CN182113

Overview
NameCN182113
Unique NameCN182113
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length631
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11971 contig Csv1_Contig11971:28..658. BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins
Homology
BLAST of CN182113 vs. ExPASy Swiss-Prot
Match: ATPBM_HEVBR (ATP synthase subunit beta, mitochondrial OS=Hevea brasiliensis GN=ATPB PE=2 SV=1)

HSP 1 Score: 245.743 bits (626), Expect = 1.421e-64
Identity = 124/169 (73.37%), Postives = 136/169 (80.47%), Query Frame = 2
Query:  125 SPAATRRASPYGHLLSRVSEYXXXXXXXXXXXXXXKSDVKKGGGGKITDEFTGKGAIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPA 631
            SP++  RASPYG+LL+R +EY                     GGGKITDEFTGKGAIGQVCQVIGAVVDVRFDEGLPPILT+LEV+DHS+RLVLEVAQHMGEG+VRTIAMDGTEGLVRGQRVLNTGSPITVPVGR        VIGEPIDE+GD+KT H+LPIHREAPA
Sbjct:   35 SPSSKSRASPYGYLLTRAAEYATSAAAAAPPQPPPAKPEGGKGGGKITDEFTGKGAIGQVCQVIGAVVDVRFDEGLPPILTSLEVLDHSIRLVLEVAQHMGEGMVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRANPWTYHEVIGEPIDERGDIKTSHFLPIHREAPA 203          
BLAST of CN182113 vs. ExPASy Swiss-Prot
Match: ATPBM_MAIZE (ATP synthase subunit beta, mitochondrial OS=Zea mays GN=ATPB PE=2 SV=1)

HSP 1 Score: 242.276 bits (617), Expect = 1.571e-63
Identity = 127/175 (72.57%), Postives = 140/175 (80.00%), Query Frame = 2
Query:  125 SPAATR------RASPYGHLLSRVSEYXXXXXXXXXXXXXXKSDVKKGGGGKITDEFTGKGAIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPA 631
            SPAA R      R SP G+L +R + Y               +   K GGGKITDEFTG GAIGQVCQVIGAVVDVRFDEGLPPILTALEV+D+++RLVLEVAQH+GE +VRTIAMDGTEGLVRGQRVLNTGSPITVPVGR TLGRI+NVIGEPIDEKGD+KT H+LPIHREAPA
Sbjct:   21 SPAAPRPRAPPHRPSPAGYLFNRAAAYASSAAAQAAPATPPPA-TGKTGGGKITDEFTGAGAIGQVCQVIGAVVDVRFDEGLPPILTALEVLDNNIRLVLEVAQHLGENMVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRATLGRIINVIGEPIDEKGDIKTNHFLPIHREAPA 194          
BLAST of CN182113 vs. ExPASy Swiss-Prot
Match: ATPBM_ORYSJ (ATP synthase subunit beta, mitochondrial OS=Oryza sativa subsp. japonica GN=ATPB PE=1 SV=2)

