CN182084

Overview
NameCN182084
Unique NameCN182084
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length541
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1505 contig Csv1_Contig1505:528..1068. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN182084 vs. ExPASy Swiss-Prot
Match: FOLD_TREDE (Bifunctional protein folD OS=Treponema denticola GN=folD PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.001e-27
Identity = 67/132 (50.76%), Postives = 84/132 (63.64%), Query Frame = -2
Query:  151 KGKRAVVVGRSNIVGLPVSLLLLKAD--ATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTKKSGYRLVGDVDFHEACKXXXXXXXXXXXXXXXXXXMLLRNTLDGAKR 540
            KG + V+VGRSNIVG P+S+L++  D  ATVT+ HS T +   + +EADI++AA G+   IK   IK GA VIDVG N +DDSTKKSG+RLVGDVDF  AC+                  ML+ NTL  AKR
Sbjct:  157 KGAKVVIVGRSNIVGKPLSVLMMNKDVNATVTVCHSGTKNLTEVTKEADILVAAMGKPRFIKADMIKKGAVVIDVGVNRIDDSTKKSGFRLVGDVDFEPACEIASAITPVPKGVGPMTIAMLVANTLIAAKR 288          
BLAST of CN182084 vs. ExPASy Swiss-Prot
Match: C1TC_SCHPO (C-1-tetrahydrofolate synthase, cytoplasmic OS=Schizosaccharomyces pombe GN=SPBC839.16 PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 4.966e-27
Identity = 64/130 (49.23%), Postives = 81/130 (62.31%), Query Frame = -2
Query:  151 KGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTKKSGYRLVGDVDFHEACKXXXXXXXXXXXXXXXXXXMLLRNTLDGAKR 540
            +GK AVV+GRSNIVG P+S+LL KA+ATVT+ HS T     IVR ADIV+AA G    +K  W+K G   IDVG N++ D+TKKSGYRL GD+DF  A +                  MLL+N ++ A R
Sbjct:  160 QGKHAVVIGRSNIVGRPMSILLEKANATVTLCHSKTESIADIVRTADIVVAAIGIPHFVKADWLKKGVVAIDVGINSIPDATKKSGYRLTGDIDFENAKEVASAITPVPGSVGPMTVAMLLQNVVESAVR 289          
BLAST of CN182084 vs. ExPASy Swiss-Prot
Match: C1TC_SPOFR (C-1-tetrahydrofolate synthase, cytoplasmic OS=Spodoptera frugiperda PE=2 SV=3)

HSP 1 Score: 117.472 bits (293), Expect = 4.204e-26
Identity = 63/132 (47.73%), Postives = 80/132 (60.61%), Query Frame = -2
Query:  142 GKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTKKSGYRLVGDVDFHEACKXXXXXXXXXXXXXXXXXXMLLRNTLDGAKRVIE 537
            GK  VV+GRS IVG PVS LL    ATVT+ HS T +   I + ADI++ A G+  M++GSWIKPGA VID G N + D TKKSG RLVGDV + EA +                  ML+RNT+  A+R ++
Sbjct:  163 GKNVVVLGRSRIVGTPVSELLKWEHATVTVCHSKTKNLSEITKTADILVVAIGRGEMVRGSWIKPGAVVIDCGINPISDPTKKSGQRLVGDVAYEEAVQVASHVTPVPGGVGPMTVAMLMRNTVQAARRQLD 294          
BLAST of CN182084 vs. ExPASy Swiss-Prot
Match: FOLD_PHEZH (Bifunctional protein folD OS=Phenylobacterium zucineum (strain HLK1) GN=folD PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 5.490e-26
Identity = 68/134 (50.75%), Postives = 84/134 (62.69%), Query Frame = -2
Query:  148 GKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAV--DDSTK--KSGYRLVGDVDFHEACKXXXXXXXXXXXXXXXXXXMLLRNTLDGAKRV 537
            GKRAVVVGRS +VG PV+ LLL+AD TVTI HS T D  ++ READI++AA G+  MI+G WIKPGA VIDVG N V  DD  K  +   +LVGDV + EA +                   LL+NT+  AKR+
Sbjct:  159 GKRAVVVGRSLLVGKPVAQLLLQADCTVTIAHSRTVDLPAVCREADILVAAVGRPRMIRGDWIKPGATVIDVGINRVPFDDPEKAAQGKTKLVGDVHYKEALQVAGAVTPVPGGVGLMTVACLLQNTVTAAKRL 292          
