQWVTLIQAFAARPGGPPRI-RITGIDDMTSAYARGGGLSIVGNRLAKLAKQFNVPFEFN-SVSVSVSEVKPKNLGVRPGEALAVNFAFVLHHMPDESVSTENHRDRLLRMVKSLSPKVVTLVEQESNTNTAAFFPRFMETMNYYAAMFESIDVTLPRDHKQR 399          
BLAST of CN188892 vs. ExPASy Swiss-Prot
Match: SCL21_ARATH (Scarecrow-like protein 21 OS=Arabidopsis thaliana GN=SCL21 PE=1 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 8.602e-39
Identity = 92/208 (44.23%), Postives = 129/208 (62.02%), Query Frame = 2
Query:  149 LLYDFSPCFSLGFMAANLAILEATMEQTTGNTIGSNKIHVIDFDIGQGGQYMNLFHALSARLNGKPAIVKVTAVADGTASEEKLKAVRDKLSQVAERVGVCLRFNVAICLKFDDLSRDSLGCEPDETLAVNFAFKLFRMPDESVSTENPRDELLRRVKGLSPSVVTLVEQETNTNTAPFMARVNEACAYYGALFDSIESTVLRDHSDR 772
            +L++  P F  G+M+AN AI EA  ++         +IH+IDF IGQG Q++ L  A +AR  G P I ++T V DG+     L  V+ +L ++A++  V  RFN A+     ++  ++L     E L VNFA+ L  +PDESVS EN RD LLR VK LSP VVTLVEQE NTNT+PF+ R  E  +YY A+F+SI+  + R+H +R
Sbjct:  129 VLHEVCPYFKFGYMSANGAIAEAMKDE--------ERIHIIDFQIGQGSQWIALIQAFAARPGGAPNI-RITGVGDGSV----LVTVKKRLEKLAKKFDVPFRFN-AVSRPSCEVEVENLDVRDGEALGVNFAYMLHHLPDESVSMENHRDRLLRMVKSLSPKVVTLVEQECNTNTSPFLPRFLETLSYYTAMFESIDVMLPRNHKER 322          
BLAST of CN188892 vs. ExPASy Swiss-Prot
Match: SCL5_ARATH (Scarecrow-like protein 5 OS=Arabidopsis thaliana GN=SCL5 PE=2 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 5.576e-38
Identity = 105/263 (39.92%), Postives = 145/263 (55.13%), Query Frame = 2
Query:    8 QATNSKGNSEQRLMEHMCSALKSRVNPHENPPPVA----ELFGKEHAESTQLLYDFSPCFSLGFMAANLAILEATMEQTTGNTIGSNKIHVIDFDIGQGGQYMNLFHALSARLNGKPAIVKVTAVADGTASEEK---LKAVRDKLSQVAERVGVCLRFN-VAICLKFDDLSRDSLGCEPDETLAVNFAFKLFRMPDESVSTENPRDELLRRVKGLSPSVVTLVEQETNTNTAPFMARVNEACAYYGALFDSIESTVLRDHSDR 772
            Q  +  G   QRL  +M   L +R+    +    A    +  G E      +LY+  P F  G+ +AN AI EA   ++         +H+IDF I QGGQ+++L  AL AR  G P  V++T + D  +S  +   L+ V  +L ++AE  GV   F+  A+C    ++  + LG    E LAVNF   L  MPDESV+ EN RD LLR VK LSP+VVTLVEQE NTNTAPF+ R  E   +Y A+F+SI+  + RDH +R
Sbjct:  255 QMVSVSGEPVQRLGAYMLEGLVARLASSGSSIYKALRCKDPTGPELLTYMHILYEACPYFKFGYESANGAIAEAVKNESF--------VHIIDFQISQGGQWVSLIRALGARPGGPPN-VRITGIDDPRSSFARQGGLELVGQRLGKLAEMCGVPFEFHGAALCCT--EVEIEKLGVRNGEALAVNFPLVLHHMPDESVTVENHRDRLLRLVKHLSPNVVTLVEQEANTNTAPFLPRFVETMNHYLAVFESIDVKLARDHKER 506          
BLAST of CN188892 vs. ExPASy Swiss-Prot
