CN182101

Overview
NameCN182101
Unique NameCN182101
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length651
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN182101_ssr49 microsatellite CN182101_ssr49:49..78. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2305 contig Csv1_Contig2305:1..651. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN182101 vs. ExPASy Swiss-Prot
Match: ERG1_PANGI (Squalene monooxygenase OS=Panax ginseng PE=2 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 5.092e-44
Identity = 88/112 (78.57%), Postives = 94/112 (83.93%), Query Frame = 1
Query:  316 DVIXXXXXXXXXXLANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAA 651
            DVI          LA TLA DGRRVHVIERDL+E DRIVGELLQPGGYLKLIELGLEDCV +IDAQRVFGYAL+ DG  T++SYPLEKFHSDVAGR FHNGRFVQR+REKAA
Sbjct:   76 DVIIVGAGVAGSALAYTLANDGRRVHVIERDLTEQDRIVGELLQPGGYLKLIELGLEDCVNEIDAQRVFGYALYMDGKNTRLSYPLEKFHSDVAGRSFHNGRFVQRMREKAA 187          
BLAST of CN182101 vs. ExPASy Swiss-Prot
Match: ERG11_ARATH (Squalene monooxygenase 1,1 OS=Arabidopsis thaliana GN=SQP1,1 PE=2 SV=2)

HSP 1 Score: 126.716 bits (317), Expect = 1.031e-28
Identity = 65/114 (57.02%), Postives = 79/114 (69.30%), Query Frame = 1
Query:  316 DVIXXXXXXXXXXLANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGNRTQISYPLE--KFHSDVAGRGFHNGRFVQRLREKAA 651
            DVI          LA  LAKDGRRVHVIERDL EP+RI+GE +QPGG L L +LGLEDC+E IDAQ+  G  ++KDG     S+P++   F  D + R FHNGRFVQRLR+KA+
Sbjct:   47 DVIIVGAGVGGSALAYALAKDGRRVHVIERDLREPERIMGEFMQPGGRLMLSKLGLEDCLEGIDAQKATGMTVYKDGKEAVASFPVDNNNFPFDPSARSFHNGRFVQRLRQKAS 160          
BLAST of CN182101 vs. ExPASy Swiss-Prot
Match: ERG11_BRANA (Squalene monooxygenase 1,1 OS=Brassica napus GN=SQP1,1 PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.296e-28
Identity = 68/136 (50.00%), Postives = 86/136 (63.24%), Query Frame = 1
Query:  247 DNGADSLRKTPTTALNGECPFDADVIXXXXXXXXXXLANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGNRTQISYPLEK-FHSDVAGRGFHNGRFVQRLREKAA 651
            +N    + K P  A       DADVI          LA  LAKDGRRVHVIERD+ EP R++GE +QPGG L L +LGLEDC+E ID Q   G A++KDG +  +S+P +  F  +  GR F+NGRFVQRLR+KA+
Sbjct:   26 NNRRKKVAKLPDAATEVRRDGDADVIIVGAGVGGSALAYALAKDGRRVHVIERDMREPVRMMGEFMQPGGRLLLSKLGLEDCLEGIDEQIATGLAVYKDGQKALVSFPEDNDFPYEPTGRAFYNGRFVQRLRQKAS 161          
BLAST of CN182101 vs. ExPASy Swiss-Prot
Match: ERG12_BRANA (Squalene monooxygenase 1,2 OS=Brassica napus GN=SQP1,2 PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 5.116e-28
Identity = 64/113 (56.64%), Postives = 80/113 (70.80%), Query Frame = 1
Query:  316 DVIXXXXXXXXXXLANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGNRTQISYPLE-KFHSDVAGRGFHNGRFVQRLREKAA 651
            DVI          LA  LAKDGRRVHVIERD+ EP R++GE +QPGG L L +LGL+DC+E+IDAQ+  G  LFKDG  T   +P++  F  + +GR FHNGRFVQRLR+KA+
Sbjct:   50 DVIIVGAGVGGSALAYALAKDGRRVHVIERDMREPVRMMGEFMQPGGRLMLSKLGLQDCLEEIDAQKSTGIRLFKDGKETVACFPVDTNFPYEPSGRFFHNGRFVQRLRQKAS 162          
