CN182121

Overview
NameCN182121
Unique NameCN182121
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length712
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN182121_ssr183 microsatellite CN182121_ssr183:183..194. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CN182121 vs. ExPASy Swiss-Prot
Match: U326_ARATH (UPF0326 protein At4g17486 OS=Arabidopsis thaliana GN=At4g17486 PE=2 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 8.010e-49
Identity = 79/130 (60.77%), Postives = 105/130 (80.77%), Query Frame = 3
Query:  321 PVYLNVYDLTPMNGYAYWLGLGIYHSGVQVHGVEYGFGAHDHSTTGIFEVEPKQCPGFTFRKSILIGRTDLGPREVRAFMEKLAEEYSGNTYHLITKNCNHFCNDVCLKLTRKPIPRWGNRLARLGFLCN 710
            PVYLNVYDLTP+N Y YW G+GI+HSG++ H +EY +GAH++ T+G++EVEP+ CPGF FR+S+L+G T +   + R++MEKL+ +Y G+TYHLI KNCNHF  +VCL+LT KPIP W NRLAR+G  CN
Sbjct:   27 PVYLNVYDLTPVNNYLYWFGIGIFHSGIEAHNLEYCYGAHEYPTSGVYEVEPRNCPGFIFRRSVLLGTTSMSRSDFRSYMEKLSRKYHGDTYHLIAKNCNHFTEEVCLQLTGKPIPGWINRLARVGSFCN 156          
BLAST of CN182121 vs. ExPASy Swiss-Prot
Match: PPDE1_XENLA (PPPDE peptidase domain-containing protein 1 OS=Xenopus laevis GN=pppde1 PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.598e-27
Identity = 55/127 (43.31%), Postives = 81/127 (63.78%), Query Frame = 3
Query:  321 PVYLNVYDLTPMNGYAYWLGLGIYHSGVQVHGVEYGFGAHDHSTTGIFEVEPKQCPG----FTFRKSILIGRTDLGPREVRAFMEKLAEEYSGNTYHLITKNCNHFCNDVCLKLTRKPIPRWGNRLA 689
            P+ LNVYD+  +N Y   LG+G++HSG+QV+G E+ +G H +  +G+FE+ P         F F+++I +G TD    ++   +E+L +EY GN YHL+ KNCNHF + +   L  K IPRW NRLA
Sbjct:    5 PIILNVYDMYWINEYTSSLGIGVFHSGIQVYGREFAYGGHPYPFSGVFEISPGDSTELGDTFKFKEAIALGSTDFTENDIEKIIEELGKEYKGNAYHLMHKNCNHFSSALSEILCGKEIPRWVNRLA 131          
BLAST of CN182121 vs. ExPASy Swiss-Prot
Match: PPDE1_DANRE (PPPDE peptidase domain-containing protein 1 OS=Danio rerio GN=pppde1 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.586e-26
Identity = 53/127 (41.73%), Postives = 82/127 (64.57%), Query Frame = 3
Query:  321 PVYLNVYDLTPMNGYAYWLGLGIYHSGVQVHGVEYGFGAHDHSTTGIFEVEPKQCPG----FTFRKSILIGRTDLGPREVRAFMEKLAEEYSGNTYHLITKNCNHFCNDVCLKLTRKPIPRWGNRLA 689
            PV LNVYD+  +N +   LG+G++HSG++++G E+ +G H +  +GIFE+ P         F F+++I++G TD    +V   +E++ +EY GN YHL+ KNCNHF + +   L  + IPRW NRLA
Sbjct:    5 PVILNVYDMYWINEFTSSLGIGVFHSGIEIYGREFAYGGHPYPFSGIFEITPGDATELGETFKFKEAIVLGSTDFTEEDVERIVEEMGKEYKGNAYHLMHKNCNHFSSALSEILCGREIPRWVNRLA 131          
BLAST of CN182121 vs. ExPASy Swiss-Prot
Match: PPDE1_RAT (PPPDE peptidase domain-containing protein 1 OS=Rattus norvegicus GN=Pppde1 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 7.295e-26
Identity = 54/126 (42.86%), Postives = 81/126 (64.29%), Query Frame = 3
Query:  324 VYLNVYDLTPMNGYAYWLGLGIYHSGVQVHGVEYGFGAHDHSTTGIFEVEPKQCPG----FTFRKSILIGRTDLGPREVRAFMEKLAEEYSGNTYHLITKNCNHFCNDVCLKLTRKPIPRWGNRLA 689
            V LNVYD+  MN Y   +G+G++HSG++V+G E+ +G H +  +GIFE+ P         F F++++++G TD    ++   +E+L +EY GN YHL+ KNCNHF + +   L  K IPRW NRLA
Sbjct:    7 VVLNVYDMYWMNEYTSSIGIGVFHSGIEVYGREFAYGGHPYPFSGIFEISPGNAAELGETFKFKEAVVLGSTDFLEDDIEKIVEELGKEYKGNAYHLMHKNCNHFSSALSEILCGKEIPRWINRLA 132          
