CN182100

Overview
NameCN182100
Unique NameCN182100
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length784
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN182100 vs. ExPASy Swiss-Prot
Match: ERG1_PANGI (Squalene monooxygenase OS=Panax ginseng PE=2 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 9.089e-60
Identity = 112/143 (78.32%), Postives = 126/143 (88.11%), Query Frame = -1
Query:  356 DAPALGNYLESFYTLRKPVASTINTLAGALYQVFSASPDEARKEMRQACFDYLSLGGIFSSGPVSLLSGLNPRPLILVFHFFAVAIYGVGRILLPFPSPYRFWIGARIITSASGIIFPIMKAEGLRQMFFPATVPAYYYQAPP 784
            D+  L  YLESFYTLRKPVASTINTLAGALY+VF ASPD+AR+EMR ACFDYLSLGGI S GP++LLSGLNPRP+ L  HFFAVAIYGVGR+L+PFPSP R W+GAR+I  ASGIIFPI+K+EGLRQMFFPA VPA YY+APP
Sbjct:  396 DSSTLCKYLESFYTLRKPVASTINTLAGALYKVFCASPDKARQEMRNACFDYLSLGGICSQGPIALLSGLNPRPISLFLHFFAVAIYGVGRLLIPFPSPKRMWLGARLILGASGIIFPIIKSEGLRQMFFPAIVPA-YYRAPP 537          
BLAST of CN182100 vs. ExPASy Swiss-Prot
Match: ERG11_ARATH (Squalene monooxygenase 1,1 OS=Arabidopsis thaliana GN=SQP1,1 PE=2 SV=2)

HSP 1 Score: 139.813 bits (351), Expect = 1.616e-32
Identity = 63/137 (45.99%), Postives = 91/137 (66.42%), Query Frame = -1
Query:  374 DAPALGNYLESFYTLRKPVASTINTLAGALYQVFSASPDEARKEMRQACFDYLSLGGIFSSGPVSLLSGLNPRPLILVFHFFAVAIYGVGRILLPFPSPYRFWIGARIITSASGIIFPIMKAEGLRQMFFPATVPAY 784
            +A  +   ++SFY +RKP+++T+NTL  A  QV  AS DEA++ MRQ C+DYLS GG  +SG ++LL G+NPRP+ L++H  A+ +  +G +L PFPSP R W   R+   A  ++ P +KAEG+ QM FP    AY
Sbjct:  370 NAQKISQVIKSFYDIRKPMSATVNTLGNAFSQVLVASTDEAKEAMRQGCYDYLSSGGFRTSGMMALLGGMNPRPISLIYHLCAITLSSIGHLLSPFPSPLRIWHSLRLFGLAMKMLVPHLKAEGVSQMLFPVNAAAY 506          
BLAST of CN182100 vs. ExPASy Swiss-Prot
Match: ERG12_BRANA (Squalene monooxygenase 1,2 OS=Brassica napus GN=SQP1,2 PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.047e-31
Identity = 61/137 (44.53%), Postives = 92/137 (67.15%), Query Frame = -1
Query:  374 DAPALGNYLESFYTLRKPVASTINTLAGALYQVFSASPDEARKEMRQACFDYLSLGGIFSSGPVSLLSGLNPRPLILVFHFFAVAIYGVGRILLPFPSPYRFWIGARIITSASGIIFPIMKAEGLRQMFFPATVPAY 784
            D   +   ++SFY LRKP+++T+NTL  + +QV  AS DEA++ MRQ CFDYLS GG  +SG ++L+ G+NPRPL L +H F +++  +G++L PFP+P R W   R++  +  ++ P +KAEG+ QM  P    AY
Sbjct:  372 DENKVSEVMKSFYALRKPMSATVNTLGNSFWQVLIASTDEAKEAMRQGCFDYLSSGGFRTSGLMALIGGMNPRPLSLFYHLFVISLSSIGQLLSPFPTPLRVWHSLRLLDLSLKMLVPHLKAEGIGQMLSPTNAAAY 508          
