CN188885

Overview
NameCN188885
Unique NameCN188885
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length698
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11533 contig Csv1_Contig11533:27..730. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188885 vs. ExPASy Swiss-Prot
Match: RK1_SPIOL (50S ribosomal protein L1, chloroplastic OS=Spinacia oleracea GN=RPL1 PE=1 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 9.848e-28
Identity = 61/68 (89.71%), Postives = 65/68 (95.59%), Query Frame = 2
Query:  491 DRTRSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPQG 694
            DRTRSKRFLEIQ LRE K+EYDLKTA+SL+KQMSSTKF ETAEAHFRLNIDPKYNDQQLRATVSLP+G
Sbjct:  115 DRTRSKRFLEIQKLREIKQEYDLKTALSLMKQMSSTKFVETAEAHFRLNIDPKYNDQQLRATVSLPKG 182          
BLAST of CN188885 vs. ExPASy Swiss-Prot
Match: RK1_ARATH (50S ribosomal protein L1, chloroplastic OS=Arabidopsis thaliana GN=RPL1 PE=1 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 7.058e-26
Identity = 57/69 (82.61%), Postives = 63/69 (91.30%), Query Frame = 2
Query:  488 RDRTRSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPQG 694
            RDRTRSKRFLEIQ LRE KKEYD+ TAISLLKQ ++T+F E+ EAHFRLNIDPKYNDQQLRATVSLP+G
Sbjct:  108 RDRTRSKRFLEIQKLRETKKEYDVNTAISLLKQTANTRFVESVEAHFRLNIDPKYNDQQLRATVSLPKG 176          
BLAST of CN188885 vs. ExPASy Swiss-Prot
Match: RK1_PEA (50S ribosomal protein L1, chloroplastic (Fragment) OS=Pisum sativum GN=RPL1 PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.054e-25
Identity = 57/68 (83.82%), Postives = 61/68 (89.71%), Query Frame = 2
Query:  491 DRTRSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPQG 694
            DR RSKRFLEIQ LRE KKEYDLKTAISL+K+ + TKF ET EAHFRLNIDPKYNDQQLRATVSLP+G
Sbjct:   53 DRVRSKRFLEIQKLRELKKEYDLKTAISLVKETAKTKFVETVEAHFRLNIDPKYNDQQLRATVSLPKG 120          
BLAST of CN188885 vs. ExPASy Swiss-Prot
Match: RK1_CYAME (50S ribosomal protein L1, chloroplastic OS=Cyanidioschyzon merolae GN=rpl1 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.526e-12
Identity = 37/65 (56.92%), Postives = 48/65 (73.85%), Query Frame = 2
Query:  500 RSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPQG 694
            RSKR+  + +L E K  Y  + A+ LLK++++ KF ETAEAH RLN+DPKY DQQ+RATV LP G
Sbjct:    3 RSKRYQSLCSLIEPKL-YSPQEALKLLKKLATAKFVETAEAHIRLNLDPKYTDQQIRATVVLPHG 66          
BLAST of CN188885 vs. ExPASy Swiss-Prot
Match: RK1_CYAPA (50S ribosomal protein L1, cyanelle OS=Cyanophora paradoxa GN=rpl1 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.801e-12
Identity = 38/67 (56.72%), Postives = 47/67 (70.15%), Query Frame = 2
Query:  494 RTRSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPQG 694
            + RS+R  E+    E ++ Y+   AI LLKQ+S+ KF ET E H RL IDPKYNDQQLRATV+LP G
Sbjct:    2 KKRSRRMQELVGKVE-EQLYEPLEAIQLLKQISTAKFIETVEVHCRLGIDPKYNDQQLRATVTLPNG 67          
BLAST of CN188885 vs. ExPASy Swiss-Prot
Match: RL1_MICAN (50S ribosomal protein L1 OS=Microcystis aeruginosa (strain NIES-843) GN=rplA PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.688e-11
Identity = 36/64 (56.25%), Postives = 46/64 (71.88%), Query Frame = 2
Query:  503 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPQG 694
            S+R  + Q   E K  Y+   A++LLK++++ KF ETAEAH RL IDPKY DQQLR TVSLP+G
Sbjct:    6 SRRLRDAQAKVENKA-YEPLEALTLLKELATAKFDETAEAHIRLGIDPKYTDQQLRTTVSLPKG 68          
BLAST of CN188885 vs. ExPASy Swiss-Prot
Match: RL1_THEM4 (50S ribosomal protein L1 OS=Thermosipho melanesiensis (strain BI429 / DSM 12029) GN=rplA PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.204e-11
Identity = 31/64 (48.44%), Postives = 46/64 (71.88%), Query Frame = 2
Query:  503 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPQG 694