Match: CIGR1_ORYSJ (Chitin-inducible gibberellin-responsive protein 1 OS=Oryza sativa subsp. japonica GN=CIGR1 PE=2 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.242e-37
Identity = 92/219 (42.01%), Postives = 125/219 (57.08%), Query Frame = 2
Query:  125 KEHAESTQLLYDFSPCFSLGFMAANLAILEATMEQTTGNTIGSNKIHVIDFDIGQGGQYMNLFHALSARLNGKPAIVKVTAVADGT---ASEEKLKAVRDKLSQVAERVGVCLRFNVAICLKFDDLSRDSLGCEPDETLAVNFAFKLFRMPDESVSTENPRDELLRRVKGLSPSVVTLVEQETNTNTAPFMARVNEACAYYGALFDSIESTVLRDHSDR 772
            KE     ++LY+  P F  G+MAAN AI EA   +        N IH+IDF I QG Q++ L  AL+AR  G P  V++T + D     A  E L  V   L  ++E   + L F   + +    ++++ L   P E L+VNF  +L   PDESV   NPRD LLR VKGLSP V TLVEQE++TNT PF+ R  E   YY A+F+SI++ + RD+ +R
Sbjct:  272 KELLSYMRILYNICPYFKFGYMAANGAIAEALRTE--------NNIHIIDFQIAQGTQWITLIQALAARPGGPPR-VRITGIDDPVSEYARGEGLDIVGKMLKSMSEEFKIPLEFT-PLSVYATQVTKEMLEIRPGEALSVNFTLQLHHTPDESVDVNNPRDGLLRMVKGLSPKVTTLVEQESHTNTTPFLMRFGETMEYYSAMFESIDANLPRDNKER 480          
BLAST of CN188892 vs. ExPASy Swiss-Prot
Match: SCL13_ARATH (Scarecrow-like protein 13 OS=Arabidopsis thaliana GN=SCL13 PE=2 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 4.720e-37
Identity = 98/256 (38.28%), Postives = 141/256 (55.08%), Query Frame = 2
Query:   26 GNSEQRLMEHMCSALKSRVNPHEN----PPPVAELFGKEHAESTQLLYDFSPCFSLGFMAANLAILEATMEQTTGNTIGSNKIHVIDFDIGQGGQYMNLFHALSARLNGKPAIVKVTAVADGTASEEK---LKAVRDKLSQVAERVGVCLRFNVAICLKFDDLSRDSLGCEPDETLAVNFAFKLFRMPDESVSTENPRDELLRRVKGLSPSVVTLVEQETNTNTAPFMARVNEACAYYGALFDSIESTVLRDHSDR 772
            G+  QRL  +M   L++R+    +         E  G+E      +LY+  P +   +  AN+ ILEA          G  ++H+IDF I QG QYM L   L A+  G P +++VT V D  ++  +   L  V ++L+ +A+  GV   F+ AI +    + R+ LG EP   + VNF + L  MPDESVS EN RD LL  +K LSP +VTLVEQE+NTNT+PF++R  E   YY A+F+SI++   RD   R
Sbjct:    6 GSPIQRLGTYMAEGLRARLEGSGSNIYKSLKCNEPTGRELMSYMSVLYEICPYWKFAYTTANVEILEAIA--------GETRVHIIDFQIAQGSQYMFLIQEL-AKHPGGPPLLRVTGVDDSQSTYARGGGLSLVGERLATLAQSCGVPFEFHDAI-MSGCKVQREHLGLEPGFAVVVNFPYVLHHMPDESVSVENHRDRLLHLIKSLSPKLVTLVEQESNTNTSPFLSRFVETLDYYTAMFESIDAARPRDDKQR 251          
BLAST of CN188892 vs. ExPASy Swiss-Prot
Match: CIGR2_ORYSJ (Chitin-inducible gibberellin-responsive protein 2 OS=Oryza sativa subsp. japonica GN=CIGR2 PE=2 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 6.165e-37
Identity = 92/210 (43.81%), Postives = 124/210 (59.05%), Query Frame = 2