BLAST of CN182100 vs. ExPASy Swiss-Prot
Match: ERG12_ARATH (Squalene monooxygenase 1,2 OS=Arabidopsis thaliana GN=SQP1,2 PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.333e-31
Identity = 63/138 (45.65%), Postives = 90/138 (65.22%), Query Frame = -1
Query:  371 DAPALGNYLESFYTLRKPVASTINTLAGALYQVFSASPDEARKEMRQACFDYLSLGGIFSSGPVSLLSGLNPRPLILVFHFFAVAIYGVGRILLPFPSPYRFWIGARIITSASGIIFPIMKAEGLRQMFFPATVPAYY 784
            DA  +   + SFY +RKP+++T+NTL  A  QV   S DEA++ MRQ  +DYL  GG  +SG ++LL G+NPRPL LV+H  A+ +  +G++L PFPSP R W   ++   A  ++ P +KAEG+ QM FPA   AY+
Sbjct:  371 DANKVSEVINSFYDIRKPMSATVNTLGNAFSQVLIGSTDEAKEAMRQGVYDYLCSGGFRTSGMMALLGGMNPRPLSLVYHLCAITLSSIGQLLSPFPSPLRIWHSLKLFGLAMKMLVPNLKAEGVSQMLFPANAAAYH 508          
BLAST of CN182100 vs. ExPASy Swiss-Prot
Match: ERG11_BRANA (Squalene monooxygenase 1,1 OS=Brassica napus GN=SQP1,1 PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 4.118e-28
Identity = 62/137 (45.26%), Postives = 84/137 (61.31%), Query Frame = -1
Query:  374 DAPALGNYLESFYTLRKPVASTINTLAGALYQVFSASPDEARKEMRQACFDYLSLGGIFSSGPVSLLSGLNPRPLILVFHFFAVAIYGVGRILLPFPSPYRFWIGARIITSASGIIFPIMKAEGLRQMFFPATVPAY 784
            DA  +   ++SFY +RKP+++T+NTL  A  QV  AS DEA++ MRQ CFDYLS GG  +SG ++LL G+NPRPL L+FH   + +  +G++L PFPSP   W   R           +  AEG+ QM  PA   AY
Sbjct:  371 DANKVSEVIKSFYVIRKPMSATVNTLGNAFSQVLIASTDEAKEAMRQGCFDYLSSGGFRTSGMMALLGGMNPRPLSLIFHLCGITLSSIGQLLSPFPSPLGIWHSLR-----------LFGAEGVSQMLSPAYAAAY 496          
BLAST of CN182100 vs. ExPASy Swiss-Prot
Match: ERG13_ARATH (Squalene monooxygenase 2 OS=Arabidopsis thaliana GN=SQP2 PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.730e-26
Identity = 56/133 (42.11%), Postives = 84/133 (63.16%), Query Frame = -1
Query:  374 LGNYLESFYTLRKPVASTINTLAGALYQVFSASPDEARKEMRQACFDYLSLGGIFSSGPVSLLSGLNPRPLILVFHFFAVAIYGVGRILLPFPSPYRFWIGARIITSASGIIFPIMKAEGLRQMFFPATVPAY 772
            + + ++SFY +RKP+++T+NTLA    QV  A+ DEAR+ MRQ CF+YL+ G   + G +++L G+NP PL LV H  A+ +  +G +L PFPSP RFW   RI+  A  ++   +  EG ++M  P    AY
Sbjct:  374 VSDLVKSFYIIRKPMSATVNTLASIFSQVLVATTDEAREGMRQGCFNYLARGDFKTRGLMTILGGMNPHPLTLVLHLVAITLTSMGHLLSPFPSPRRFWHSLRILAWALQMLGAHLVDEGFKEMLIPTNAAAY 506          
BLAST of CN182100 vs. ExPASy Swiss-Prot
Match: ERG1_HUMAN (Squalene monooxygenase OS=Homo sapiens GN=SQLE PE=2 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 6.168e-16
