CN182097

Overview
NameCN182097
Unique NameCN182097
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length718
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12798 contig Csv1_Contig12798:206..923. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN182097 vs. ExPASy Swiss-Prot
Match: PROSC_HUMAN (Proline synthetase co-transcribed bacterial homolog protein OS=Homo sapiens GN=PROSC PE=1 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 5.425e-53
Identity = 111/211 (52.61%), Postives = 148/211 (70.14%), Query Frame = -1
Query:  113 SKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAAQ-----LPDDLEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGR-KPLKVLVQVNTSGEESKSGVEPSGCLELVKHVSQNCPNLEFCGLMTIGM--PDYTSTPE-NFKTLAKCRSEVCKALGIPEEQCDLSMGMSGDFELAIEMGSTNVRIGSTIFGAREYPKK 718
            SKTKP  ++ + Y  G R FGENYVQE++EKA+      L  +++WHFIG+LQ   V  L+A VPNL M+E+VD+ K+A ++N   +  G  + LKV+VQ+NTSGEESK G+ PS  + +V+H++  CPNLEF GLMTIG    D +  P  +F+ L   R E+CK L IP +Q +LSMGMS DF+ A+E+GSTNVRIGSTIFG R+Y KK
Sbjct:   46 SKTKPADMVIEAYGHGQRTFGENYVQELLEKASNPKILSLCPEIKWHFIGHLQKQNVNKLMA-VPNLFMLETVDSVKLADKVNSSWQRKGSPERLKVMVQINTSGEESKHGLPPSETIAIVEHINAKCPNLEFVGLMTIGSFGHDLSQGPNPDFQLLLSLREELCKKLNIPADQVELSMGMSADFQHAVEVGSTNVRIGSTIFGERDYSKK 255          
BLAST of CN182097 vs. ExPASy Swiss-Prot
Match: PROSC_PONAB (Proline synthetase co-transcribed bacterial homolog protein OS=Pongo abelii GN=PROSC PE=2 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 1.578e-52
Identity = 111/211 (52.61%), Postives = 148/211 (70.14%), Query Frame = -1
Query:  113 SKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAAQ-----LPDDLEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGR-KPLKVLVQVNTSGEESKSGVEPSGCLELVKHVSQNCPNLEFCGLMTIGM--PDYTSTPE-NFKTLAKCRSEVCKALGIPEEQCDLSMGMSGDFELAIEMGSTNVRIGSTIFGAREYPKK 718
            SKTKP  ++ + Y  G R FGENYVQE++EKA+      L  +++WHFIG+LQ   V  L+A VPNL ++E+VD+ K+AG++N   +  G  + LKV+VQ+NTSGEESK G+ PS  + +V+H++  CPNLEF GLMTIG    D +  P  +F+ L   R E+CK L IP +Q +LSMGMS DF+ AIE+GSTNVRIGS IFG R+Y KK
Sbjct:   46 SKTKPADMVIEAYGHGQRTFGENYVQELLEKASNPKILSLGPEIKWHFIGHLQKQNVNKLMA-VPNLFVLETVDSVKLAGKVNSSWQKKGSPERLKVMVQINTSGEESKHGLPPSETIAIVEHINAKCPNLEFVGLMTIGSFGHDLSQGPNPDFQLLLSLREELCKKLNIPADQVELSMGMSVDFQHAIEVGSTNVRIGSMIFGERDYSKK 255          
BLAST of CN182097 vs. ExPASy Swiss-Prot
Match: PROSC_MOUSE (Proline synthetase co-transcribed bacterial homolog protein OS=Mus musculus GN=Prosc PE=1 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 1.578e-52
Identity = 111/211 (52.61%), Postives = 150/211 (71.09%), Query Frame = -1
Query:  113 SKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAAQLP-----DDLEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMG-RKPLKVLVQVNTSGEESKSGVEPSGCLELVKHVSQNCPNLEFCGLMTIGM--PDYTSTPE-NFKTLAKCRSEVCKALGIPEEQCDLSMGMSGDFELAIEMGSTNVRIGSTIFGAREYPKK 718
            SKTKP  ++ + Y  G R FGENYVQE++EKA+         +++WHFIG+LQ   V  L+A VPNL+M+E+VD+ K+A ++N   +  G  +PLKV+VQ+NTSGE+SK G+ PS  + +V+H+  +CP+LEF GLMTIG    D +  P  +F+ L   R E+C+ LGIP EQ +LSMGMS DF+ AIE+GSTNVRIGSTIFG R+Y KK
