CN182048

Overview
NameCN182048
Unique NameCN182048
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length503
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12817 contig Csv1_Contig12817:3..505. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN182048 vs. ExPASy Swiss-Prot
Match: DXS_ORYSJ (Probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic OS=Oryza sativa subsp. japonica GN=CLA1 PE=2 SV=2)

HSP 1 Score: 115.161 bits (287), Expect = 1.773e-25
Identity = 52/75 (69.33%), Postives = 66/75 (88.00%), Query Frame = 1
Query:  277 DFSEEKPPTPLLDTINYPIHMKNLSKEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKI 501
            ++  ++PPTPLLDT+NYPIHMKNLS ++L+QLA ELR+D++  VSKTGGHL ++LGVVELT+ALH VFNTP DKI
Sbjct:   62 EYHSQRPPTPLLDTVNYPIHMKNLSLKELQQLADELRSDVIFHVSKTGGHLGSSLGVVELTVALHYVFNTPQDKI 136          
BLAST of CN182048 vs. ExPASy Swiss-Prot
Match: DXS_ARATH (Probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic OS=Arabidopsis thaliana GN=CLA1 PE=1 SV=2)

HSP 1 Score: 115.161 bits (287), Expect = 1.773e-25
Identity = 58/105 (55.24%), Postives = 76/105 (72.38%), Query Frame = 1
Query:  187 CLRASAEKNSSDGEEATKMVMRKQKGGWKIDFSEEKPPTPLLDTINYPIHMKNLSKEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKI 501
            CL+ +   NS     A       +KG    ++   +PPTPLLDTINYPIHMKNLS ++L+QL+ ELR+D++ +VSKTGGHL ++LGVVELT+ALH +FNTP DKI
Sbjct:   42 CLKPN--NNSHSNRRAKVCASLAEKG----EYYSNRPPTPLLDTINYPIHMKNLSVKELKQLSDELRSDVIFNVSKTGGHLGSSLGVVELTVALHYIFNTPQDKI 140          
BLAST of CN182048 vs. ExPASy Swiss-Prot
Match: DXS_CAPAN (Probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic OS=Capsicum annuum GN=TKT2 PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.660e-23
Identity = 49/75 (65.33%), Postives = 65/75 (86.67%), Query Frame = 1
Query:  277 DFSEEKPPTPLLDTINYPIHMKNLSKEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKI 501
            ++  ++PPTP++DTINYPIHMKNLS ++L+QLA ELR+D + +VSKTGGHL ++LGVVELT+ALH VFN P D+I
Sbjct:   65 EYYTQRPPTPIVDTINYPIHMKNLSLKELKQLADELRSDTIFNVSKTGGHLGSSLGVVELTVALHYVFNAPQDRI 139          
BLAST of CN182048 vs. ExPASy Swiss-Prot
Match: DXS_RHIME (1-deoxy-D-xylulose-5-phosphate synthase OS=Rhizobium meliloti GN=dxs PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 7.215e-19
Identity = 41/69 (59.42%), Postives = 57/69 (82.61%), Query Frame = 1
Query:  295 PPTPLLDTINYPIHMKNLSKEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKI 501
            P TPLLD ++YP  +K +   DL QLAAELRA++V++VS+TGGHL A LGVVELT+A+H++F+TP D++
Sbjct:   10 PATPLLDKVDYPDDLKKIDDRDLPQLAAELRAEMVDAVSRTGGHLGAGLGVVELTIAIHKIFDTPHDRL 78          
BLAST of CN182048 vs. ExPASy Swiss-Prot
Match: DXS_AGRT5 (1-deoxy-D-xylulose-5-phosphate synthase OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=dxs PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 9.423e-19
Identity = 40/69 (57.97%), Postives = 56/69 (81.16%), Query Frame = 1
Query:  295 PPTPLLDTINYPIHMKNLSKEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKI 501
            P TPLLD +N+P  +K +   DL +LA ELR +++++VSKTGGHL A LGVVELT+A+H+VFNTP+D++
Sbjct:    5 PQTPLLDRVNFPSDLKEIDDRDLPELARELRDEMIDAVSKTGGHLGAGLGVVELTIAIHKVFNTPEDRL 73          
BLAST of CN182048 vs. ExPASy Swiss-Prot
Match: DXS2_JANSC (1-deoxy-D-xylulose-5-phosphate synthase 2 OS=Jannaschia sp. (strain CCS1) GN=dxs2 PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 3.581e-18
Identity = 39/71 (54.93%), Postives = 58/71 (81.69%), Query Frame = 1
Query:  289 EKPPTPLLDTINYPIHMKNLSKEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKI 501
            ++P TP+LD +NYP  ++ +S  DL Q A ELRA+++++VS+TGGHL ++LGVVEL++A+H VFNTP DK+
Sbjct:    2 DRPHTPILDQVNYPSDLRRMSNADLAQCADELRAEVISAVSETGGHLGSSLGVVELSVAIHAVFNTPYDKL 72          
BLAST of CN182048 vs. ExPASy Swiss-Prot
Match: DXS_SPHWW (1-deoxy-D-xylulose-5-phosphate synthase OS=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) GN=dxs PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.042e-17
