CN182041

Overview
NameCN182041
Unique NameCN182041
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length798
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN182041 vs. ExPASy Swiss-Prot
Match: VATC_ARATH (V-type proton ATPase subunit C OS=Arabidopsis thaliana GN=VHA-C PE=1 SV=1)

HSP 1 Score: 232.646 bits (592), Expect = 1.894e-60
Identity = 114/149 (76.51%), Postives = 124/149 (83.22%), Query Frame = -1
Query:  352 VTLFGRVADNFRIAAREKGFQIRDFEYSSEAQESRNQELEKLVHDQESLRSSLLQWCYTSYGEVFSSWMHFCAVRVFAESILRYGLPPSFLACVLAPSVKGEKKVRSILEELCGNANSTFWKSEXXXXXXXXXXXXXDSHPYVSFTINL 798
            VTLF RVADNFRIAAREKGFQ+RDFE S EAQE+R QEL KLV DQESLRSSLLQWCYTSYGEVFSSWMHFCAVR FAESI+RYGLPP+FLACVL+P+VK EKKVRSILE LC + NS +WKSE             ++HPYVSFTINL
Sbjct:  226 VTLFTRVADNFRIAAREKGFQVRDFEQSVEAQETRKQELAKLVQDQESLRSSLLQWCYTSYGEVFSSWMHFCAVRTFAESIMRYGLPPAFLACVLSPAVKSEKKVRSILERLCDSTNSLYWKSEEDAGAMAGLAGDSETHPYVSFTINL 374          
BLAST of CN182041 vs. ExPASy Swiss-Prot
Match: VATC_HORVU (V-type proton ATPase subunit C OS=Hordeum vulgare GN=VATC PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 5.957e-22
Identity = 61/111 (54.95%), Postives = 73/111 (65.77%), Query Frame = -1
Query:  472 VTLFGRVADNFRIAAREKGFQIRDFEYSSEAQESRNQELEKLVHDQESLRSS-LLQWCYTSYGEVFSSWMHF-CAVRVFAESILRYGLPPSFLACVLAPSVKGEKKVRSIL 798
            VTLF +V DNF++ AREKGFQIRDFEYS EAQESR QELEKL+ DQE +R+S +      +   VFSSW  F  AVRVF ESILRYG   +   C  +   K  +K +  L
Sbjct:  231 VTLFAKVVDNFKVHAREKGFQIRDFEYSPEAQESRKQELEKLLQDQEVMRTSPIAMGAMLATVRVFSSWDAFSSAVRVFVESILRYGSACTVPVCCPSTIYKEREKSKEHL 341          
BLAST of CN182041 vs. ExPASy Swiss-Prot
Match: VATC1_RAT (V-type proton ATPase subunit C 1 OS=Rattus norvegicus GN=Atp6v1c1 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.327e-21
Identity = 49/119 (41.18%), Postives = 76/119 (63.87%), Query Frame = -1
Query:  442 VTLFGRVADNFRIAAREKGFQIRDFEYSSEAQESRNQELEKLVHDQESLRSSLLQWCYTSYGEVFSSWMHFCAVRVFAESILRYGLPPSFLACVLAPSVKGEKKVRSILEELCGNANST 798
            VTLF +  D+FR  ARE  F +RDF+Y+ E   +  +E+ +L  D++     L++W   ++ E F +W+H  A+RVF ES+LRYGLP +F A +L P+ K  KK+R +L EL  + +S+
Sbjct:  227 VTLFKKAVDDFRHKARENKFIVRDFQYNEEEMRADKEEMNRLSTDKKKQFGPLVRWLKVNFSEAFIAWIHIKALRVFVESVLRYGLPVNFQAMLLQPNKKSVKKLREVLHELYKHLDSS 345          
BLAST of CN182041 vs. ExPASy Swiss-Prot
Match: VATC1_MOUSE (V-type proton ATPase subunit C 1 OS=Mus musculus GN=Atp6v1c1 PE=1 SV=4)