BLAST of CN182084 vs. ExPASy Swiss-Prot
Match: FOLD_MAGSA (Bifunctional protein folD OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=folD PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 9.365e-26
Identity = 69/135 (51.11%), Postives = 80/135 (59.26%), Query Frame = -2
Query:  139 GKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVD--DSTKKSGYRLVGDVDFHEACKXXXXXXXXXXXXXXXXXXMLLRNTLDGAKRVIEL 537
            G  AVV+GRSNIVG P++ LL+K   TVT+ HS T D   +VR ADIVIAA G+  MIKG WIKPGA VIDVG N ++  D TKK    LVGDVDF  A K                   LLRNTL    R+ +L
Sbjct:  160 GLDAVVIGRSNIVGKPMAQLLIKESCTVTVAHSQTKDLPGVVRRADIVIAAVGRPEMIKGDWIKPGATVIDVGINRIELPDGTKK----LVGDVDFASAVKVAGAITPVPGGVGPMTIACLLRNTLVACARLHKL 290          
BLAST of CN182084 vs. ExPASy Swiss-Prot
Match: C1TC_DROME (C-1-tetrahydrofolate synthase, cytoplasmic OS=Drosophila melanogaster GN=pug PE=1 SV=4)

HSP 1 Score: 116.316 bits (290), Expect = 9.365e-26
Identity = 64/132 (48.48%), Postives = 81/132 (61.36%), Query Frame = -2
Query:  142 GKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTKKSGYRLVGDVDFHEACKXXXXXXXXXXXXXXXXXXMLLRNTLDGAKRVIE 537
            G RAVV+GRS IVG P + LL  A+ATVT+ HS T + E I R ADI++   G A M+KGSWIKPGA VID G N   D++K SG +LVGDVD+ EA +                  ML++NT+  A R +E
Sbjct:  198 GARAVVLGRSKIVGTPAAELLKWANATVTVCHSKTRNLEEITRSADILVVGIGVAEMVKGSWIKPGAVVIDCGINVKPDASKASGSKLVGDVDYAEALQVAGHLTPVPGGVGPMTVAMLMKNTVRSAARFLE 329          
BLAST of CN182084 vs. ExPASy Swiss-Prot
Match: FOLD_ZYMMO (Bifunctional protein folD OS=Zymomonas mobilis GN=folD PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.597e-25
Identity = 64/135 (47.41%), Postives = 82/135 (60.74%), Query Frame = -2
Query:  148 KGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAV---DDSTKKSG-YRLVGDVDFHEACKXXXXXXXXXXXXXXXXXXMLLRNTLDGAKRV 540
            KGK A+V+GRS IVG P++ LLL AD TVT+ H HT + E + R+ADIV+AA G    +K SW+KPGA VIDVG N V   D++ K +G  R+VGDVDF EA K                   LL NT+  A+ +
Sbjct:  159 KGKNALVIGRSTIVGRPMAQLLLAADCTVTVAHRHTKNLEELCRQADIVVAAVGIPHFVKASWLKPGAVVIDVGINRVPAEDEAAKAAGKTRIVGDVDFVEAAKVASAITPVPGGVGPMTIACLLNNTVQAARNL 293          
BLAST of CN182084 vs. ExPASy Swiss-Prot
Match: FOLD_MAGSM (Bifunctional protein folD OS=Magnetococcus sp. (strain MC-1) GN=folD PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.597e-25
Identity = 66/130 (50.77%), Postives = 80/130 (61.54%), Query Frame = -2
Query:  151 KGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTKKSGYRLVGDVDFHEACKXXXXXXXXXXXXXXXXXXMLLRNTLDGAKR 540
            KGK AVV+GRSNIVG PV+L+LL A ATVTI HS T D    V+ ADIV+AA G+A M+ GSWIK GA VIDVG N  +D       +L GDVD+    +                  MLL+NT++GAKR
Sbjct:  157 KGKHAVVIGRSNIVGKPVALMLLAAHATVTICHSRTPDLAETVKRADIVVAAVGRANMVPGSWIKKGAVVIDVGINRGEDG------KLCGDVDYASCFEHASAITPVPGGVGPMTIAMLLKNTVEGAKR 280          
BLAST of CN182084 vs. ExPASy Swiss-Prot
Match: C1TC_YEAST (C-1-tetrahydrofolate synthase, cytoplasmic OS=Saccharomyces cerevisiae GN=ADE3 PE=1 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 3.559e-25
Identity = 66/146 (45.21%), Postives = 87/146 (59.59%), Query Frame = -2