Identity = 42/69 (60.87%), Postives = 55/69 (79.71%), Query Frame = 1
Query:  289 EKPPTPLLDTINYPIHMKNLSKEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDD 495
            ++PPTPLLDT++ P  ++ L   DL QLA ELRA+++++VS TGGHL A LGVVELT+ALH VF+TP D
Sbjct:    3 DRPPTPLLDTVSTPEDLRRLKPADLRQLADELRAEMISAVSVTGGHLGAGLGVVELTVALHYVFDTPRD 71          
BLAST of CN182048 vs. ExPASy Swiss-Prot
Match: DXS_RHILW (1-deoxy-D-xylulose-5-phosphate synthase OS=Rhizobium leguminosarum bv. trifolii (strain WSM2304) GN=dxs PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.042e-17
Identity = 39/69 (56.52%), Postives = 54/69 (78.26%), Query Frame = 1
Query:  295 PPTPLLDTINYPIHMKNLSKEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKI 501
            P TPLLD + YP  ++ L   DL QLA E+R +++++VS+TGGHL A LGVVELT+A+H VF+TPDD++
Sbjct:    5 PKTPLLDQVTYPADLRKLEDRDLPQLAREVRDEMIDAVSRTGGHLGAGLGVVELTIAIHSVFDTPDDRL 73          
BLAST of CN182048 vs. ExPASy Swiss-Prot
Match: DXS_RHILO (1-deoxy-D-xylulose-5-phosphate synthase OS=Rhizobium loti GN=dxs PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.042e-17
Identity = 41/69 (59.42%), Postives = 55/69 (79.71%), Query Frame = 1
Query:  295 PPTPLLDTINYPIHMKNLSKEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKI 501
            P TPLLD +  P  ++ L + +L QLA+ELR ++V++VS+TGGHL A LGVVELT+ALH VFNTPDD++
Sbjct:    5 PHTPLLDKVRIPADLRALDESELPQLASELRLELVDAVSRTGGHLGAGLGVVELTVALHYVFNTPDDRL 73          
BLAST of CN182048 vs. ExPASy Swiss-Prot
Match: DXS_DECAR (1-deoxy-D-xylulose-5-phosphate synthase OS=Dechloromonas aromatica (strain RCB) GN=dxs PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.361e-17
Identity = 41/65 (63.08%), Postives = 55/65 (84.62%), Query Frame = 1
Query:  307 LLDTINYPIHMKNLSKEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKI 501
            LL+TIN P  ++ L ++ L QLA+ELRA +++SVSKTGGHLS+NLG VELT+ALH VFNTP+D++
Sbjct:    6 LLETINSPADLRRLDRKQLPQLASELRAFLIDSVSKTGGHLSSNLGTVELTIALHAVFNTPEDRL 70          
The following BLAST results are available for this feature:
BLAST of CN182048 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 303
Match NameE-valueIdentityDescription
DXS_ORYSJ1.773e-2569.33Probable 1-deoxy-D-xylulose-5-phosphate synthase, ... [more]
DXS_ARATH1.773e-2555.24Probable 1-deoxy-D-xylulose-5-phosphate synthase, ... [more]
DXS_CAPAN1.660e-2365.33Probable 1-deoxy-D-xylulose-5-phosphate synthase, ... [more]
DXS_RHIME7.215e-1959.421-deoxy-D-xylulose-5-phosphate synthase OS=Rhizobi... [more]
DXS_AGRT59.423e-1957.971-deoxy-D-xylulose-5-phosphate synthase OS=Agrobac... [more]
DXS2_JANSC3.581e-1854.931-deoxy-D-xylulose-5-phosphate synthase 2 OS=Janna... [more]
DXS_SPHWW1.042e-1760.871-deoxy-D-xylulose-5-phosphate synthase OS=Sphingo... [more]
DXS_RHILW1.042e-1756.521-deoxy-D-xylulose-5-phosphate synthase OS=Rhizobi... [more]
DXS_RHILO1.042e-1759.421-deoxy-D-xylulose-5-phosphate synthase OS=Rhizobi... [more]
DXS_DECAR1.361e-1763.081-deoxy-D-xylulose-5-phosphate synthase OS=Dechlor... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001N24_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001N24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182048 ID=CN182048; Name=CN182048; organism=Citrus sinensis; type=EST; length=503bp
AGAGGCACAGCTTCCCTCTCTGTCTCTTTCACTTCCTCCTTCGTTATTCA
TCTCGCGCTCACTACTGAATATTGGATCGCACCAACTATGGCTCTCTCTT
CCGGGATTGCTATTGGAGCTAAACAATCTATTTCTCCATTTTTCACTGTT
TCACAACCAAGCCTTAGTTACAGAAAACAGAATTTCTGTTTGAGAGCGTC
CGCTGAGAAGAATAGCTCAGATGGCGAGGAAGCGACGAAGATGGTGATGA
GGAAACAAAAAGGCGGCTGGAAAATTGATTTTTCTGAAGAGAAGCCACCA
ACACCATTGTTGGACACGATTAATTACCCAATTCATATGAAGAATCTCTC
TAAAGAGGATCTTGAACAACTGGCAGCAGAGCTTAGAGCAGATATTGTTA
ACAGTGTATCGAAGACAGGTGGGCATCTTAGTGCAAACTTAGGAGTGGTG
GAGCTAACACTTGCTTTGCATCGTGTTTTCAACACACCTGACGATAAAAT
TAT
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