HSP 1 Score: 103.605 bits (257), Expect = 1.327e-21
Identity = 49/119 (41.18%), Postives = 77/119 (64.71%), Query Frame = -1
Query:  442 VTLFGRVADNFRIAAREKGFQIRDFEYSSEAQESRNQELEKLVHDQESLRSSLLQWCYTSYGEVFSSWMHFCAVRVFAESILRYGLPPSFLACVLAPSVKGEKKVRSILEELCGNANST 798
            VTLF +  D+FR  ARE  F +RDF+Y+ E  ++  +E+ +L  D++     L++W   ++ E F +W+H  A+RVF ES+LRYGLP +F A +L P+ K  KK+R +L EL  + +S+
Sbjct:  227 VTLFRKAVDDFRHKARENKFIVRDFQYNEEEMKADKEEMTRLSTDKKKQFGPLVRWLKVNFSEAFIAWIHIKALRVFVESVLRYGLPVNFQAMLLQPNKKSVKKLREVLHELYKHLDSS 345          
BLAST of CN182041 vs. ExPASy Swiss-Prot
Match: VATC1_PONAB (V-type proton ATPase subunit C 1 OS=Pongo abelii GN=ATP6V1C1 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.956e-21
Identity = 49/119 (41.18%), Postives = 77/119 (64.71%), Query Frame = -1
Query:  442 VTLFGRVADNFRIAAREKGFQIRDFEYSSEAQESRNQELEKLVHDQESLRSSLLQWCYTSYGEVFSSWMHFCAVRVFAESILRYGLPPSFLACVLAPSVKGEKKVRSILEELCGNANST 798
            VTLF +  D+FR  ARE  F +RDF+Y+ E  ++  +E+ +L  D++     L++W   ++ E F +W+H  A+RVF ES+LRYGLP +F A +L P+ K  KK+R +L EL  + +S+
Sbjct:  227 VTLFRKAVDDFRHKARENKFIVRDFQYNEEEMKADKEEMNRLSTDKKKQFGPLVRWLKVNFSEAFIAWIHVKALRVFVESVLRYGLPVNFQAMLLQPNKKTLKKLREVLHELYKHLDSS 345          
BLAST of CN182041 vs. ExPASy Swiss-Prot
Match: VATC1_MACFA (V-type proton ATPase subunit C 1 OS=Macaca fascicularis GN=ATP6V1C1 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.956e-21
Identity = 49/119 (41.18%), Postives = 77/119 (64.71%), Query Frame = -1
Query:  442 VTLFGRVADNFRIAAREKGFQIRDFEYSSEAQESRNQELEKLVHDQESLRSSLLQWCYTSYGEVFSSWMHFCAVRVFAESILRYGLPPSFLACVLAPSVKGEKKVRSILEELCGNANST 798
            VTLF +  D+FR  ARE  F +RDF+Y+ E  ++  +E+ +L  D++     L++W   ++ E F +W+H  A+RVF ES+LRYGLP +F A +L P+ K  KK+R +L EL  + +S+
Sbjct:  227 VTLFRKAVDDFRHKARENKFIVRDFQYNEEEMKADKEEMNRLSTDKKKQFGPLVRWLKVNFSEAFIAWIHVKALRVFVESVLRYGLPVNFQAMLLQPNKKTLKKLREVLHELYKHLDSS 345          
BLAST of CN182041 vs. ExPASy Swiss-Prot
Match: VATC1_HUMAN (V-type proton ATPase subunit C 1 OS=Homo sapiens GN=ATP6V1C1 PE=1 SV=4)

HSP 1 Score: 102.449 bits (254), Expect = 2.956e-21
Identity = 49/119 (41.18%), Postives = 77/119 (64.71%), Query Frame = -1
Query:  442 VTLFGRVADNFRIAAREKGFQIRDFEYSSEAQESRNQELEKLVHDQESLRSSLLQWCYTSYGEVFSSWMHFCAVRVFAESILRYGLPPSFLACVLAPSVKGEKKVRSILEELCGNANST 798
            VTLF +  D+FR  ARE  F +RDF+Y+ E  ++  +E+ +L  D++     L++W   ++ E F +W+H  A+RVF ES+LRYGLP +F A +L P+ K  KK+R +L EL  + +S+
Sbjct:  227 VTLFRKAVDDFRHKARENKFIVRDFQYNEEEMKADKEEMNRLSTDKKKQFGPLVRWLKVNFSEAFIAWIHVKALRVFVESVLRYGLPVNFQAMLLQPNKKTLKKLREVLHELYKHLDSS 345          
BLAST of CN182041 vs. ExPASy Swiss-Prot
Match: VTC1A_DANRE (V-type proton ATPase subunit C 1-A OS=Danio rerio GN=atp6v1c1a PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.861e-21
Identity = 48/119 (40.34%), Postives = 77/119 (64.71%), Query Frame = -1
Query:  442 VTLFGRVADNFRIAAREKGFQIRDFEYSSEAQESRNQELEKLVHDQESLRSSLLQWCYTSYGEVFSSWMHFCAVRVFAESILRYGLPPSFLACVLAPSVKGEKKVRSILEELCGNANST 798
            VTLF +  D+FR  ARE  F +RDF+Y+ E  ++  +E+ +L  D++     L++W   ++ E F +W+H  A+RVF ES+LRYGLP +F A +L P+ K  KK+R +L +L  + +S+
Sbjct:  227 VTLFRKAIDDFRHKARENKFTVRDFQYNEEEMKADKEEMTRLSTDKKKQFGPLVRWLKVNFSEAFIAWVHIKALRVFVESVLRYGLPVNFQAMLLQPNKKNMKKLREVLYDLYKHLDSS 345          
BLAST of CN182041 vs. ExPASy Swiss-Prot
Match: VATC1_XENLA (V-type proton ATPase subunit C 1 OS=Xenopus laevis GN=atp6v1c1 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.861e-21
Identity = 48/119 (40.34%), Postives = 77/119 (64.71%), Query Frame = -1
Query:  442 VTLFGRVADNFRIAAREKGFQIRDFEYSSEAQESRNQELEKLVHDQESLRSSLLQWCYTSYGEVFSSWMHFCAVRVFAESILRYGLPPSFLACVLAPSVKGEKKVRSILEELCGNANST 798
            VTLF +  D+FR  ARE  F +RDF+Y+ E  ++  +E+ +L  D++     L++W   ++ E F +W+H  A+RVF ES+LRYGLP +F A +L P+ K  KK+R +L +L  + +S+
Sbjct:  227 VTLFRKAVDDFRHKARENKFVVRDFQYNEEEMKADKEEMNRLSTDKKKQFGPLVRWLKVNFSEAFIAWIHVKALRVFVESVLRYGLPVNFQAMLLQPNKKTMKKLREVLNDLYKHLDSS 345          
BLAST of CN182041 vs. ExPASy Swiss-Prot
Match: VATC1_BOVIN (V-type proton ATPase subunit C 1 OS=Bos taurus GN=ATP6V1C1 PE=1 SV=3)