Sbjct:   46 SKTKPADMVIEAYGHGQRTFGENYVQELLEKASNPKILSSCPEIKWHFIGHLQKQNVNKLMA-VPNLSMLETVDSVKLADKVNSSWQKKGPTEPLKVMVQINTSGEDSKHGLLPSETIAVVEHIKASCPSLEFVGLMTIGSFGHDLSQGPNPDFQRLLTLRRELCEKLGIPVEQVELSMGMSMDFQHAIEVGSTNVRIGSTIFGERDYSKK 255          
BLAST of CN182097 vs. ExPASy Swiss-Prot
Match: PROSC_DICDI (Proline synthetase co-transcribed bacterial homolog protein OS=Dictyostelium discoideum GN=prosc PE=3 SV=2)

HSP 1 Score: 203.756 bits (517), Expect = 7.833e-52
Identity = 110/217 (50.69%), Postives = 145/217 (66.82%), Query Frame = -1
Query:  113 SKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAAQLPD--DLEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRL----------NRMVETMGRKPLKVLVQVNTSGEESKSGVEPSGCLELVKHVSQ--NCPN-LEFCGLMTIGMPDYTSTPENFKTLAKCRSEVCKALGIPEEQCDLSMGMSGDFELAIEMGSTNVRIGSTIFGAREYPKK 718
            SKTKP  +IR +Y+ GHR FGENY+QE+V K+ +L +  +++WHFIG++QSNK K +L  V NL +VE+V+N+KI  +L          N        K L +++QVNTSGEESKSG +P  CL+LVKH  +  NC N L F GLMTIG P+ T    +FK L  C++ + K L IP +  +LSMGMS DFE AIE GST+VR+GS IFG R+Y  K
Sbjct:   39 SKTKPTEMIRILYDKGHRHFGENYIQELVSKSEELSELNEIKWHFIGSIQSNKSK-ILTSVKNLYVVETVENKKILDKLAKSLLNNEENNNNNNNNNNKKLNIMIQVNTSGEESKSGCKPEECLDLVKHCLEDNNCKNSLNFLGLMTIGNPNATPDQPDFKCLVDCKNNISKQLNIPLDSIELSMGMSHDFEPAIEFGSTSVRVGSAIFGERDYSNK 254          
BLAST of CN182097 vs. ExPASy Swiss-Prot
Match: PROSC_BOVIN (Proline synthetase co-transcribed bacterial homolog protein OS=Bos taurus GN=PROSC PE=2 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 2.977e-51
Identity = 109/211 (51.66%), Postives = 146/211 (69.19%), Query Frame = -1
Query:  113 SKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAAQLP-----DDLEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGR-KPLKVLVQVNTSGEESKSGVEPSGCLELVKHVSQNCPNLEFCGLMTIGM--PDYTSTPE-NFKTLAKCRSEVCKALGIPEEQCDLSMGMSGDFELAIEMGSTNVRIGSTIFGAREYPKK 718
            SKTKP  ++ + Y  G R FGENYVQE++EKA+         +++WHFIG+LQ   V  L+A VPNL+M+E+VD+ K+A ++N   +  G  + LKV+VQ+NTSGE SK G+ P+    LV+H++  CP+LEF GLMTIG    D +  P  +F+ L   R E+C+ LG P EQ +LSMGMS DF+ AIE+GSTNVRIGSTIFG R+Y KK
Sbjct:   46 SKTKPADMVIEAYSHGQRTFGENYVQELLEKASNPQILSSCPEIKWHFIGHLQKQNVNKLMA-VPNLSMLETVDSVKLADKVNSAWQKKGSPERLKVMVQINTSGEASKHGLPPAEMAALVEHINAKCPSLEFVGLMTIGSFGHDLSQGPNPDFQVLLSLREELCRKLGAPPEQVELSMGMSVDFQHAIEVGSTNVRIGSTIFGERDYSKK 255          
BLAST of CN182097 vs. ExPASy Swiss-Prot
Match: YKC9_SCHPO (UPF0001 protein C644.09 OS=Schizosaccharomyces pombe GN=SPAC644.09 PE=2 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 5.266e-40
Identity = 97/204 (47.55%), Postives = 129/204 (63.24%), Query Frame = -1
Query:  116 SKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAAQLPDDLEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEPSGCLELVKHVSQNCPNLEFCGLMTIGMPDYTSTPE---NFKTLAKCRSEVCKALGIPEEQCDLSMGMSGDFELAIEMGSTNVRIGSTIFGAREYPK 718
            SK  PV  + + Y AG R FGENY+QE ++K   +PDD++WHFIG+LQS+K K  +A V NL  +E++D EK A  +N   E + + PL V +QVNTSGEE+K GV PS  LEL K V Q+   L   GLMTIG    +   +   +F+ L+  R  +   LGIP     LSMGMS D+ LAI+ GS +VR+GS+IFG+R   K