BLAST of CN182101 vs. ExPASy Swiss-Prot
Match: ERG12_ARATH (Squalene monooxygenase 1,2 OS=Arabidopsis thaliana GN=SQP1,2 PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.944e-27
Identity = 61/114 (53.51%), Postives = 78/114 (68.42%), Query Frame = 1
Query:  313 ADVIXXXXXXXXXXLANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGNRTQISYPLE--KFHSDVAGRGFHNGRFVQRLREKA 648
            ADVI          LA  LAKDGRRVHVIERD+ EP+R++GE +QPGG L L +LGL+DC+E IDAQ+  G A++KDG      +P++   F  + + R FHNGRFVQ+LR KA
Sbjct:   46 ADVIIVGAGVGGSALAYALAKDGRRVHVIERDMREPERMMGEFMQPGGRLMLSKLGLQDCLEDIDAQKATGLAVYKDGKEADAPFPVDNNNFSYEPSARSFHNGRFVQQLRRKA 159          
BLAST of CN182101 vs. ExPASy Swiss-Prot
Match: ERG13_ARATH (Squalene monooxygenase 2 OS=Arabidopsis thaliana GN=SQP2 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 5.294e-25
Identity = 61/113 (53.98%), Postives = 72/113 (63.72%), Query Frame = 1
Query:  316 DVIXXXXXXXXXXLANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGNRTQISYPLEK-FHSDVAGRGFHNGRFVQRLREKAA 651
            DVI          LA  LAKDGRRVHVIERDL EP R +GEL+Q GG   L +LGLEDC+E IDAQ     A++KDG    + +P +K F  +  GR   NGR VQRLR+KAA
Sbjct:   45 DVIIVGAGVAGASLAYALAKDGRRVHVIERDLKEPQRFMGELMQAGGRFMLAQLGLEDCLEDIDAQEAKSLAIYKDGKHATLPFPDDKSFPHEPVGRLLRNGRLVQRLRQKAA 157          
BLAST of CN182101 vs. ExPASy Swiss-Prot
Match: ERG1_MOUSE (Squalene monooxygenase OS=Mus musculus GN=Sqle PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 7.155e-22
Identity = 56/115 (48.70%), Postives = 73/115 (63.48%), Query Frame = 1
Query:  310 DADVIXXXXXXXXXXLANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYAL--FKDGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKA 648
            D +VI          LA  L++DGR+V VIERDL EPDRIVGELLQPGGY  L ELGL D VE ++A  + GY +  ++  +  QI YPL + +   +G  FH+GRF+  LR+ A
Sbjct:  121 DPEVIIVGSGVLGSALAAVLSRDGRKVTVIERDLKEPDRIVGELLQPGGYRVLQELGLGDTVEGLNAHHIHGYIVHDYESRSEVQIPYPLSETNQVQSGIAFHHGRFIMSLRKAA 235          
BLAST of CN182101 vs. ExPASy Swiss-Prot
Match: ERG1_HUMAN (Squalene monooxygenase OS=Homo sapiens GN=SQLE PE=2 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 9.345e-22
Identity = 57/115 (49.57%), Postives = 73/115 (63.48%), Query Frame = 1
Query:  310 DADVIXXXXXXXXXXLANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGNRT--QISYPLEKFHSDVAGRGFHNGRFVQRLREKA 648
            D +VI          L   L++DGR+V VIERDL EPDRIVGE LQPGGY  L +LGL D VE +DAQ V GY +    +++  QI YPL + +   +GR FH+GRF+  LR+ A
Sbjct:  123 DPEVIIVGAGVLGSALVAVLSRDGRKVTVIERDLKEPDRIVGEFLQPGGYHVLKDLGLGDTVEGLDAQVVNGYMIHDQESKSEVQIPYPLSENNQVQSGRAFHHGRFIMSLRKAA 237          
BLAST of CN182101 vs. ExPASy Swiss-Prot
Match: ERG1_RAT (Squalene monooxygenase OS=Rattus norvegicus GN=Sqle PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 4.638e-21
Identity = 57/141 (40.43%), Postives = 82/141 (58.16%), Query Frame = 1
Query:  232 RSKSEDNGADSLRKTPTTALNGECPFDADVIXXXXXXXXXXLANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGNRT--QISYPLEKFHSDVAGRGFHNGRFVQRLREKA 648