Query:  152 LYDFSPCFSLGFMAANLAILEATMEQTTGNTIGSNKIHVIDFDIGQGGQYMNLFHALSARLNGKPAIVKVTAVADGTASEEK---LKAVRDKLSQVAERVGVCLRFNVAICLKFDDLSRDSLGCEPDETLAVNFAFKLFRMPDESVSTENPRDELLRRVKGLSPSVVTLVEQETNTNTAPFMARVNEACAYYGALFDSIESTVLRDHSDR 772
            LY+  P F  G+M+AN AI EA          G ++IH+IDF I QG Q+++L  AL+AR  G P  V++T + D  ++  +   L+ V  +LS +A    V   F+  + +    +    LG  P E LAVNF  +L  +PDESVST N RD LLR VK LSP V+TLVE E+NTNTAPF  R  E   YY A+F+SI+ T+ RD  +R
Sbjct:  254 LYEACPYFKFGYMSANGAIAEAVK--------GEDRIHIIDFHISQGAQWISLLQALAARPGGPPT-VRITGIDDSVSAYARGGGLELVGRRLSHIASLCKVPFEFH-PLAISGSKVEAAHLGVIPGEALAVNFTLELHHIPDESVSTANHRDRLLRMVKSLSPKVLTLVEMESNTNTAPFPQRFAETLDYYTAIFESIDLTLPRDDRER 453          
BLAST of CN188892 vs. ExPASy Swiss-Prot
Match: SCL4_ARATH (Scarecrow-like protein 4 OS=Arabidopsis thaliana GN=SCL4 PE=1 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 9.865e-27
Identity = 84/258 (32.56%), Postives = 131/258 (50.78%), Query Frame = 2
Query:    8 QATNSKGNSEQRLMEHMCSALKSRVNPHENPPPVAELFGKEHAESTQLLYDFSPCFSLGFMAANLAILEATMEQTTGNTIGSNKIHVIDFDIGQGGQYMNLFHALSARLNGKPAIVKVTAVAD---GTASEEKLKAVRDKLSQVAERVGVCLRFNVAICLKFDDLSRDSLGCEPDETLAVNFAFKLFRMPDESVSTENPRDELLRRVKGLSPSVVTLVEQETNTNTAPFMARVNEACAYYGALFDSIESTVLRDHSDR 772
            ++ +  G+  +R+  +   AL +R++P+      +    ++   S + L D  P      + AN AILEAT +        SNKIH++DF I QG Q+  L  AL+ R +GKP  ++V+ +     G + E  L A  ++L   A+ + +   F + I      L+  S   +PDE LAVNF  +L+++ DE   T    D  LR  K L+P VVTL E E + N   F  RV  A  +Y A+F+S+E  + RD  +R
Sbjct:  244 ESVSELGDPTERVAFYFTEALSNRLSPNSPATSSSSSSTEDLILSYKTLNDACPYSKFAHLTANQAILEATEK--------SNKIHIVDFGIVQGIQWPALLQALATRTSGKPTQIRVSGIPAPSLGESPEPSLIATGNRLRDFAKVLDLNFDF-IPILTPIHLLNGSSFRVDPDEVLAVNFMLQLYKLLDE---TPTIVDTALRLAKSLNPRVVTLGEYEVSLNRVGFANRVKNALQFYSAVFESLEPNLGRDSEER 489          
BLAST of CN188892 vs. ExPASy Swiss-Prot
Match: GAI_SOLLC (DELLA protein GAI OS=Solanum lycopersicum GN=GAI PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 4.583e-24
Identity = 73/200 (36.50%), Postives = 101/200 (50.50%), Query Frame = 2
Query:  155 YDFSPCFSLGFMAANLAILEATMEQTTGNTIGSNKIHVIDFDIGQGGQYMNLFHALSARLNGKPAIVKVTAVADGTASEEKLKAVRDKLSQVAERVGVCLRFNVAICLKFDDLSRDSLGCEPDET--LAVNFAFKLFRMPDESVSTENPRDELLRRVKGLSPSVVTLVEQETNTNTAPFMARVNEACAYYGALFDSIEST 748
            Y+  P        AN AILEA          G NK+HVIDF + QG Q+  L  AL+ R  G PA            + + L+ V  KL+Q+AE +GV   F   +     DL    L   P ET  +A+N  F+L R+    +S     +++L  +K ++P +VTLVEQE N N   F+ R NEA  YY  +FDS+ES+