Query:  127 KGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKP--------GAAVIDVGTNAVDDSTKKSGYRLVGDVDFHEACKXXXXXXXXXXXXXXXXXXMLLRNTLDGAKRVIEL*NRP 540
            +G R+VV+GRS+IVG PV+ LL   ++TVTI HS T D  S + +ADIV+ A GQ   +KG W KP           VIDVGTN V D +KKSG++ VGDV+F+EA K                  ML++NTL  AKR +E  ++P
Sbjct:  161 EGSRSVVIGRSDIVGSPVAELLKSLNSTVTITHSKTRDIASYLHDADIVVVAIGQPEFVKGEWFKPRDGTSSDKKTVVIDVGTNYVADPSKKSGFKCVGDVEFNEAIKYVHLITPVPGGVGPMTVAMLMQNTLIAAKRQMEESSKP 306          
BLAST of CN182084 vs. ExPASy Swiss-Prot
Match: FOLD_PARL1 (Bifunctional protein folD OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) GN=folD PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 7.928e-25
Identity = 64/130 (49.23%), Postives = 79/130 (60.77%), Query Frame = -2
Query:  151 GKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTKKSG-YRLVGDVDFHEACKXXXXXXXXXXXXXXXXXXMLLRNTLDGAKR 537
            GK AV++GRSN+VG PV+ LLLK + TVTI HS + D  SI R+ADI++AA G+  M++G W+KPGA VIDVG N V    K  G  RLVGDV F EA +                   LLRNT+  A R
Sbjct:  159 GKHAVIIGRSNLVGKPVAQLLLKENCTVTIAHSRSRDLPSIARQADILVAAVGRPGMVRGDWVKPGAVVIDVGINRVPAPEKGEGKTRLVGDVLFDEAAEVAGAITPVPGGVGLMTVACLLRNTVIAACR 288          
The following BLAST results are available for this feature:
BLAST of CN182084 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
FOLD_TREDE1.001e-2750.76Bifunctional protein folD OS=Treponema denticola G... [more]
C1TC_SCHPO4.966e-2749.23C-1-tetrahydrofolate synthase, cytoplasmic OS=Schi... [more]
C1TC_SPOFR4.204e-2647.73C-1-tetrahydrofolate synthase, cytoplasmic OS=Spod... [more]
FOLD_PHEZH5.490e-2650.75Bifunctional protein folD OS=Phenylobacterium zuci... [more]
FOLD_MAGSA9.365e-2651.11Bifunctional protein folD OS=Magnetospirillum magn... [more]
C1TC_DROME9.365e-2648.48C-1-tetrahydrofolate synthase, cytoplasmic OS=Dros... [more]
FOLD_ZYMMO1.597e-2547.41Bifunctional protein folD OS=Zymomonas mobilis GN=... [more]
FOLD_MAGSM1.597e-2550.77Bifunctional protein folD OS=Magnetococcus sp. (st... [more]
C1TC_YEAST3.559e-2545.21C-1-tetrahydrofolate synthase, cytoplasmic OS=Sacc... [more]
FOLD_PARL17.928e-2549.23Bifunctional protein folD OS=Parvibaculum lavament... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001O22_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001O22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182084 ID=CN182084; Name=CN182084; organism=Citrus sinensis; type=EST; length=541bp
AAACTCATGAACCATCTTCACATGTATTATAAATTATTAACCATGATAAA
TAAAAATGTTTTCAAACAAAACCAAAGGAGAATGAGTACCGTCTCATGAA
TTACAATGAAGTCAAGAACAAAGACGAGGGCGGTTTTACAGCTCGATCAC
ACGCTTTGCACCATCCAAGGTATTCCTGAGTAGCATAGCAACAGTCATTG
GGCCCACACCACCTGGAACAGGAGTTACACATCCAGCTACTTTACACGCT
TCATGGAAATCCACATCTCCCACTAACCTATAGCCTGACTTCTTGGTCGA
GTCATCGACAGCATTTGTTCCAACATCAATAACAGCGGCACCAGGCTTGA
TCCAACTTCCCTTGATCATCATTGCTTGGCCGGCTGCAGCAATAACAATG
TCAGCTTCACGAACGATACTTTCAGGATCAGTGGTATGTGAATGGACTAT
GGTTACAGTGGCATCAGCTTTCAGCAGCAGCAATGAAACTGGGAGTCCAA
CAATGTTACTTCGACCCACCACAACAGCCCTTTTACCCTTT
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