            R + E N +++      T+++     D +VI          LA  L++DGR V VIERDL EPDRI+GE LQPGGY  L ELGL D VE ++A  + GY +    +R+  QI YP+ + +   +G  FH+G+F+  LR+ A
Sbjct:   96 RRRKEVNLSETTLTGAATSVSTSSVTDPEVIIIGSGVLGSALATVLSRDGRTVTVIERDLKEPDRILGECLQPGGYRVLRELGLGDTVESLNAHHIHGYVIHDCESRSEVQIPYPVSENNQVQSGVAFHHGKFIMSLRKAA 236          
BLAST of CN182101 vs. ExPASy Swiss-Prot
Match: ERG1_SCHPO (Probable squalene monooxygenase OS=Schizosaccharomyces pombe GN=SPBC713.12 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 8.746e-20
Identity = 51/111 (45.95%), Postives = 64/111 (57.66%), Query Frame = 1
Query:  310 DADVIXXXXXXXXXXLANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLRE 642
            DAD+I          L   L + GR+V V+ERD+SEPDRIVGELLQPGG   L ++G+ D VE ID Q   GY +F   +   + YP +       G GFH GRFV  LR+
Sbjct:    5 DADIIIIGAGITGCALGAALGRQGRKVLVLERDMSEPDRIVGELLQPGGIEALEKIGIADAVEGIDGQWTSGYQIFYGDSNVSVPYPSKPNGGAYQGIGFHYGRFVMNLRK 115          
The following BLAST results are available for this feature:
BLAST of CN182101 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
ERG1_PANGI5.092e-4478.57Squalene monooxygenase OS=Panax ginseng PE=2 SV=1[more]
ERG11_ARATH1.031e-2857.02Squalene monooxygenase 1,1 OS=Arabidopsis thaliana... [more]
ERG11_BRANA2.296e-2850.00Squalene monooxygenase 1,1 OS=Brassica napus GN=SQ... [more]
ERG12_BRANA5.116e-2856.64Squalene monooxygenase 1,2 OS=Brassica napus GN=SQ... [more]
ERG12_ARATH1.944e-2753.51Squalene monooxygenase 1,2 OS=Arabidopsis thaliana... [more]
ERG13_ARATH5.294e-2553.98Squalene monooxygenase 2 OS=Arabidopsis thaliana G... [more]
ERG1_MOUSE7.155e-2248.70Squalene monooxygenase OS=Mus musculus GN=Sqle PE=... [more]
ERG1_HUMAN9.345e-2249.57Squalene monooxygenase OS=Homo sapiens GN=SQLE PE=... [more]
ERG1_RAT4.638e-2140.43Squalene monooxygenase OS=Rattus norvegicus GN=Sql... [more]
ERG1_SCHPO8.746e-2045.95Probable squalene monooxygenase OS=Schizosaccharom... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001P07_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001P07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182101 ID=CN182101; Name=CN182101; organism=Citrus sinensis; type=EST; length=651bp
GGCTTAGCCAGCGAGGCAACAGAAACGGAAGAAAAAAACTAAAACAAAAG
AGAGAGAGAGAGAGAGAGAGAGAGAGAGACGTCGTCTGGTTTCGGTTTCG
GTTTCTGTCCGGACCGGTGGAAAAGAAAAGAAATGGCGGATCAGTACACG
TGGGGATTGATCTTGGGCGCTGTATTGGGGCTGGTGGCCGTTTATAACCT
GGGCCTTCTTGCTTTGTATAATCTTGTCATGAGGAGCAAGAGCGAGGACA
ACGGTGCAGATTCCTTACGCAAGACTCCAACTACGGCTCTAAATGGCGAA
TGCCCCTTCGATGCTGACGTCATCGTCGTCGGCGCCGGCGTCGCTGGCGC
TGCTCTCGCTAACACTCTTGCCAAGGATGGTCGTCGAGTGCATGTGATTG
AAAGGGATTTGTCGGAGCCTGACCGAATTGTTGGTGAATTGCTGCAACCC
GGGGGCTACCTCAAATTAATTGAGTTAGGACTTGAAGATTGTGTGGAGCA
AATTGATGCTCAGCGCGTTTTTGGTTATGCCCTTTTCAAGGATGGAAATA
GGACCCAAATATCTTATCCCTTGGAAAAGTTTCACTCAGATGTTGCAGGT
AGAGGATTTCACAATGGACGTTTCGTACAGAGGCTGCGGGAGAAAGCTGC
T
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