CN188883

Overview
NameCN188883
Unique NameCN188883
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length583
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7351 contig Csv1_Contig7351:146..726. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CN188883 vs. ExPASy Swiss-Prot
Match: AKR2_ARATH (Ankyrin repeat domain-containing protein 2 OS=Arabidopsis thaliana GN=AKR2 PE=1 SV=2)

HSP 1 Score: 158.688 bits (400), Expect = 1.943e-38
Identity = 75/132 (56.82%), Postives = 98/132 (74.24%), Query Frame = 1 
Query:  187 NPFDFSAMSGLLSDPSIKELTEQIAKDAAFNSMVEQLQKTLHGANAEERIPQFDTAQYYSTMQQDMQNPQVMTMAERLGKALMQDPSMSHMMESLTNPTKKDQIEDRMAQIKEDPSLKPILDEIESGGPSAM 582
            N FDFS M+ +L+DPSI+E+ EQIAKD AFN + EQLQ+++  A  E   P FD  QY +TMQQ M NP+  TMAE+LG AL+QDP MS  +++ +NP   +   +RMA++KEDP LKPILDEI++GGPSAM
Sbjct:   45 NAFDFSNMASILNDPSIREMAEQIAKDPAFNQLAEQLQRSIPNAGQEGGFPNFDPQQYVNTMQQVMHNPEFKTMAEKLGTALVQDPQMSPFLDAFSNPETAEHFTERMARMKEDPELKPILDEIDAGGPSAM 176
The following BLAST results are available for this feature:
BLAST of CN188883 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
AKR2_ARATH1.943e-3856.82Ankyrin repeat domain-containing protein 2 OS=Arab... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0006P08_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006P08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188883 ID=CN188883; Name=CN188883; organism=Citrus sinensis; type=EST; length=583bp
TCCGATTCAGCAGCATGTTTACCTCTTAAGGAGTCTCCTCCCACCAAGGA
TGCTCCCGCTGATAAAAAAGCAGAAGGATCGACCCCTAAATCATAACCAA
CTTCGGGGGCTGGTAGAGACTCATCCAGTTCGCCTTCCGCTGCTTCTGCT
GCAAGTGCTTTTCCAGGAGATGGTGGCGCTGCTCCAAATCCTTTTGATTT
CTCCGCCATGAGTGGCCTTCTTAGTGATCCGAGCATTAAGGAACTAACTG
AACAGATTGCGAAAGATGCAGCATTCAATTCCATGGTCGAGCAACTTCAG
AAAACTTTGCATGGTGCAAATGCTGAGGAGAGGATTCCACAGTTTGACAC
AGCACAGTATTACTCCACCATGCAACAGGATATGCAGAATCCTCAGGTTA
TGACTATGGCTGAGCGCCTTGGTAAGGCTTTAATGCAGGACCCATCAATG
TCTCATATGATGGAGAGTTTGACAAACCCTACTAAAAAAGATCAGATTGA
GGACAGAATGGCTCAAATCAAGGAAGATCCCTCTTTGAAGCCTATTTTGG
ATGAGATAGAATCTGGAGGACCATCTGCTATGA
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