CN188879

Overview
NameCN188879
Unique NameCN188879
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length696
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN188879_ssr50 microsatellite CN188879_ssr50:50..61. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2619 contig Csv1_Contig2619:1..696. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188879 vs. ExPASy Swiss-Prot
Match: ARGB_ACAM1 (Acetylglutamate kinase OS=Acaryochloris marina (strain MBIC 11017) GN=argB PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 4.673e-38
Identity = 84/143 (58.74%), Postives = 99/143 (69.23%), Query Frame = 2
Query:  266 AEFRVDILSESLPFIQKFRGKTIVVKYGGAAMKPNQKDNXXXXXXXXXXXXXXXXXRPVLVHGGGPEINFWLKRFGIEPVFRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARPSPNSAKLGF 694
            A  RV +LSE+LP+IQ F G+T+VVKYGGAAMK +                     RPVLVHGGGPEIN WL++ GIEP F  GLRVTDA TM++V MVLVGRVNK LVSLIN+AG +AVG+ G DG+L TARP   S  +GF
Sbjct:    4 ASDRVQVLSEALPYIQSFAGRTVVVKYGGAAMKDS---TLKATVIRDVVFMACVGLRPVLVHGGGPEINLWLEKLGIEPQFMKGLRVTDAPTMDVVEMVLVGRVNKELVSLINQAGGSAVGVCGKDGKLLTARPQGESG-IGF 142          
BLAST of CN188879 vs. ExPASy Swiss-Prot
Match: ARGB_MICAN (Acetylglutamate kinase OS=Microcystis aeruginosa (strain NIES-843) GN=argB PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 6.103e-38
Identity = 82/132 (62.12%), Postives = 97/132 (73.48%), Query Frame = 2
Query:  275 RVDILSESLPFIQKFRGKTIVVKYGGAAMKPNQ-KDNXXXXXXXXXXXXXXXXXRPVLVHGGGPEINFWLKRFGIEPVFRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARP 667
            RV ILSE+LP+IQ+FRG+T+VVKYGGAAM  +  KD                  RPV+VHGGGPEIN WL + GIEP F+DGLRVTDA+TM++V MVLVGRVNK +V+LIN+AG  AVGL G DG L TARP
Sbjct:   12 RVKILSEALPYIQEFRGRTVVVKYGGAAMNNSDIKDTVMRDIVFLSCVGV----RPVIVHGGGPEINSWLDKLGIEPQFKDGLRVTDADTMDVVEMVLVGRVNKEIVALINQAGGKAVGLCGKDGNLITARP 139          
BLAST of CN188879 vs. ExPASy Swiss-Prot
Match: ARGB_SYNY3 (Acetylglutamate kinase OS=Synechocystis sp. (strain PCC 6803) GN=argB PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.041e-37
Identity = 84/137 (61.31%), Postives = 96/137 (70.07%), Query Frame = 2
Query:  266 AEFRVDILSESLPFIQKFRGKTIVVKYGGAAMKPNQKDNXXXXXXXXXXXXXXXXXRPVLVHGGGPEINFWLKRFGIEPVFRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARPSPN 676
            A  RV ILSE+LP+IQ F G+T+VVKYGGAAMK +   N                 RPV+VHGGGPEIN WL + GIEP F+DGLRVTDA TM+IV MVLVGRVNK LV+LIN+AG  AVGL G DG+L TAR   N
Sbjct:   12 AATRVKILSEALPYIQHFAGRTVVVKYGGAAMKDS---NLKDKVIRDIVFMASVGIRPVVVHGGGPEINTWLDKVGIEPQFKDGLRVTDAATMDIVEMVLVGRVNKELVNLINQAGGKAVGLCGKDGQLMTARTMTN 145          
BLAST of CN188879 vs. ExPASy Swiss-Prot
Match: ARGB_NOSP7 (Acetylglutamate kinase OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=argB PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 3.956e-37
Identity = 80/132 (60.61%), Postives = 97/132 (73.48%), Query Frame = 2
Query:  275 RVDILSESLPFIQKFRGKTIVVKYGGAAMKPNQ-KDNXXXXXXXXXXXXXXXXXRPVLVHGGGPEINFWLKRFGIEPVFRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARP 667
            RV +LSE+LP+IQ+F G+T+VVKYGGAAMK +  KD                  RP++VHGGGPEIN WL + GIEP F++GLRVTDA TM++V MVLVGRVNK +V+LIN+AG  AVGL G DG LFTARP
Sbjct:   16 RVRVLSEALPYIQQFAGRTVVVKYGGAAMKDSTLKDKVIRDIVFLSCVGL----RPIVVHGGGPEINSWLDKLGIEPQFKNGLRVTDAATMDVVEMVLVGRVNKEIVALINQAGGLAVGLCGKDGNLFTARP 143          