Identity = 53/127 (41.73%), Postives = 74/127 (58.27%), Query Frame = -1
Query:  416 DAPALGNYLESFYTLRKPVAS-TINTLAGALYQVFSASPDEARKEMRQACFDYLSLGGIFSSGPVSLLSGLNPRPLILVFHFFAVAIYGVGRILLPFP---SPYRFWIGARIITSASGIIFPIMKAE 784
            D  A+    +SFY  RK   S  +N LA ALY++FSA+ D++  ++R+ACF Y  LGG   +GPV LLS L+P PL L+ HFFAVAIY V       P    P      + ++  A  +IFP++ +E
Sbjct:  443 DDAAIFEANKSFYWARKTSHSFVVNILAQALYELFSAT-DDSLHQLRKACFLYFKLGGECVAGPVGLLSVLSPNPLALIGHFFAVAIYAVYFCFKSEPWITKPRALLSSSAVLYKACSVIFPLIYSE 568          
BLAST of CN182100 vs. ExPASy Swiss-Prot
Match: ERG1_RAT (Squalene monooxygenase OS=Rattus norvegicus GN=Sqle PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.344e-15
Identity = 52/127 (40.94%), Postives = 73/127 (57.48%), Query Frame = -1
Query:  416 DAPALGNYLESFYTLRKPVAS-TINTLAGALYQVFSASPDEARKEMRQACFDYLSLGGIFSSGPVSLLSGLNPRPLILVFHFFAVAIYGVGRILLPFP---SPYRFWIGARIITSASGIIFPIMKAE 784
            D  A+    +SF+  RK   S  +N LA ALY++FSA+ D  R ++R+ACF Y  LGG   +GPV LLS L+P PL+L+ HFF+VA+Y         P    P   +    I+  A  IIFP++ +E
Sbjct:  442 DDAAIFQAKKSFFWSRKRSHSFVVNVLAQALYELFSATDDSLR-QLRKACFLYFKLGGECLTGPVGLLSILSPDPLLLIRHFFSVAVYATYFCFKSEPWATKPRALFSSGAILYKACSIIFPLIYSE 567          
BLAST of CN182100 vs. ExPASy Swiss-Prot
Match: ERG1_MOUSE (Squalene monooxygenase OS=Mus musculus GN=Sqle PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.344e-15
Identity = 50/127 (39.37%), Postives = 74/127 (58.27%), Query Frame = -1
Query:  416 DAPALGNYLESFYTLRKPVAS-TINTLAGALYQVFSASPDEARKEMRQACFDYLSLGGIFSSGPVSLLSGLNPRPLILVFHFFAVAIYGVGRILLPFP---SPYRFWIGARIITSASGIIFPIMKAE 784
            D  A+    +SF+  RK   S  +N LA ALY++FSA+ D++  ++R+ACF Y  LGG   +GPV LLS L+P PL+L+ HFF+VAIY         P    P   +    ++  A  I+FP++ +E
Sbjct:  441 DDAAIFQAKKSFFWSRKRTHSFVVNVLAQALYELFSAT-DDSLHQLRKACFLYFKLGGECVTGPVGLLSILSPHPLVLIRHFFSVAIYATYFCFKSEPWATKPRALFSSGAVLYKACSILFPLIYSE 566          
BLAST of CN182100 vs. ExPASy Swiss-Prot
Match: ERG1_CANAL (Squalene monooxygenase OS=Candida albicans GN=ERG1 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.053e-11
Identity = 41/102 (40.20%), Postives = 58/102 (56.86%), Query Frame = -1
Query:  494 DAPALGNYLESFYTLRKPVASTINTLAGALYQVFSASPDEARKEMRQACFDYLSLGGIFSSGPVSLLSGLNPRPLILVFHFFAVAIYGV-----GRILLPFP 784