Sbjct:  273 YETCPYLKFAHFTANQAILEAFT--------GCNKVHVIDFSLKQGMQWPALMQALALRPGGPPAFRLTGIGPPQPDNTDALQQVGWKLAQLAETIGVEFEFRGFVANSLADLDATILDIRPSETEAVAINSVFELHRL----LSRPGAIEKVLNSIKQINPKIVTLVEQEANHNAGVFIDRFNEALHYYSTMFDSLESS 460          
The following BLAST results are available for this feature:
BLAST of CN188892 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 49
Match NameE-valueIdentityDescription
SCL8_ARATH2.094e-7758.43Scarecrow-like protein 8 OS=Arabidopsis thaliana G... [more]
SCL1_ARATH3.987e-4439.93Scarecrow-like protein 1 OS=Arabidopsis thaliana G... [more]
PAT1_ARATH6.800e-4445.37Scarecrow-like transcription factor PAT1 OS=Arabid... [more]
SCL21_ARATH8.602e-3944.23Scarecrow-like protein 21 OS=Arabidopsis thaliana ... [more]
SCL5_ARATH5.576e-3839.92Scarecrow-like protein 5 OS=Arabidopsis thaliana G... [more]
CIGR1_ORYSJ1.242e-3742.01Chitin-inducible gibberellin-responsive protein 1 ... [more]
SCL13_ARATH4.720e-3738.28Scarecrow-like protein 13 OS=Arabidopsis thaliana ... [more]
CIGR2_ORYSJ6.165e-3743.81Chitin-inducible gibberellin-responsive protein 2 ... [more]
SCL4_ARATH9.865e-2732.56Scarecrow-like protein 4 OS=Arabidopsis thaliana G... [more]
GAI_SOLLC4.583e-2436.50DELLA protein GAI OS=Solanum lycopersicum GN=GAI P... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006P18_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006P18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188892 ID=CN188892; Name=CN188892; organism=Citrus sinensis; type=EST; length=773bp
GGCTGACCAGGCGACGAATTCGAAAGGGAATTCGGAACAGAGGTTGATGG
AGCACATGTGTTCAGCGTTGAAGTCGCGCGTGAACCCACACGAGAACCCG
CCGCCTGTCGCTGAGTTGTTCGGCAAAGAACACGCCGAGTCGACTCAGTT
GCTTTACGATTTCTCCCCGTGTTTCAGCCTGGGCTTCATGGCTGCTAATC
TCGCCATTCTTGAAGCTACAATGGAGCAAACAACAGGTAACACAATTGGC
AGCAATAAGATTCATGTTATTGATTTCGATATCGGCCAAGGCGGACAGTA
CATGAATCTCTTCCACGCGCTCTCCGCGCGTCTAAACGGGAAACCCGCAA
TCGTTAAAGTCACAGCCGTGGCTGATGGTACTGCCAGTGAAGAGAAACTG
AAGGCCGTTCGTGATAAGCTGAGTCAAGTTGCGGAACGTGTTGGAGTTTG
TCTGCGTTTCAACGTAGCAATCTGTTTGAAATTCGATGATCTGAGTCGCG
ACTCACTGGGTTGCGAGCCGGATGAAACACTAGCTGTGAATTTCGCTTTC
AAGCTATTTCGAATGCCGGACGAGAGCGTGTCAACGGAGAATCCGAGGGA
CGAGCTGCTCCGGCGTGTAAAGGGGTTGTCACCGAGTGTGGTAACGTTGG
TGGAGCAAGAAACGAACACAAATACGGCGCCGTTCATGGCGCGCGTCAAC
GAGGCGTGTGCATATTACGGAGCGTTGTTTGACTCGATCGAGTCGACCGT
GCTGAGAGACCACTCGGACCGAG
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