BLAST of CN188879 vs. ExPASy Swiss-Prot
Match: ARGB_TRIEI (Acetylglutamate kinase OS=Trichodesmium erythraeum (strain IMS101) GN=argB PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 8.812e-37
Identity = 81/141 (57.45%), Postives = 98/141 (69.50%), Query Frame = 2
Query:  248 TDTQTPAEF-RVDILSESLPFIQKFRGKTIVVKYGGAAMKPNQKDNXXXXXXXXXXXXXXXXXRPVLVHGGGPEINFWLKRFGIEPVFRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARP 667
            TD +  +E  RV +LSE+LP+IQKF G+ IVVKYGGAAM+ +   N                 RP++VHGGGPEIN WL + GIEP F+DGLRVTDA+TME+V MVLVG+VNK +VSLIN+AG  AVGL G D  L  ARP
Sbjct:    5 TDLKNESEMSRVKVLSEALPYIQKFTGRKIVVKYGGAAMRDS---NVKDQVMRDIVLLSCVGIRPIVVHGGGPEINSWLGKLGIEPQFKDGLRVTDASTMEVVEMVLVGKVNKEIVSLINQAGGCAVGLCGKDASLIQARP 142          
BLAST of CN188879 vs. ExPASy Swiss-Prot
Match: ARGB_ANAVT (Acetylglutamate kinase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=argB PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.503e-36
Identity = 80/132 (60.61%), Postives = 95/132 (71.97%), Query Frame = 2
Query:  275 RVDILSESLPFIQKFRGKTIVVKYGGAAMKPNQ-KDNXXXXXXXXXXXXXXXXXRPVLVHGGGPEINFWLKRFGIEPVFRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARP 667
            RV +LSE+LP+IQ+F G+T+VVKYGGAAMK +  KD                  RP+LVHGGGPEIN WL + GIE  F++GLRVTDA TM++V MVLVGRVNK +VSLIN+AG  AVGL G DG L TARP
Sbjct:   16 RVQVLSEALPYIQQFAGRTVVVKYGGAAMKDSHLKDQVIRDIVFLSCVGL----RPILVHGGGPEINSWLDKLGIEAQFKNGLRVTDAPTMDVVEMVLVGRVNKEIVSLINQAGGLAVGLCGKDGNLITARP 143          
BLAST of CN188879 vs. ExPASy Swiss-Prot
Match: ARGB_ANASP (Acetylglutamate kinase OS=Anabaena sp. (strain PCC 7120) GN=argB PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.503e-36
Identity = 80/132 (60.61%), Postives = 95/132 (71.97%), Query Frame = 2
Query:  275 RVDILSESLPFIQKFRGKTIVVKYGGAAMKPNQ-KDNXXXXXXXXXXXXXXXXXRPVLVHGGGPEINFWLKRFGIEPVFRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARP 667
            RV +LSE+LP+IQ+F G+T+VVKYGGAAMK +  KD                  RP+LVHGGGPEIN WL + GIE  F++GLRVTDA TM++V MVLVGRVNK +VSLIN+AG  AVGL G DG L TARP
Sbjct:   16 RVQVLSEALPYIQQFAGRTVVVKYGGAAMKDSHLKDQVIRDIVFLSCVGL----RPILVHGGGPEINSWLDKLGIEAQFKNGLRVTDAPTMDVVEMVLVGRVNKEIVSLINQAGGLAVGLCGKDGNLITARP 143          
BLAST of CN188879 vs. ExPASy Swiss-Prot
Match: ARGB_SYNP6 (Acetylglutamate kinase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=argB PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.662e-35
Identity = 78/131 (59.54%), Postives = 91/131 (69.47%), Query Frame = 2
Query:  275 RVDILSESLPFIQKFRGKTIVVKYGGAAMKPNQKDNXXXXXXXXXXXXXXXXXRPVLVHGGGPEINFWLKRFGIEPVFRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARP 667
            RV ILSE+LP++Q+F G+T+VVKYGGAAMK   ++                  RPV+VHGGGPEIN WL R GIEP F +GLRVTDA+TME+V MVLVGRVNK +VS IN  G  AVG  G DGRL  ARP
Sbjct:   13 RVRILSEALPYLQQFAGRTVVVKYGGAAMK---QEELKEAVMRDIVFLACVGMRPVVVHGGGPEINAWLGRVGIEPQFHNGLRVTDADTMEVVEMVLVGRVNKDIVSRINTTGGRAVGFCGTDGRLVLARP 140          
BLAST of CN188879 vs. ExPASy Swiss-Prot
Match: ARGB_SYNE7 (Acetylglutamate kinase OS=Synechococcus elongatus (strain PCC 7942) GN=argB PE=1 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.662e-35
