CN182104

Overview
NameCN182104
Unique NameCN182104
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length288
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13715 contig Csv1_Contig13715:521..808. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN182104 vs. ExPASy Swiss-Prot
Match: VATL_TOBAC (V-type proton ATPase 16 kDa proteolipid subunit OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.257e-13
Identity = 41/52 (78.85%), Postives = 41/52 (78.85%), Query Frame = -1
Query:  133 GIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXLYGLIVGIILSSRAGQSRAE 288
            GIVGDAGVRANAQQPKLFVGM           LYGLIVGIILSSRAGQSRAE
Sbjct:  114 GIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAE 165          
BLAST of CN182104 vs. ExPASy Swiss-Prot
Match: VATL_SOLLC (V-type proton ATPase 16 kDa proteolipid subunit OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.257e-13
Identity = 41/52 (78.85%), Postives = 41/52 (78.85%), Query Frame = -1
Query:  133 GIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXLYGLIVGIILSSRAGQSRAE 288
            GIVGDAGVRANAQQPKLFVGM           LYGLIVGIILSSRAGQSRAE
Sbjct:  113 GIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAE 164          
BLAST of CN182104 vs. ExPASy Swiss-Prot
Match: VATL_GOSHI (V-type proton ATPase 16 kDa proteolipid subunit OS=Gossypium hirsutum GN=CVA16-2 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.257e-13
Identity = 41/52 (78.85%), Postives = 41/52 (78.85%), Query Frame = -1
Query:  133 GIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXLYGLIVGIILSSRAGQSRAE 288
            GIVGDAGVRANAQQPKLFVGM           LYGLIVGIILSSRAGQSRAE
Sbjct:  114 GIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAE 165          
BLAST of CN182104 vs. ExPASy Swiss-Prot
Match: VATL4_ARATH (V-type proton ATPase 16 kDa proteolipid subunit c4 OS=Arabidopsis thaliana GN=VHA-C4 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.257e-13
Identity = 41/52 (78.85%), Postives = 41/52 (78.85%), Query Frame = -1
Query:  133 GIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXLYGLIVGIILSSRAGQSRAE 288
            GIVGDAGVRANAQQPKLFVGM           LYGLIVGIILSSRAGQSRAE
Sbjct:  115 GIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAE 166          
BLAST of CN182104 vs. ExPASy Swiss-Prot
Match: VATL2_ARATH (V-type proton ATPase 16 kDa proteolipid subunit c2 OS=Arabidopsis thaliana GN=VHA-C2 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.257e-13
Identity = 41/52 (78.85%), Postives = 41/52 (78.85%), Query Frame = -1
Query:  133 GIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXLYGLIVGIILSSRAGQSRAE 288
            GIVGDAGVRANAQQPKLFVGM           LYGLIVGIILSSRAGQSRAE
Sbjct:  114 GIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAE 165          
BLAST of CN182104 vs. ExPASy Swiss-Prot
Match: VATL1_ARATH (V-type proton ATPase 16 kDa proteolipid subunit c1/c3/c5 OS=Arabidopsis thaliana GN=VHA-C1 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.257e-13
Identity = 41/52 (78.85%), Postives = 41/52 (78.85%), Query Frame = -1
Query:  133 GIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXLYGLIVGIILSSRAGQSRAE 288
            GIVGDAGVRANAQQPKLFVGM           LYGLIVGIILSSRAGQSRAE
Sbjct:  113 GIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAE 164          
BLAST of CN182104 vs. ExPASy Swiss-Prot
Match: VATL_PHAAU (V-type proton ATPase 16 kDa proteolipid subunit OS=Phaseolus aureus PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.800e-13
Identity = 40/52 (76.92%), Postives = 41/52 (78.85%), Query Frame = -1
Query:  133 GIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXLYGLIVGIILSSRAGQSRAE 288
            GIVGDAGVRANAQQPKLFVGM           LYGLIVGIILSSRAGQSRA+
Sbjct:  113 GIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD 164          
BLAST of CN182104 vs. ExPASy Swiss-Prot
Match: VATL_ORYSJ (V-type proton ATPase 16 kDa proteolipid subunit OS=Oryza sativa subsp. japonica GN=VATP-P1 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.800e-13
Identity = 40/52 (76.92%), Postives = 41/52 (78.85%), Query Frame = -1
Query:  133 GIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXLYGLIVGIILSSRAGQSRAE 288
            GIVGDAGVRANAQQPKLFVGM           LYGLIVGIILSSRAGQSRA+
Sbjct:  114 GIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD 165          
BLAST of CN182104 vs. ExPASy Swiss-Prot
Match: VATL_ORYSI (V-type proton ATPase 16 kDa proteolipid subunit OS=Oryza sativa subsp. indica GN=VATP-P1 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.800e-13
Identity = 40/52 (76.92%), Postives = 41/52 (78.85%), Query Frame = -1
Query:  133 GIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXLYGLIVGIILSSRAGQSRAE 288
            GIVGDAGVRANAQQPKLFVGM           LYGLIVGIILSSRAGQSRA+
Sbjct:  114 GIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD 165          
BLAST of CN182104 vs. ExPASy Swiss-Prot
Match: VATL_MESCR (V-type proton ATPase 16 kDa proteolipid subunit OS=Mesembryanthemum crystallinum GN=VMAC1 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.800e-13
Identity = 40/52 (76.92%), Postives = 41/52 (78.85%), Query Frame = -1
Query:  133 GIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXLYGLIVGIILSSRAGQSRAE 288
            GIVGDAGVRANAQQPKLFVGM           LYGLIVGIILSSRAGQSRA+
Sbjct:  114 GIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD 165          
The following BLAST results are available for this feature:
BLAST of CN182104 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
VATL_TOBAC1.257e-1378.85V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL_SOLLC1.257e-1378.85V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL_GOSHI1.257e-1378.85V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL4_ARATH1.257e-1378.85V-type proton ATPase 16 kDa proteolipid subunit c4... [more]
VATL2_ARATH1.257e-1378.85V-type proton ATPase 16 kDa proteolipid subunit c2... [more]
VATL1_ARATH1.257e-1378.85V-type proton ATPase 16 kDa proteolipid subunit c1... [more]
VATL_PHAAU2.800e-1376.92V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL_ORYSJ2.800e-1376.92V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL_ORYSI2.800e-1376.92V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL_MESCR2.800e-1376.92V-type proton ATPase 16 kDa proteolipid subunit OS... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001P09_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001P09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182104 ID=CN182104; Name=CN182104; organism=Citrus sinensis; type=EST; length=288bp
ATTATGGAATCCATCATGTACACGAGTTTATCAACTAAACTAAACAAATC
CAAAAAAAATCAACTCATACAGCTTCAATTTTCCTCAGACTGGATAAACG
TTACAAGATAACTGTTTTGACCTTTTCTTTTATTCTGCCCGAGATTGGCC
TGCTCGAGATGAGAGGATGATTCCCACGATGAGACCATAAAGAGCGAGAG
CTTCGGCAAAGATGAGAATAAGAATCATTCCCACAAACAACTTAGGCTGC
TGTGCGTTAGCCCTAACTCCCGCATCACCAACAATTCC
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