            SKR+ E++ L +  KEYDL  A+ L K++++ KF ET E H + NID + +DQQ+R+T+SLP G
Sbjct:    5 SKRYNEVRKLVDRTKEYDLNEAVDLAKKVATAKFDETVELHIKTNIDYRKSDQQIRSTISLPHG 68          
BLAST of CN188885 vs. ExPASy Swiss-Prot
Match: RL1_ANAVT (50S ribosomal protein L1 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=rplA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.879e-11
Identity = 36/64 (56.25%), Postives = 45/64 (70.31%), Query Frame = 2
Query:  503 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPQG 694
            S+R  E+Q   E + EY    A+SLLK+ ++ KF E AEAH RL IDPKY DQQLR TV+LP+G
Sbjct:    6 SRRLRELQAKVEDR-EYGPLDALSLLKETATAKFAEAAEAHIRLGIDPKYTDQQLRTTVALPKG 68          
BLAST of CN188885 vs. ExPASy Swiss-Prot
Match: RL1_KOSOT (50S ribosomal protein L1 OS=Kosmotoga olearia (strain TBF 19.5.1) GN=rplA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.760e-11
Identity = 33/65 (50.77%), Postives = 43/65 (66.15%), Query Frame = 2
Query:  500 RSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPQG 694
            RSKR+LE + L +  K Y +  AI LLKQM S KF E+ E H +  I+P  +DQQ+R T+SLP G
Sbjct:    4 RSKRYLEARKLVDRTKAYTIDEAIELLKQMPSAKFDESIELHIKTGIEPSKSDQQVRGTISLPHG 68          
BLAST of CN188885 vs. ExPASy Swiss-Prot
Match: RL1_CYAP8 (50S ribosomal protein L1 OS=Cyanothece sp. (strain PCC 8801) GN=rplA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.760e-11
Identity = 35/64 (54.69%), Postives = 43/64 (67.19%), Query Frame = 2
Query:  503 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPQG 694
            SKRF E     +  + Y    A+ LLK+ ++ KF E+AEAH RL IDPKY DQQLR TVSLP+G
Sbjct:    6 SKRFKEALAKVDQNQTYAPLEALQLLKETATAKFNESAEAHIRLGIDPKYTDQQLRTTVSLPKG 69          
The following BLAST results are available for this feature:
BLAST of CN188885 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
RK1_SPIOL9.848e-2889.7150S ribosomal protein L1, chloroplastic OS=Spinaci... [more]
RK1_ARATH7.058e-2682.6150S ribosomal protein L1, chloroplastic OS=Arabido... [more]
RK1_PEA2.054e-2583.8250S ribosomal protein L1, chloroplastic (Fragment)... [more]
RK1_CYAME1.526e-1256.9250S ribosomal protein L1, chloroplastic OS=Cyanidi... [more]
RK1_CYAPA5.801e-1256.7250S ribosomal protein L1, cyanelle OS=Cyanophora p... [more]
RL1_MICAN1.688e-1156.2550S ribosomal protein L1 OS=Microcystis aeruginosa... [more]
RL1_THEM42.204e-1148.4450S ribosomal protein L1 OS=Thermosipho melanesien... [more]
RL1_ANAVT2.879e-1156.2550S ribosomal protein L1 OS=Anabaena variabilis (s... [more]
RL1_KOSOT3.760e-1150.7750S ribosomal protein L1 OS=Kosmotoga olearia (str... [more]
RL1_CYAP83.760e-1154.6950S ribosomal protein L1 OS=Cyanothece sp. (strain... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0006P10_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006P10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188885 ID=CN188885; Name=CN188885; organism=Citrus sinensis; type=EST; length=698bp
CTTCTTCTGGCACTTTTTTTCTGGGTAGGTATAGCAATTTGCAATAGCAG
TGCATATATACAAATTACATAACTCAAAAAGGTTCCAATACTGTATCCGC
AAAATGGCGACATGTGGCACTACTCCGTCGTCTCTGATGCTAACATACGC
CGCCACGCCGGTACACCCGCAAGACTTGACACCCTCGCTGTCTCTTCTTT
CTTTCAAACCCTCGAAGACTGCGGCTTTCTCACTGTGCACCAACCTCAGC
GTTAGAGGAGGGGAGAGGAGGGCGAGCAAGTGGCTTGATTTGTATCCGCT
GAGACAGAACAAAAATGGGCTTCCTGGACACATGCTGGCGGCTGCTTCTG
CTGTCGAAGCTGATACTGACTTGGCCACTGACGATGTGGAGGACGATACT
CAGGGAGGTACTGAAGGAGCAACTGCTACTGCTACTGCTACTATTTCAAC
TAAGCCTAAGAAAGGCAAGGCTGCGTTGCCTCTCAAGAGAGACAGGACTA
GGTCTAAAAGATTCCTGGAAATTCAAAATTTGAGGGAAGGCAAGAAAGAG
TATGATTTGAAGACGGCAATATCTTTGTTGAAGCAGATGTCAAGTACAAA
GTTCACGGAAACAGCTGAAGCCCATTTTCGCCTCAACATTGATCCCAAAT
ACAATGATCAACAGCTTAGAGCAACAGTGAGTTTACCCCAAGGGAACT
back to top