Identity = 78/131 (59.54%), Postives = 91/131 (69.47%), Query Frame = 2
Query:  275 RVDILSESLPFIQKFRGKTIVVKYGGAAMKPNQKDNXXXXXXXXXXXXXXXXXRPVLVHGGGPEINFWLKRFGIEPVFRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARP 667
            RV ILSE+LP++Q+F G+T+VVKYGGAAMK   ++                  RPV+VHGGGPEIN WL R GIEP F +GLRVTDA+TME+V MVLVGRVNK +VS IN  G  AVG  G DGRL  ARP
Sbjct:   13 RVRILSEALPYLQQFAGRTVVVKYGGAAMK---QEELKEAVMRDIVFLACVGMRPVVVHGGGPEINAWLGRVGIEPQFHNGLRVTDADTMEVVEMVLVGRVNKDIVSRINTTGGRAVGFCGTDGRLVLARP 140          
BLAST of CN188879 vs. ExPASy Swiss-Prot
Match: ARGB_PROMA (Acetylglutamate kinase OS=Prochlorococcus marinus GN=argB PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.077e-34
Identity = 72/131 (54.96%), Postives = 94/131 (71.76%), Query Frame = 2
Query:  275 RVDILSESLPFIQKFRGKTIVVKYGGAAMKPNQKDNXXXXXXXXXXXXXXXXXRPVLVHGGGPEINFWLKRFGIEPVFRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARP 667
            RV +LSE+LP+IQKF G+ IV+KYGG+AM    K++                 +PV++HGGGPEIN WL +  I+  FRDGLR+TD+NTM+IV MVL+GRVNK +V+ INK GA+AVGL G+DG+L  ARP
Sbjct:   25 RVSVLSEALPYIQKFAGRRIVIKYGGSAMS---KESLKEAVFRDIALLSSVGAQPVIIHGGGPEINHWLTKLEIKSEFRDGLRITDSNTMDIVEMVLIGRVNKQIVNGINKVGASAVGLCGIDGKLIEARP 152          
The following BLAST results are available for this feature:
BLAST of CN188879 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 422
Match NameE-valueIdentityDescription
ARGB_ACAM14.673e-3858.74Acetylglutamate kinase OS=Acaryochloris marina (st... [more]
ARGB_MICAN6.103e-3862.12Acetylglutamate kinase OS=Microcystis aeruginosa (... [more]
ARGB_SYNY31.041e-3761.31Acetylglutamate kinase OS=Synechocystis sp. (strai... [more]
ARGB_NOSP73.956e-3760.61Acetylglutamate kinase OS=Nostoc punctiforme (stra... [more]
ARGB_TRIEI8.812e-3757.45Acetylglutamate kinase OS=Trichodesmium erythraeum... [more]
ARGB_ANAVT1.503e-3660.61Acetylglutamate kinase OS=Anabaena variabilis (str... [more]
ARGB_ANASP1.503e-3660.61Acetylglutamate kinase OS=Anabaena sp. (strain PCC... [more]
ARGB_SYNP61.662e-3559.54Acetylglutamate kinase OS=Synechococcus sp. (strai... [more]
ARGB_SYNE71.662e-3559.54Acetylglutamate kinase OS=Synechococcus elongatus ... [more]
ARGB_PROMA1.077e-3454.96Acetylglutamate kinase OS=Prochlorococcus marinus ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006P04_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006P04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188879 ID=CN188879; Name=CN188879; organism=Citrus sinensis; type=EST; length=696bp
CATTAATCTCTCTGATCTCTGAACCCAAGCAATATCTGCGGAGAATATGG
CCGCCGCCGCCGCTGCCTCCCTAGAAATTGCTCCTTTTTTACAGTCACAG
CTTTCATTCTCATCAAAGTCAAAAGCAGGCTCTCAGTCTCCCTCCGTCTT
CAAAATCAAAACCCCACATGTCGAGAATTTCGCTTCGAACCACCGCACCG
AAATAACAAAATCATCCCGCTCTCTCACATCAGCAGCAACAGCCGTAACT
GACACACAGACCCCAGCCGAGTTCCGTGTCGACATTCTTTCCGAATCTCT
TCCCTTCATTCAGAAATTCCGCGGAAAGACCATCGTCGTCAAATACGGCG
GCGCCGCCATGAAACCCAACCAAAAGGACAACCTCCTCGCCTCCGTCGTA
AAAGACCTCGTTCTCCTGTCCGTTGTGGGACTCCGTCCTGTCTTGGTCCA
CGGCGGCGGTCCTGAGATCAATTTCTGGCTCAAACGTTTCGGAATCGAGC
CCGTTTTCCGTGACGGCCTCCGCGTCACTGATGCCAACACTATGGAGATC
GTGTCCATGGTTCTGGTGGGGAGGGTGAACAAGAGCTTGGTTTCTCTCAT
CAACAAAGCCGGCGCCACCGCGGTTGGGCTCTCGGGCATGGACGGGCGCC
TCTTCACGGCCCGGCCCAGCCCAAACTCCGCTAAACTGGGTTTCGT
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