BLAST of CN182121 vs. ExPASy Swiss-Prot
Match: PPDE1_PONAB (PPPDE peptidase domain-containing protein 1 OS=Pongo abelii GN=PPPDE1 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 7.295e-26
Identity = 54/126 (42.86%), Postives = 81/126 (64.29%), Query Frame = 3
Query:  324 VYLNVYDLTPMNGYAYWLGLGIYHSGVQVHGVEYGFGAHDHSTTGIFEVEPKQCPG----FTFRKSILIGRTDLGPREVRAFMEKLAEEYSGNTYHLITKNCNHFCNDVCLKLTRKPIPRWGNRLA 689
            V LNVYD+  MN Y   +G+G++HSG++V+G E+ +G H +  +GIFE+ P         F F++++++G TD    ++   +E+L +EY GN YHL+ KNCNHF + +   L  K IPRW NRLA
Sbjct:    7 VVLNVYDMYWMNEYTSSIGIGVFHSGIEVYGREFAYGGHPYPFSGIFEISPGNASELGETFKFKEAVVLGSTDFLEDDIEKIVEELGKEYKGNAYHLMHKNCNHFSSALSEILCGKEIPRWINRLA 132          
BLAST of CN182121 vs. ExPASy Swiss-Prot
Match: PPDE1_PIG (PPPDE peptidase domain-containing protein 1 OS=Sus scrofa GN=PPPDE1 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 7.295e-26
Identity = 54/126 (42.86%), Postives = 81/126 (64.29%), Query Frame = 3
Query:  324 VYLNVYDLTPMNGYAYWLGLGIYHSGVQVHGVEYGFGAHDHSTTGIFEVEPKQCPG----FTFRKSILIGRTDLGPREVRAFMEKLAEEYSGNTYHLITKNCNHFCNDVCLKLTRKPIPRWGNRLA 689
            V LNVYD+  MN Y   +G+G++HSG++V+G E+ +G H +  +GIFE+ P         F F++++++G TD    ++   +E+L +EY GN YHL+ KNCNHF + +   L  K IPRW NRLA
Sbjct:    7 VVLNVYDMYWMNEYTSSIGIGVFHSGIEVYGREFAYGGHPYPFSGIFEISPGNASELGETFKFKEAVVLGSTDFLEDDIEKIVEELGKEYKGNAYHLMHKNCNHFSSALSEILCGKEIPRWINRLA 132          
BLAST of CN182121 vs. ExPASy Swiss-Prot
Match: PPDE1_MOUSE (PPPDE peptidase domain-containing protein 1 OS=Mus musculus GN=Pppde1 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 7.295e-26
Identity = 54/126 (42.86%), Postives = 81/126 (64.29%), Query Frame = 3
Query:  324 VYLNVYDLTPMNGYAYWLGLGIYHSGVQVHGVEYGFGAHDHSTTGIFEVEPKQCPG----FTFRKSILIGRTDLGPREVRAFMEKLAEEYSGNTYHLITKNCNHFCNDVCLKLTRKPIPRWGNRLA 689
            V LNVYD+  MN Y   +G+G++HSG++V+G E+ +G H +  +GIFE+ P         F F++++++G TD    ++   +E+L +EY GN YHL+ KNCNHF + +   L  K IPRW NRLA
Sbjct:    7 VVLNVYDMYWMNEYTSSIGIGVFHSGIEVYGREFAYGGHPYPFSGIFEISPGNASELGETFKFKEAVVLGSTDFLEDDIEKIVEELGKEYKGNAYHLMHKNCNHFSSALSEILCGKEIPRWINRLA 132          
BLAST of CN182121 vs. ExPASy Swiss-Prot
Match: PPDE1_HUMAN (PPPDE peptidase domain-containing protein 1 OS=Homo sapiens GN=PPPDE1 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 7.295e-26
Identity = 54/126 (42.86%), Postives = 81/126 (64.29%), Query Frame = 3
Query:  324 VYLNVYDLTPMNGYAYWLGLGIYHSGVQVHGVEYGFGAHDHSTTGIFEVEPKQCPG----FTFRKSILIGRTDLGPREVRAFMEKLAEEYSGNTYHLITKNCNHFCNDVCLKLTRKPIPRWGNRLA 689
            V LNVYD+  MN Y   +G+G++HSG++V+G E+ +G H +  +GIFE+ P         F F++++++G TD    ++   +E+L +EY GN YHL+ KNCNHF + +   L  K IPRW NRLA
Sbjct:    7 VVLNVYDMYWMNEYTSSIGIGVFHSGIEVYGREFAYGGHPYPFSGIFEISPGNASELGETFKFKEAVVLGSTDFLEDDIEKIVEELGKEYKGNAYHLMHKNCNHFSSALSEILCGKEIPRWINRLA 132          
BLAST of CN182121 vs. ExPASy Swiss-Prot
Match: PPDE1_CHICK (PPPDE peptidase domain-containing protein 1 OS=Gallus gallus GN=PPPDE1 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 7.295e-26
Identity = 54/126 (42.86%), Postives = 81/126 (64.29%), Query Frame = 3