HSP 1 Score: 241.506 bits (615), Expect = 2.680e-63
Identity = 122/163 (74.85%), Postives = 134/163 (82.21%), Query Frame = 2
Query:  143 RASPYGHLLSRVSEYXXXXXXXXXXXXXXKSDVKKGGGGKITDEFTGKGAIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPA 631
            R SP G+L +R + Y               +  K  GGGKITDEFTG GA+GQVCQVIGAVVDVRFDEGLPPILTALEV+DH++RLVLEVAQH+GE +VRTIAMDGTEGLVRGQRVLNTGSPITVPVGR TLGRIMNVIGEPIDEKGD+ T H+LPIHREAPA
Sbjct:   32 RPSPSGYLFNRAAAYATAAAAKEAAPPAPATG-KATGGGKITDEFTGAGAVGQVCQVIGAVVDVRFDEGLPPILTALEVLDHNIRLVLEVAQHLGENMVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRATLGRIMNVIGEPIDEKGDITTNHFLPIHREAPA 193          
BLAST of CN182113 vs. ExPASy Swiss-Prot
Match: ATPBM_NICPL (ATP synthase subunit beta, mitochondrial OS=Nicotiana plumbaginifolia GN=ATPB PE=1 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 1.165e-58
Identity = 119/169 (70.41%), Postives = 134/169 (79.29%), Query Frame = 2
Query:  134 ATRRASPYGHLLSRVSEYXXXXXXXXXXXXXXKSDVKKGGG---GKITDEFTGKGAIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPA 631
            A+ RASP G LL+R  +Y               S   K G    GKITDEFTG G+IG+VCQVIGAVVDVRFDEGLPPILTALEV+D+ +RLVLEVAQH+GE +VRTIAMDGTEGLVRGQRVLNTGSPITVPVGR TLGRI+NVIGE IDE+G + T+H+LPIHREAPA
Sbjct:   37 ASSRASPKGFLLNRAVQYATSAAAPASQP----STPPKSGSEPSGKITDEFTGAGSIGKVCQVIGAVVDVRFDEGLPPILTALEVLDNQIRLVLEVAQHLGENMVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRATLGRIINVIGEAIDERGPITTDHFLPIHREAPA 201          
BLAST of CN182113 vs. ExPASy Swiss-Prot
Match: ATPBN_ARATH (ATP synthase subunit beta-2, mitochondrial OS=Arabidopsis thaliana GN=At5g08690 PE=1 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 2.057e-55
Identity = 110/171 (64.33%), Postives = 132/171 (77.19%), Query Frame = 2
Query:  125 SPAATRRASPYGHLLSRVSEYXXXXXXXXXXXXXXKSDVKKGGGGKITDEFTGKGAIGQVCQVIGAVVDVRFD--EGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPA 631
            SP+  R A+P  +LL RV+EY               S       GK T ++ GKGAIG+VCQVIGA+VDVRF+  EGLPPI+T+LEV DH  RLVLEV+ H+G+ VVRTIAMDGTEGLVRG++VLNTG+PITVPVGR TLGRIMNV+GEPIDE+G++KTEHYLPIHR+APA
Sbjct:   31 SPSPARHAAPCSYLLGRVAEYATSSPASSAAP----SSAPAKDEGKKTYDYGGKGAIGRVCQVIGAIVDVRFEDQEGLPPIMTSLEVQDHPTRLVLEVSHHLGQNVVRTIAMDGTEGLVRGRKVLNTGAPITVPVGRATLGRIMNVLGEPIDERGEIKTEHYLPIHRDAPA 197          
BLAST of CN182113 vs. ExPASy Swiss-Prot
Match: ATPBM_ARATH (ATP synthase subunit beta-1, mitochondrial OS=Arabidopsis thaliana GN=At5g08670 PE=1 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 2.057e-55
Identity = 110/171 (64.33%), Postives = 132/171 (77.19%), Query Frame = 2
Query:  125 SPAATRRASPYGHLLSRVSEYXXXXXXXXXXXXXXKSDVKKGGGGKITDEFTGKGAIGQVCQVIGAVVDVRFD--EGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPA 631
            SP+  R A+P  +LL RV+EY               S       GK T ++ GKGAIG+VCQVIGA+VDVRF+  EGLPPI+T+LEV DH  RLVLEV+ H+G+ VVRTIAMDGTEGLVRG++VLNTG+PITVPVGR TLGRIMNV+GEPIDE+G++KTEHYLPIHR+APA
Sbjct:   31 SPSPARHAAPCSYLLGRVAEYATSSPASSAAP----SSAPAKDEGKKTYDYGGKGAIGRVCQVIGAIVDVRFEDQEGLPPIMTSLEVQDHPTRLVLEVSHHLGQNVVRTIAMDGTEGLVRGRKVLNTGAPITVPVGRATLGRIMNVLGEPIDERGEIKTEHYLPIHRDAPA 197          
BLAST of CN182113 vs. ExPASy Swiss-Prot
Match: ATPBO_ARATH (ATP synthase subunit beta-3, mitochondrial OS=Arabidopsis thaliana GN=At5g08680 PE=2 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 7.816e-55
Identity = 110/173 (63.58%), Postives = 131/173 (75.72%), Query Frame = 2
Query:  119 VFSPAATRRASPYGHLLSRVSEYXXXXXXXXXXXXXXKSDVKKGGGGKITDEFTGKGAIGQVCQVIGAVVDVRFD--EGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPA 631
            + SP     A+P G LL RV+EY               S       GK T ++ GKGAIG+VCQVIGA+VDVRF+  EGLPPI+T+LEV DH  RLVLEV+ H+G+ VVRTIAMDGTEGLVRG++VLNTG+PITVPVGR TLGRIMNV+GEPIDE+G++KTEHYLPIHR+APA
Sbjct:   32 LLSPGPAHGAAPCGTLLGRVAEYSTSSPANSAAP----SSAPAKDEGKKTYDYGGKGAIGRVCQVIGAIVDVRFEDQEGLPPIMTSLEVQDHPTRLVLEVSHHLGQNVVRTIAMDGTEGLVRGRKVLNTGAPITVPVGRATLGRIMNVLGEPIDERGEIKTEHYLPIHRDAPA 200          
BLAST of CN182113 vs. ExPASy Swiss-Prot
Match: ATPBM_DAUCA (ATP synthase subunit beta, mitochondrial OS=Daucus carota GN=ATPB PE=3 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 1.248e-52
Identity = 98/126 (77.78%), Postives = 113/126 (89.68%), Query Frame = 2
Query:  251 GGGKITDEFTGKGAIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAP 628
            G G ITDE TG GAIGQVCQ+IGAVVDV+F+EGLPPI+TALEV+D  +RLVLEVA  +GE  VRTIAMDGTEGLVRGQ+VLNTG+PIT+PVGR TLGRI+NVIGEPID +G++KT+ YLPIHREAP
Sbjct:   66 GKGTITDEKTGAGAIGQVCQIIGAVVDVKFEEGLPPIMTALEVIDFEIRLVLEVAPSLGENTVRTIAMDGTEGLVRGQKVLNTGAPITIPVGRATLGRIINVIGEPIDHRGEIKTDQYLPIHREAP 191          
BLAST of CN182113 vs. ExPASy Swiss-Prot
Match: ATPB_RAT (ATP synthase subunit beta, mitochondrial OS=Rattus norvegicus GN=Atp5b PE=1 SV=2)

