CN182114

Overview
NameCN182114
Unique NameCN182114
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length374
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6199 contig Csv1_Contig6199:536..909. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN182114 vs. ExPASy Swiss-Prot
Match: RS8_MAIZE (40S ribosomal protein S8 OS=Zea mays GN=RPS8 PE=2 SV=2)

HSP 1 Score: 135.961 bits (341), Expect = 5.807e-32
Identity = 65/73 (89.04%), Postives = 69/73 (94.52%), Query Frame = -1
Query:  156 KKSNHFSRKLEKRQKDRTLDPHIEEQFGSGRLLACIASRPGQCGRVDGYILEGKELEFYMKKLQRKKGKSAGA 374
            KKSNH +RKLEKR++ RTLDPHIEEQFGSGRLLACI+SRPGQCGR DGYILEGKELEFYMKKLQRKKGKSA A
Sbjct:  149 KKSNHVTRKLEKRKEGRTLDPHIEEQFGSGRLLACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKSAVA 221          
BLAST of CN182114 vs. ExPASy Swiss-Prot
Match: RS8_ORYSJ (40S ribosomal protein S8 OS=Oryza sativa subsp. japonica GN=RPS8 PE=2 SV=2)

HSP 1 Score: 132.88 bits (333), Expect = 4.916e-31
Identity = 64/73 (87.67%), Postives = 66/73 (90.41%), Query Frame = -1
Query:  156 KKSNHFSRKLEKRQKDRTLDPHIEEQFGSGRLLACIASRPGQCGRVDGYILEGKELEFYMKKLQRKKGKSAGA 374
            KKSNH  RKLEKRQ+ RTLD HIEEQFGSGRLLACI+SRPGQCGR DGYILEGKELEFYMKKLQRKKGK A A
Sbjct:  148 KKSNHVVRKLEKRQQGRTLDAHIEEQFGSGRLLACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGASA 220          
BLAST of CN182114 vs. ExPASy Swiss-Prot
Match: RS82_ARATH (40S ribosomal protein S8-2 OS=Arabidopsis thaliana GN=RPS8B PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 2.440e-30
Identity = 62/74 (83.78%), Postives = 66/74 (89.19%), Query Frame = -1
Query:  153 KKSNHFSRKLEKRQKDRTLDPHIEEQFGSGRLLACIASRPGQCGRVDGYILEGKELEFYMKKLQRKKGKSAGAA 374
            KKSNH  RKLE RQ+ R LD H+EEQF SGRLLACIASRPGQCGR DGYILEGKELEFYMKKLQ+KKGK+AGAA
Sbjct:  137 KKSNHVQRKLEMRQEGRALDSHLEEQFSSGRLLACIASRPGQCGRADGYILEGKELEFYMKKLQKKKGKNAGAA 210          
BLAST of CN182114 vs. ExPASy Swiss-Prot
Match: RS8_PRUAR (40S ribosomal protein S8 OS=Prunus armeniaca GN=RPS8 PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 2.698e-29
Identity = 61/74 (82.43%), Postives = 66/74 (89.19%), Query Frame = -1
Query:  153 KKSNHFSRKLEKRQKDRTLDPHIEEQFGSGRLLACIASRPGQCGRVDGYILEGKELEFYMKKLQRKKGKSAGAA 374
            KKSNH + KLEKRQ+ RTLD HIEEQFG G+LLACI+SRPGQCG+ DG ILEGKELEFYMKKLQRKKGK AGAA
Sbjct:  147 KKSNHVAIKLEKRQQGRTLDAHIEEQFGGGKLLACISSRPGQCGKADGDILEGKELEFYMKKLQRKKGKGAGAA 220          
BLAST of CN182114 vs. ExPASy Swiss-Prot
Match: RS81_ARATH (40S ribosomal protein S8-1 OS=Arabidopsis thaliana GN=RPS8A PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 4.307e-27
Identity = 55/71 (77.46%), Postives = 62/71 (87.32%), Query Frame = -1
Query:  162 KKSNHFSRKLEKRQKDRTLDPHIEEQFGSGRLLACIASRPGQCGRVDGYILEGKELEFYMKKLQRKKGKSA 374
            KKSNH  RK+  RQ+ R+LD HIE+QF SGRLLACI+SRPGQCGR DGYILEGKELEFYMKK+Q+KKGK A
Sbjct:  151 KKSNHLLRKIASRQEGRSLDSHIEDQFASGRLLACISSRPGQCGRADGYILEGKELEFYMKKIQKKKGKGA 221          
BLAST of CN182114 vs. ExPASy Swiss-Prot
Match: RS8_XENLA (40S ribosomal protein S8 OS=Xenopus laevis GN=rps8 PE=2 SV=3)

HSP 1 Score: 97.0561 bits (240), Expect = 2.990e-20
Identity = 43/69 (62.32%), Postives = 55/69 (79.71%), Query Frame = -1
Query:  168 KKSNHFSRKLEKRQKDRTLDPHIEEQFGSGRLLACIASRPGQCGRVDGYILEGKELEFYMKKLQRKKGK 374
            K+S    +K E+R+K   + P +EEQF  G+LLACIASRPGQCGR DGY+LEGKELEFY++K++ KKGK
Sbjct:  140 KRSKKTQKKYEERKKTAKISPLLEEQFQQGKLLACIASRPGQCGRADGYVLEGKELEFYLRKIKAKKGK 208          
BLAST of CN182114 vs. ExPASy Swiss-Prot
Match: RS8_ICTPU (40S ribosomal protein S8 OS=Ictalurus punctatus GN=rps8 PE=2 SV=3)