Query:  324 VYLNVYDLTPMNGYAYWLGLGIYHSGVQVHGVEYGFGAHDHSTTGIFEVEPKQCPG----FTFRKSILIGRTDLGPREVRAFMEKLAEEYSGNTYHLITKNCNHFCNDVCLKLTRKPIPRWGNRLA 689
            V LNVYD+  MN Y   LG+G++HSG++V+G E+ +G H +  +GIFE+ P         F F++++++G TD    ++   +E+L +E+ GN YHL+ KNCNHF + +   L  K IPRW NRLA
Sbjct:    6 VILNVYDMYWMNEYTSSLGIGVFHSGIEVYGREFAYGGHPYPFSGIFEISPGNASELGETFKFKEAVVLGSTDFMEDDIEKIVEELGKEFKGNAYHLMHKNCNHFSSALSEILCGKEIPRWVNRLA 131          
BLAST of CN182121 vs. ExPASy Swiss-Prot
Match: HAG1_SCHPO (UPF0326 protein hag1 OS=Schizosaccharomyces pombe GN=hag1 PE=1 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.682e-22
Identity = 55/130 (42.31%), Postives = 84/130 (64.62%), Query Frame = 3
Query:  324 VYLNVYDL---TPMNGYAYWLGLGIYHSGVQVHGVEYGFGAHD-HSTTGIFEVEPKQ-CPGFTFRKSILIGRTDLGPREVRAFMEKLAEEYSGNTYHLITKNCNHFCNDVCLKLTRKPIPRWGNRLARLG 698
            VY+NVYDL   +P+N  A+ LGLGIYH+G+ + G EY FGAH+   +TG+F   P+    G  +R SI +    L   +V   + +L++E++G +Y L+ +NCNHF N   ++LT  PIP + NR++R+G
Sbjct:    3 VYINVYDLMPDSPVNKLAWTLGLGIYHTGLVLEGKEYAFGAHEIPGSTGVFATMPRPPLEGCRWRCSIALPNCTLPKPDVDRILIRLSQEFTGLSYSLLERNCNHFTNAAAIELTGSPIPSFLNRISRIG 132          
The following BLAST results are available for this feature:
BLAST of CN182121 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
U326_ARATH8.010e-4960.77UPF0326 protein At4g17486 OS=Arabidopsis thaliana ... [more]
PPDE1_XENLA6.598e-2743.31PPPDE peptidase domain-containing protein 1 OS=Xen... [more]
PPDE1_DANRE5.586e-2641.73PPPDE peptidase domain-containing protein 1 OS=Dan... [more]
PPDE1_RAT7.295e-2642.86PPPDE peptidase domain-containing protein 1 OS=Rat... [more]
PPDE1_PONAB7.295e-2642.86PPPDE peptidase domain-containing protein 1 OS=Pon... [more]
PPDE1_PIG7.295e-2642.86PPPDE peptidase domain-containing protein 1 OS=Sus... [more]
PPDE1_MOUSE7.295e-2642.86PPPDE peptidase domain-containing protein 1 OS=Mus... [more]
PPDE1_HUMAN7.295e-2642.86PPPDE peptidase domain-containing protein 1 OS=Hom... [more]
PPDE1_CHICK7.295e-2642.86PPPDE peptidase domain-containing protein 1 OS=Gal... [more]
HAG1_SCHPO1.682e-2242.31UPF0326 protein hag1 OS=Schizosaccharomyces pombe ... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_0001P17_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001P17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182121 ID=CN182121; Name=CN182121; organism=Citrus sinensis; type=EST; length=712bp
GAGGGGCTTTCGGCACCCTGCCGGTAGAACCAAAGTAGAAGATTCTTATC
AAATAAAATAAATCCACGAAACAATTCCTACTGTGAGCCTTGATTTCCCA
ATTTACCCCCAGAAGTTTCCGTTAATTGCAGGAAGCTCCCCGCAGTACCC
CTCCTACTCGCCCACTGCCTGTCACACTCCATCTCCTCCTCCTCTGTTAT
CTCTTCTCTTTCTTTTCACCAAAGCGGAGCTAAACAAAAGCAAAAGCAAA
AGCAAAAGCAAAGCACAAAATGCTTTGCCGAATGGTTACGGTTCCGCGGA
AGAAAAAAACCGGTTCGGTTCCGGTTTATTTGAACGTCTACGATTTAACT
CCGATGAATGGCTACGCTTATTGGCTCGGCCTCGGGATCTACCATTCTGG
CGTCCAAGTTCATGGCGTTGAGTACGGATTCGGAGCGCACGATCATTCGA
CGACGGGGATATTTGAAGTGGAGCCGAAGCAGTGTCCGGGATTCACGTTT
AGGAAGTCGATATTGATCGGGAGAACGGATCTCGGGCCGAGGGAAGTGCG
CGCGTTTATGGAAAAACTCGCCGAGGAGTATTCTGGCAATACGTATCATC
TAATCACCAAGAACTGTAATCATTTCTGCAATGATGTGTGTCTTAAGCTC
ACTAGGAAACCAATTCCTCGATGGGGTAATCGTCTCGCTCGCTTGGGTTT
TCTCTGCAACTG
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