CN182056

Overview
NameCN182056
Unique NameCN182056
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length530
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13070 contig Csv1_Contig13070:5..534. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN182056 vs. ExPASy Swiss-Prot
Match: GAST1_SOLLC (Protein GAST1 OS=Solanum lycopersicum GN=GAST1 PE=2 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 1.933e-36
Identity = 65/94 (69.15%), Postives = 72/94 (76.60%), Query Frame = 3
Query:  117 QNQAAGTGIAAS-QLQAQGNRPARGTTQGSLNHQECAPKCHYRCSATSYKKPCLFFCQKCCAKCLCVPAGTYGNKQTCPCYNNWNTKRGGPKCP 395
            QNQ +   I    Q Q Q N    G ++G L+ Q+C PKC YRCS TSYKKPC+FFCQKCCAKCLCVPAGTYGNKQ+CPCYNNW TKRGGPKCP
Sbjct:   19 QNQVSRANIMRDEQQQQQRNNQLYGVSEGRLHPQDCQPKCTYRCSKTSYKKPCMFFCQKCCAKCLCVPAGTYGNKQSCPCYNNWKTKRGGPKCP 112          
BLAST of CN182056 vs. ExPASy Swiss-Prot
Match: RSI1_SOLLC (Protein RSI-1 OS=Solanum lycopersicum GN=RSI-1 PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 7.363e-28
Identity = 47/64 (73.44%), Postives = 53/64 (82.81%), Query Frame = 3
Query:  204 LNHQECAPKCHYRCSATSYKKPCLFFCQKCCAKCLCVPAGTYGNKQTCPCYNNWNTKRGGPKCP 395
            L   +C P+C YRCSATS+KKPC+FFCQKCCA CLCVP G YGNKQ+CPCYNNW T+ G PKCP
Sbjct:   33 LRPTDCKPRCTYRCSATSHKKPCMFFCQKCCATCLCVPKGVYGNKQSCPCYNNWKTQEGKPKCP 96          
BLAST of CN182056 vs. ExPASy Swiss-Prot
Match: GASA4_ARATH (Gibberellin-regulated protein 4 OS=Arabidopsis thaliana GN=GASA4 PE=1 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 5.461e-23
Identity = 41/66 (62.12%), Postives = 45/66 (68.18%), Query Frame = 3
Query:  198 GSLNHQECAPKCHYRCSATSYKKPCLFFCQKCCAKCLCVPAGTYGNKQTCPCYNNWNTKRGGPKCP 395
            GSL   +C  +C  RC  T Y K C+ FC KCC KCLCVP G YGNKQ C CYNNW T+ GGPKCP
Sbjct:   41 GSLKRTQCPSECDRRCKKTQYHKACITFCNKCCRKCLCVPPGYYGNKQVCSCYNNWKTQEGGPKCP 106          
BLAST of CN182056 vs. ExPASy Swiss-Prot
Match: SNAK1_SOLTU (Snakin-1 OS=Solanum tuberosum GN=SN1 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.300e-13
Identity = 29/59 (49.15%), Postives = 34/59 (57.63%), Query Frame = 3
Query:  219 CAPKCHYRCSATSYKKPCLFFCQKCCAKCLCVPAGTYGNKQTCPCYNNWNTKRGGPKCP 395
            C  KC  RCS       CL +C  CC +C CVP+GTYGNK  CPCY +    +G  KCP
Sbjct:   30 CDSKCKLRCSKAGLADRCLKYCGICCEECKCVPSGTYGNKHECPCYRDKKNSKGKSKCP 88          
BLAST of CN182056 vs. ExPASy Swiss-Prot
Match: GASA2_ARATH (Gibberellin-regulated protein 2 OS=Arabidopsis thaliana GN=GASA2 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 5.664e-12
Identity = 29/60 (48.33%), Postives = 35/60 (58.33%), Query Frame = 3
Query:  216 ECAPKCHYRCSATSYKKPCLFFCQKCCAKCLCVPAGTYGNKQTCPCYNNWNTKRGGPKCP 395
            +C  +C  RCS +S  K CL  C  CC++C CVP GT GN   CPCY +  T  G  KCP
Sbjct:   40 DCGGRCKDRCSKSSRTKLCLRACNSCCSRCNCVPPGTSGNTHLCPCYASITTHGGRLKCP 99          
BLAST of CN182056 vs. ExPASy Swiss-Prot
Match: GASA3_ARATH (Gibberellin-regulated protein 3 OS=Arabidopsis thaliana GN=GASA3 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.152e-11
Identity = 28/60 (46.67%), Postives = 34/60 (56.67%), Query Frame = 3
Query:  216 ECAPKCHYRCSATSYKKPCLFFCQKCCAKCLCVPAGTYGNKQTCPCYNNWNTKRGGPKCP 395
            +C  +C  RCS +S    CL  C  CC +C CVP GT GN   CPCY +  T+ G  KCP
Sbjct:   40 DCGGRCKGRCSKSSRPNLCLRACNSCCYRCNCVPPGTAGNHHLCPCYASITTRGGRLKCP 99          
The following BLAST results are available for this feature:
BLAST of CN182056 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
GAST1_SOLLC1.933e-3669.15Protein GAST1 OS=Solanum lycopersicum GN=GAST1 PE=... [more]
RSI1_SOLLC7.363e-2873.44Protein RSI-1 OS=Solanum lycopersicum GN=RSI-1 PE=... [more]
GASA4_ARATH5.461e-2362.12Gibberellin-regulated protein 4 OS=Arabidopsis tha... [more]
SNAK1_SOLTU2.300e-1349.15Snakin-1 OS=Solanum tuberosum GN=SN1 PE=1 SV=1[more]
GASA2_ARATH5.664e-1248.33Gibberellin-regulated protein 2 OS=Arabidopsis tha... [more]
GASA3_ARATH2.152e-1146.67Gibberellin-regulated protein 3 OS=Arabidopsis tha... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_0001O06_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001O06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182056 ID=CN182056; Name=CN182056; organism=Citrus sinensis; type=EST; length=530bp
GAGGCTCAAATCCACTTCAAGCTCTTATTGTTGTGTTGTTTCTTCTCCAA
AGAATAATGGCCAGAATGCTGAGACTTGTTGTGTTATTTGTGGCATTGAT
GCTTGTTTTAGTGGCACAAAACCAGGCTGCGGGCACAGGAATTGCAGCGT
CTCAGCTACAGGCACAAGGCAACCGCCCTGCGCGCGGTACCACCCAAGGG
AGCCTTAATCATCAAGAATGTGCTCCAAAATGCCATTATAGATGCTCAGC
AACTTCATACAAGAAGCCGTGCCTGTTTTTCTGCCAAAAATGTTGTGCAA
AGTGCTTATGTGTGCCGGCAGGCACATATGGGAACAAGCAAACGTGCCCT
TGCTACAATAACTGGAACACAAAGCGAGGAGGACCAAAATGCCCTTGAAT
TAATGGTATCAGTTTATAGTAATAAAATTTTCTATCGACACTAATCAGTT
ATATATTTCCTATAATGCTTATTTTGCTATTGTAGCCAATCTTTCTTGTA
CTCGTTTAGCAAGCATAAGTAATGTATTTT
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