HSP 1 Score: 96.6709 bits (239), Expect = 3.904e-20
Identity = 41/69 (59.42%), Postives = 56/69 (81.16%), Query Frame = -1
Query:  168 KKSNHFSRKLEKRQKDRTLDPHIEEQFGSGRLLACIASRPGQCGRVDGYILEGKELEFYMKKLQRKKGK 374
            K+S    +K +KR+K+  + P ++EQF  G+LLACI+SRPGQCGR DGY+LEGKELEFY++K++ KKGK
Sbjct:  140 KRSKKVQKKFDKRRKNSKISPLLDEQFQQGKLLACISSRPGQCGRADGYVLEGKELEFYLRKIKAKKGK 208          
BLAST of CN182114 vs. ExPASy Swiss-Prot
Match: RS8_RAT (40S ribosomal protein S8 OS=Rattus norvegicus GN=Rps8 PE=1 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 4.317e-19
Identity = 40/69 (57.97%), Postives = 55/69 (79.71%), Query Frame = -1
Query:  168 KKSNHFSRKLEKRQKDRTLDPHIEEQFGSGRLLACIASRPGQCGRVDGYILEGKELEFYMKKLQRKKGK 374
            K+S    +K ++R+K+  +   +EEQF  G+LLACIASRPGQCGR DGY+LEGKELEFY++K++ +KGK
Sbjct:  140 KRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRPGQCGRADGYVLEGKELEFYLRKIKARKGK 208          
BLAST of CN182114 vs. ExPASy Swiss-Prot
Match: RS8_MOUSE (40S ribosomal protein S8 OS=Mus musculus GN=Rps8 PE=1 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 4.317e-19
Identity = 40/69 (57.97%), Postives = 55/69 (79.71%), Query Frame = -1
Query:  168 KKSNHFSRKLEKRQKDRTLDPHIEEQFGSGRLLACIASRPGQCGRVDGYILEGKELEFYMKKLQRKKGK 374
            K+S    +K ++R+K+  +   +EEQF  G+LLACIASRPGQCGR DGY+LEGKELEFY++K++ +KGK
Sbjct:  140 KRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRPGQCGRADGYVLEGKELEFYLRKIKARKGK 208          
BLAST of CN182114 vs. ExPASy Swiss-Prot
Match: RS8_MACFA (40S ribosomal protein S8 OS=Macaca fascicularis GN=RPS8 PE=2 SV=3)

HSP 1 Score: 93.2041 bits (230), Expect = 4.317e-19
Identity = 40/69 (57.97%), Postives = 55/69 (79.71%), Query Frame = -1
Query:  168 KKSNHFSRKLEKRQKDRTLDPHIEEQFGSGRLLACIASRPGQCGRVDGYILEGKELEFYMKKLQRKKGK 374
            K+S    +K ++R+K+  +   +EEQF  G+LLACIASRPGQCGR DGY+LEGKELEFY++K++ +KGK
Sbjct:  140 KRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRPGQCGRADGYVLEGKELEFYLRKIKARKGK 208          
The following BLAST results are available for this feature:
BLAST of CN182114 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
RS8_MAIZE5.807e-3289.0440S ribosomal protein S8 OS=Zea mays GN=RPS8 PE=2 ... [more]
RS8_ORYSJ4.916e-3187.6740S ribosomal protein S8 OS=Oryza sativa subsp. ja... [more]
RS82_ARATH2.440e-3083.7840S ribosomal protein S8-2 OS=Arabidopsis thaliana... [more]
RS8_PRUAR2.698e-2982.4340S ribosomal protein S8 OS=Prunus armeniaca GN=RP... [more]
RS81_ARATH4.307e-2777.4640S ribosomal protein S8-1 OS=Arabidopsis thaliana... [more]
RS8_XENLA2.990e-2062.3240S ribosomal protein S8 OS=Xenopus laevis GN=rps8... [more]
RS8_ICTPU3.904e-2059.4240S ribosomal protein S8 OS=Ictalurus punctatus GN... [more]
RS8_RAT4.317e-1957.9740S ribosomal protein S8 OS=Rattus norvegicus GN=R... [more]
RS8_MOUSE4.317e-1957.9740S ribosomal protein S8 OS=Mus musculus GN=Rps8 P... [more]
RS8_MACFA4.317e-1957.9740S ribosomal protein S8 OS=Macaca fascicularis GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001P14_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001P14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182114 ID=CN182114; Name=CN182114; organism=Citrus sinensis; type=EST; length=374bp
TTCGAAACTAAATATAACAATAACACAAGTGAGAAATACAAGTTCGACTG
CTGATATCATCTCGACTCTCGAAGTTTTAACTTAAGACTAAAAACAAGAA
CACAAGACCAAACTAGAAATTCCAGTACGGAGTTTCAATAAACAAAAATT
TAAGCAGCACCAGCACTCTTGCCCTTCTTCCTCTGTAACTTCTTCATGTA
GAATTCCAGTTCTTTACCCTCCAAGATGTATCCATCAACACGTCCACACT
GGCCAGGCCGTGATGCGATACAAGCTAACAAACGACCACTACCAAACTGC
TCCTCAATATGTGGGTCAAGTGTGCGATCTTTTTGACGCTTCTCAAGCTT
TCTCGAGAAATGGTTGCTCTTCTT
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