Sbjct:   30 SKFHPVETLMEAYNAGQRHFGENYMQEFLKKVELMPDDVQWHFIGSLQSSKCKK-IASVKNLYSIETIDTEKKARLVNSAREAL-QLPLNVYIQVNTSGEENKGGVTPSKVLELCKQV-QDMKYLRLKGLMTIGSISNSQLSDHNPDFQVLSDLRESLQNELGIP---LQLSMGMSSDYLLAIKYGSDSVRVGSSIFGSRPTEK 227          
BLAST of CN182097 vs. ExPASy Swiss-Prot
Match: Y112_PASMU (UPF0001 protein PM0112 OS=Pasteurella multocida GN=PM0112 PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 4.173e-37
Identity = 99/207 (47.83%), Postives = 128/207 (61.84%), Query Frame = -1
Query:  116 SKTKPVSVIRQVYEAGHRCFGENYVQEIVEKA---AQLPDDLEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEPSGCLELVKHVSQNCPNLEFCGLMTIGMP--DYTSTPENFKTLAKCRSEVCKALGIPEEQCD-LSMGMSGDFELAIEMGSTNVRIGSTIFGAREYPK 718
            SKTKPV  I Q Y+AG   FGENYVQE VEK    AQ    LEWHFIG LQSNK K +     +   ++++D +KIA RLN       +KPL VL+Q+N S E+SKSG++P+  L+L K + QN P+L   GLM I  P  D  +  + F  +     ++ +AL  P+ Q D LSMGM+ D   AI+ GST VRIG+ IFGAR+Y K
Sbjct:   34 SKTKPVEDIYQAYQAGQTAFGENYVQEGVEKIQYFAQKNIPLEWHFIGPLQSNKTKLV---AEHFDWMQTLDRKKIADRLNEQ-RPHYKKPLNVLIQINISDEDSKSGIQPNEMLDLAKQI-QNLPHLCLRGLMAIPAPTDDLATQEQAFTQMHSLFEQLKQAL--PDAQIDTLSMGMTDDMASAIQCGSTMVRIGTAIFGARDYSK 233          
BLAST of CN182097 vs. ExPASy Swiss-Prot
Match: PROSC_CAEEL (Proline synthetase co-transcribed bacterial homolog protein OS=Caenorhabditis elegans GN=F09E5.8 PE=2 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.071e-36
Identity = 93/210 (44.29%), Postives = 124/210 (59.05%), Query Frame = -1
Query:  113 SKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAAQLPD---DLEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRK--PLKVLVQVNTSGEESKSGVEPSGCLELVKHVSQNCPNLEFCGLMTIGMPDYT-STPEN--FKTLAKCRSEVCKALGIPEEQCDLSMGMSGDFELAIEMGSTNVRIGSTIFGAREYPKK 718
            SKTK   +I   Y    R FGENYVQE+ EK+  L     D+ WHFIG +QSNK+  +    P L  VE+V+ EK A   ++     G    PL+VLVQVNTSGE++K G+E     +L + + + C NL+F G MTIG  D + ++ EN  F+ L K R    +  G   +  +LSMGMS DF  AI  G+T+VR+GS +FGAREY  K
Sbjct:   36 SKTKSADLIEACYSQNQRHFGENYVQELEEKSDVLASKCLDIRWHFIGQVQSNKIGKI-CNSPGLWCVETVETEKHARIFDKEWSKHGANLSPLRVLVQVNTSGEDNKGGIEIGEAPKLAEFIRKECQNLKFDGFMTIGSFDNSHASGENPDFEKLFKVRQTWAEQTGESADSVELSMGMSDDFLQAIHQGATSVRVGSKLFGAREYKNK 244          
BLAST of CN182097 vs. ExPASy Swiss-Prot
Match: Y461_VIBCH (UPF0001 protein VC_0461 OS=Vibrio cholerae GN=VC_0461 PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 3.532e-36
Identity = 97/209 (46.41%), Postives = 126/209 (60.29%), Query Frame = -1
Query:  116 SKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAAQLPDD-----LEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEPSGCLELVKHVSQNCPNLEFCGLMTI--GMPDYTSTPENFKTLAKCRSEVCKALGIPEEQCD-LSMGMSGDFELAIEMGSTNVRIGSTIFGAREYPK 718
            SKTKPV  I +  +AG R FGENYVQE V+K     +      LEWHFIG LQSNK + +     +   V ++D EKIA RL+     +   PL+VL+QVNTSGE SKSG+EP     L + +S+  PNL   GLM+I   +PDY +    F  LA+ + ++ +       Q D LSMGMSGD + AIE GST VRIG+ IFG R+Y +
Sbjct:   35 SKTKPVEAILEATQAGQRYFGENYVQEGVDKIRYFAEHHPQLALEWHFIGPLQSNKTRLV---AEHFDWVHTIDREKIALRLSEQ-RPVNMPPLQVLIQVNTSGEASKSGIEPQQLFTLAELISR-LPNLTLRGLMSIPENVPDYPAQLAAFTQLAELQQQLAQKY----PQIDTLSMGMSGDMQAAIEAGSTIVRIGTAIFGERDYSR 234          