HSP 1 Score: 168.318 bits (425), Expect = 2.883e-41
Identity = 83/113 (73.45%), Postives = 95/113 (84.07%), Query Frame = 2
Query:  290 AIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAP 628
            A GQ+  VIGAVVDV+FDEGLPPIL ALEV     RLVLEVAQH+GE  VRTIAMDGTEGLVRGQ+VL++G+PI +PVG  TLGRIMNVIGEPIDE+G +KT+ + PIH EAP
Sbjct:   59 ATGQIVAVIGAVVDVQFDEGLPPILNALEVQGRESRLVLEVAQHLGESTVRTIAMDGTEGLVRGQKVLDSGAPIKIPVGPETLGRIMNVIGEPIDERGPIKTKQFAPIHAEAP 171          
BLAST of CN182113 vs. ExPASy Swiss-Prot
Match: ATPB_HUMAN (ATP synthase subunit beta, mitochondrial OS=Homo sapiens GN=ATP5B PE=1 SV=3)

HSP 1 Score: 167.548 bits (423), Expect = 4.918e-41
Identity = 82/113 (72.57%), Postives = 95/113 (84.07%), Query Frame = 2
Query:  290 AIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAP 628
            A G++  VIGAVVDV+FDEGLPPIL ALEV     RLVLEVAQH+GE  VRTIAMDGTEGLVRGQ+VL++G+PI +PVG  TLGRIMNVIGEPIDE+G +KT+ + PIH EAP
Sbjct:   59 ATGRIVAVIGAVVDVQFDEGLPPILNALEVQGRETRLVLEVAQHLGESTVRTIAMDGTEGLVRGQKVLDSGAPIKIPVGPETLGRIMNVIGEPIDERGPIKTKQFAPIHAEAP 171          
The following BLAST results are available for this feature:
BLAST of CN182113 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPBM_HEVBR1.421e-6473.37ATP synthase subunit beta, mitochondrial OS=Hevea ... [more]
ATPBM_MAIZE1.571e-6372.57ATP synthase subunit beta, mitochondrial OS=Zea ma... [more]
ATPBM_ORYSJ2.680e-6374.85ATP synthase subunit beta, mitochondrial OS=Oryza ... [more]
ATPBM_NICPL1.165e-5870.41ATP synthase subunit beta, mitochondrial OS=Nicoti... [more]
ATPBN_ARATH2.057e-5564.33ATP synthase subunit beta-2, mitochondrial OS=Arab... [more]
ATPBM_ARATH2.057e-5564.33ATP synthase subunit beta-1, mitochondrial OS=Arab... [more]
ATPBO_ARATH7.816e-5563.58ATP synthase subunit beta-3, mitochondrial OS=Arab... [more]
ATPBM_DAUCA1.248e-5277.78ATP synthase subunit beta, mitochondrial OS=Daucus... [more]
ATPB_RAT2.883e-4173.45ATP synthase subunit beta, mitochondrial OS=Rattus... [more]
ATPB_HUMAN4.918e-4172.57ATP synthase subunit beta, mitochondrial OS=Homo s... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001P13_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001P13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182113 ID=CN182113; Name=CN182113; organism=Citrus sinensis; type=EST; length=631bp
GAGGCTCATTCTCTCAACATTGAAGCCCTGACCAATGGCTTCACGTAGAC
TCTTATCATCTCTCCTTCGCTCGTCTGTCCGCCGATCTCCCTCCAAATCT
TCGCTTTCTAACTCATCTGTGTTCTCCCCTGCCGCCACGCGCCGCGCGTC
TCCTTATGGGCACCTCCTCTCGCGCGTCTCAGAGTACGCGACCTCAGCAG
CCGCCACTGCCCCACCGGCACAGACTCCGAAGTCGGATGTAAAGAAAGGC
GGCGGTGGTAAAATCACCGATGAGTTTACTGGAAAGGGCGCGATCGGTCA
GGTTTGTCAGGTCATCGGTGCCGTCGTTGATGTCAGATTTGACGAGGGGT
TGCCTCCGATTTTGACCGCGCTTGAAGTGGTAGATCACTCCGTTCGGTTA
GTGCTTGAGGTGGCTCAGCACATGGGTGAGGGTGTTGTTAGGACTATTGC
TATGGATGGAACTGAAGGGTTGGTTCGTGGCCAGCGCGTGCTCAATACTG
GCTCTCCAATCACTGTACCTGTGGGGAGAGTTACTCTGGGTCGTATTATG
AATGTCATTGGAGAGCCTATTGATGAGAAAGGCGATCTCAAAACTGAACA
TTACTTGCCCATCCACAGAGAGGCTCCAGCA
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