            D   +   L++F+  RK + + INTL+ +LY +F+A     R  +R  CF Y   GG   +GP+ LLSG+ P P++L  HFF+VA Y V      R LL FP
Sbjct:  369 DHQLIAKRLKTFHRKRKNLDAVINTLSISLYSLFAADKKPLRI-LRNGCFKYFQRGGECVNGPIGLLSGMLPFPMLLFNHFFSVAFYSVYLNFIERGLLGFP 469          
The following BLAST results are available for this feature:
BLAST of CN182100 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
ERG1_PANGI9.089e-6078.32Squalene monooxygenase OS=Panax ginseng PE=2 SV=1[more]
ERG11_ARATH1.616e-3245.99Squalene monooxygenase 1,1 OS=Arabidopsis thaliana... [more]
ERG12_BRANA1.047e-3144.53Squalene monooxygenase 1,2 OS=Brassica napus GN=SQ... [more]
ERG12_ARATH2.333e-3145.65Squalene monooxygenase 1,2 OS=Arabidopsis thaliana... [more]
ERG11_BRANA4.118e-2845.26Squalene monooxygenase 1,1 OS=Brassica napus GN=SQ... [more]
ERG13_ARATH1.730e-2642.11Squalene monooxygenase 2 OS=Arabidopsis thaliana G... [more]
ERG1_HUMAN6.168e-1641.73Squalene monooxygenase OS=Homo sapiens GN=SQLE PE=... [more]
ERG1_RAT2.344e-1540.94Squalene monooxygenase OS=Rattus norvegicus GN=Sql... [more]
ERG1_MOUSE2.344e-1539.37Squalene monooxygenase OS=Mus musculus GN=Sqle PE=... [more]
ERG1_CANAL2.053e-1140.20Squalene monooxygenase OS=Candida albicans GN=ERG1... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001P07_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001P07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182100 ID=CN182100; Name=CN182100; organism=Citrus sinensis; type=EST; length=784bp
CTTTTAAAGGGTCCGCGGTCTTACATGACGCGAGATATTGAGCTTTCTTT
TCACATAAATCAAAACATTTGTAAGCCTTTTCTTGATTACAATAGCCTAA
GAATAATGTTTCAGAGAAAAAAAAATTATATACCATAATTTCAGGCTACT
GTTTATTAACATCCTAAAGAAACAAAAATCCATAAATACAAAACAAAACA
ACAAAAAAAATGTAGTACCGCACATCAATTCTTCTAGGCATTGGCCTCCC
TCAAGAATTGAACAAAGGGAGGCAGATACCAGTGCAGCCTAGCTTGTCTC
GACGGATGTTAATTCGTACTACTTCAATTTTCTGCAAACTCAGATTTCAG
TTACTAGGTGGAGCTTGGTAATAATATGCAGGAACAGTTGCAGGGAAGAA
CATTTGTCGCAACCCTTCTGCCTTCATAATAGGGAAGATGATTCCCGATG
CACTCGTAATTATTCTAGCTCCAATCCAGAAGCGATAAGGTGAAGGAAAT
GGCAGTAAAATTCGACCAACACCATATATTGCAACGGCAAAGAAATGGAA
AACCAAGATTAATGGACGGGGATTTAAGCCTGAGAGCAGAGAGACTGGTC
CTGACGAGAAGATACCTCCAAGACTTAGATAATCAAAGCAAGCCTGGCGC
ATTTCCTTCCTTGCTTCATCAGGAGATGCAGAAAATACCTGGTACAAGGC
ACCGGCCAAGGTATTGATGGTGGATGCCACTGGCTTACGCAAGGTGTAAA
AGGATTCAAGGTAATTGCCGAGAGCTGGTGCATC
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