HSP 1 Score: 102.064 bits (253), Expect = 3.861e-21
Identity = 49/119 (41.18%), Postives = 77/119 (64.71%), Query Frame = -1
Query:  442 VTLFGRVADNFRIAAREKGFQIRDFEYSSEAQESRNQELEKLVHDQESLRSSLLQWCYTSYGEVFSSWMHFCAVRVFAESILRYGLPPSFLACVLAPSVKGEKKVRSILEELCGNANST 798
            VTLF +  D+FR  ARE  F +RDF+Y+ E  ++  +E+ +L  D++     L++W   ++ E F +W+H  A+RVF ES+LRYGLP +F A +L P+ K  KK+R +L EL  + +S+
Sbjct:  227 VTLFRKAVDDFRHKARENKFIVRDFQYNEEEMKADKEEMNRLSTDKKKQFGPLVRWLKVNFSEAFIAWIHVKALRVFVESVLRYGLPVNFQAMLLQPNKKTMKKLREVLYELYKHLDSS 345          
The following BLAST results are available for this feature:
BLAST of CN182041 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
VATC_ARATH1.894e-6076.51V-type proton ATPase subunit C OS=Arabidopsis thal... [more]
VATC_HORVU5.957e-2254.95V-type proton ATPase subunit C OS=Hordeum vulgare ... [more]
VATC1_RAT1.327e-2141.18V-type proton ATPase subunit C 1 OS=Rattus norvegi... [more]
VATC1_MOUSE1.327e-2141.18V-type proton ATPase subunit C 1 OS=Mus musculus G... [more]
VATC1_PONAB2.956e-2141.18V-type proton ATPase subunit C 1 OS=Pongo abelii G... [more]
VATC1_MACFA2.956e-2141.18V-type proton ATPase subunit C 1 OS=Macaca fascicu... [more]
VATC1_HUMAN2.956e-2141.18V-type proton ATPase subunit C 1 OS=Homo sapiens G... [more]
VTC1A_DANRE3.861e-2140.34V-type proton ATPase subunit C 1-A OS=Danio rerio ... [more]
VATC1_XENLA3.861e-2140.34V-type proton ATPase subunit C 1 OS=Xenopus laevis... [more]
VATC1_BOVIN3.861e-2141.18V-type proton ATPase subunit C 1 OS=Bos taurus GN=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001N21_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001N21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182041 ID=CN182041; Name=CN182041; organism=Citrus sinensis; type=EST; length=798bp
CTTTTTTACAACATACAAAACTGCATCAATACTTGTTGATCATTGTAGGA
CAACAAATTTAATGTTCAAGAAGAGCATGAAAATTGAAACATAATAGATA
CAGAAAATAAAACCTCATAAATAATAACTTAAAATACAAATTTCAGATGG
CAAGATCTTCTCCACAAGCTTCCTCCATGAGACTGACCAGAACTATCCAA
GCTGAGATCATAAGTAAACAACAAAAGAATTGAGTTATTGATCCTAATAT
ACATATCTTCAACTCCAGCCCATTATTTATTTTAGTCCAGAGGAATACTT
GAGACTGAATTCTACCGGACATGGAACCGGGGGACTCAGCATCAATCAAA
CAAGATTGATTGTGAACGACACATAAGGATGAGAATCAGCATCCCCTCCC
AAACCCGCCATCATTCCGCCATCATCTTCGGATTTCCAGAATGTGCTGTT
CGCATTGCCGCACAGTTCTTCAAGAATTGAACGCACTTTTTTTTCACCCT
TCACGGAGGGAGCTAAAACACATGCCAAGAAAGATGGCGGCAAACCATAT
CTCAAAATGCTCTCTGCAAAGACACGTACAGCACAAAAATGCATCCAGGA
ACTAAAAACCTCGCCGTAACTGGTATAGCACCATTGCAAAAGAGAGCTTC
TCAAGCTTTCTTGGTCGTGAACTAATTTTTCCAACTCCTGATTACGACTT
TCTTGTGCTTCAGAACTATATTCAAAATCACGAATTTGGAAGCCCTTCTC
ACGTGCAGCTATTCTGAAATTGTCTGCAACACGTCCAAATAGTGTGAC
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