BLAST of CN182097 vs. ExPASy Swiss-Prot
Match: Y090_HAEIN (UPF0001 protein HI0090 OS=Haemophilus influenzae GN=HI0090 PE=1 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 4.614e-36
Identity = 96/205 (46.83%), Postives = 125/205 (60.98%), Query Frame = -1
Query:  122 SKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAAQLPD---DLEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEPSGCLELVKHVSQNCPNLEFCGLMTIGMP-DYTSTPEN-FKTLAKCRSEVCKALGIPEEQCD-LSMGMSGDFELAIEMGSTNVRIGSTIFGAREY 718
            SKTKP+S I   Y+AG   FGENYVQE VEK         +LEWHFIG LQSNK + +     +   ++++D  KIA RLN    T  + PL VL+Q+N S EESKSG++P   L L KH+ +N P+L   GLM I  P D  +  EN F+ + +   ++ + L  P +Q D LSMGM+ D   AI+ GST VRIG+ IFGAR Y
Sbjct:   34 SKTKPISAILSAYQAGQTAFGENYVQEGVEKIQYFESQGINLEWHFIGPLQSNKTRLV---AEHFDWMQTLDRAKIADRLNEQRPT-NKAPLNVLIQINISDEESKSGIQPEEMLTLAKHI-ENLPHLCLRGLMAIPAPTDNIAEQENAFRKMLELFEQLKQVL--PNQQIDTLSMGMTDDMPSAIKCGSTMVRIGTAIFGARNY 231          
The following BLAST results are available for this feature:
BLAST of CN182097 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29
Match NameE-valueIdentityDescription
PROSC_HUMAN5.425e-5352.61Proline synthetase co-transcribed bacterial homolo... [more]
PROSC_PONAB1.578e-5252.61Proline synthetase co-transcribed bacterial homolo... [more]
PROSC_MOUSE1.578e-5252.61Proline synthetase co-transcribed bacterial homolo... [more]
PROSC_DICDI7.833e-5250.69Proline synthetase co-transcribed bacterial homolo... [more]
PROSC_BOVIN2.977e-5151.66Proline synthetase co-transcribed bacterial homolo... [more]
YKC9_SCHPO5.266e-4047.55UPF0001 protein C644.09 OS=Schizosaccharomyces pom... [more]
Y112_PASMU4.173e-3747.83UPF0001 protein PM0112 OS=Pasteurella multocida GN... [more]
PROSC_CAEEL2.071e-3644.29Proline synthetase co-transcribed bacterial homolo... [more]
Y461_VIBCH3.532e-3646.41UPF0001 protein VC_0461 OS=Vibrio cholerae GN=VC_0... [more]
Y090_HAEIN4.614e-3646.83UPF0001 protein HI0090 OS=Haemophilus influenzae G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001P05_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001P05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182097 ID=CN182097; Name=CN182097; organism=Citrus sinensis; type=EST; length=718bp
GAGGTTTGCATAAAAAATATGATTAATCTACTATACTCTAGTTTCAGTAC
ATTAAGATAAATACATAACAATAGCCAACGTTTTCAGAACAGGTGAAAAA
AAAAGTTTAGTTCTTCTTCGGATATTCCCTTGCACCAAATATTGTGGATC
CAATCCTGACATTGGTGCTCCCCATTTCAATAGCAAGCTCGAAGTCACCA
GACATTCCCATAGACAGATCACATTGCTCTTCTGGTATTCCAAGAGCCTT
GCATACCTCACTTCTGCATTTTGCTAATGTCTTGAAGTTCTCCGGGGTCG
ATGTGTAATCTGGCATCCCAATTGTCATTAGGCCACAAAACTCAAGATTC
GGACAGTTTTGACTAACATGTTTCACAAGTTCCAGACACCCTGAAGGCTC
AACTCCAGATTTCGATTCTTCTCCACTGGTATTCACTTGAACCAAGACTT
TTAAAGGCTTCCTTCCCATGGTTTCAACCATACGATTAAGACGACCTGCA
ATCTTCTCGTTGTCCACACTTTCTACCATTGCCAGGTTAGGCACACCAGC
CAATAAAGGTTTCACTTTATTGCTCTGCAGGTTCCCAATGAAATGCCATT
CTAGATCATCTGGAAGCTGAGCCGCCTTTTCCACTATTTCTTGAACGTAG
TTTTCACCGAAACATCGGTGACCGGCCTCATAAACCTGACGGATTACTGA
GACCGGTTTGGTTTTGCT
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