CN182040

Overview
NameCN182040
Unique NameCN182040
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length679
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig32 contig Csv1_Contig32:44..721. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN182040 vs. ExPASy Swiss-Prot
Match: TM9S2_RAT (Transmembrane 9 superfamily member 2 OS=Rattus norvegicus GN=Tm9sf2 PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.617e-31
Identity = 56/96 (58.33%), Postives = 68/96 (70.83%), Query Frame = -3 
Query:  237 TCAEITIVLCYFQLCSEDYHWWWRSYLTAGXXXXXXXXXXXXXXFTKLEITKLVSGILYFGYMVIVSYAFFVLTGTIGFYACFWFVRKIYSSVKID 524
            TC+E TI+LCYF LC+EDYHW WRS+LT+G              F+KL+IT   S ILYFGY +I+   FF+ TGTIGF+ACFWFV KIYS VK+D
Sbjct:  568 TCSEATILLCYFHLCAEDYHWQWRSFLTSGFTAVYFLVYAIHYFFSKLQITGTASTILYFGYTMIMVLIFFLFTGTIGFFACFWFVTKIYSVVKVD 663

HSP 2 Score: 33.113 bits (74), Expect = 1.617e-31
Identity = 14/28 (50.00%), Postives = 20/28 (71.43%), Query Frame = -2 
Query:  595 YMTPVFSILIEGILPFGAVFIELFLHLD 678
            Y  P+  I++ GILPFG +FI+LF  L+
Sbjct:  517 YTKPLPGIIMGGILPFGCIFIQLFFILN 544
[Close]
BLAST of CN182040 vs. ExPASy Swiss-Prot
Match: TM9S2_PONAB (Transmembrane 9 superfamily member 2 OS=Pongo abelii GN=TM9SF2 PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.617e-31
Identity = 56/96 (58.33%), Postives = 68/96 (70.83%), Query Frame = -3 
Query:  237 TCAEITIVLCYFQLCSEDYHWWWRSYLTAGXXXXXXXXXXXXXXFTKLEITKLVSGILYFGYMVIVSYAFFVLTGTIGFYACFWFVRKIYSSVKID 524
            TC+E TI+LCYF LC+EDYHW WRS+LT+G              F+KL+IT   S ILYFGY +I+   FF+ TGTIGF+ACFWFV KIYS VK+D
Sbjct:  568 TCSEATILLCYFHLCAEDYHWQWRSFLTSGFTAVYFLIYAVHYFFSKLQITGTASTILYFGYTMIMVLIFFLFTGTIGFFACFWFVTKIYSVVKVD 663

HSP 2 Score: 33.113 bits (74), Expect = 1.617e-31
Identity = 14/28 (50.00%), Postives = 20/28 (71.43%), Query Frame = -2 
Query:  595 YMTPVFSILIEGILPFGAVFIELFLHLD 678
            Y  P+  I++ GILPFG +FI+LF  L+
Sbjct:  517 YTKPLPGIIMGGILPFGCIFIQLFFILN 544
[Close]
BLAST of CN182040 vs. ExPASy Swiss-Prot
Match: TM9S2_MOUSE (Transmembrane 9 superfamily member 2 OS=Mus musculus GN=Tm9sf2 PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.617e-31
Identity = 56/96 (58.33%), Postives = 68/96 (70.83%), Query Frame = -3 
Query:  237 TCAEITIVLCYFQLCSEDYHWWWRSYLTAGXXXXXXXXXXXXXXFTKLEITKLVSGILYFGYMVIVSYAFFVLTGTIGFYACFWFVRKIYSSVKID 524
            TC+E TI+LCYF LC+EDYHW WRS+LT+G              F+KL+IT   S ILYFGY +I+   FF+ TGTIGF+ACFWFV KIYS VK+D
Sbjct:  567 TCSEATILLCYFHLCAEDYHWQWRSFLTSGFTAVYFLIYAIHYFFSKLQITGTASTILYFGYTMIMVLIFFLFTGTIGFFACFWFVTKIYSVVKVD 662

HSP 2 Score: 33.113 bits (74), Expect = 1.617e-31
Identity = 14/28 (50.00%), Postives = 20/28 (71.43%), Query Frame = -2 
Query:  595 YMTPVFSILIEGILPFGAVFIELFLHLD 678
            Y  P+  I++ GILPFG +FI+LF  L+
Sbjct:  516 YTKPLPGIIMGGILPFGCIFIQLFFILN 543
[Close]
BLAST of CN182040 vs. ExPASy Swiss-Prot
Match: TM9S2_HUMAN (Transmembrane 9 superfamily member 2 OS=Homo sapiens GN=TM9SF2 PE=1 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.617e-31
Identity = 56/96 (58.33%), Postives = 68/96 (70.83%), Query Frame = -3 
Query:  237 TCAEITIVLCYFQLCSEDYHWWWRSYLTAGXXXXXXXXXXXXXXFTKLEITKLVSGILYFGYMVIVSYAFFVLTGTIGFYACFWFVRKIYSSVKID 524
            TC+E TI+LCYF LC+EDYHW WRS+LT+G              F+KL+IT   S ILYFGY +I+   FF+ TGTIGF+ACFWFV KIYS VK+D
Sbjct:  568 TCSEATILLCYFHLCAEDYHWQWRSFLTSGFTAVYFLIYAVHYFFSKLQITGTASTILYFGYTMIMVLIFFLFTGTIGFFACFWFVTKIYSVVKVD 663

HSP 2 Score: 33.113 bits (74), Expect = 1.617e-31
Identity = 14/28 (50.00%), Postives = 20/28 (71.43%), Query Frame = -2 
Query:  595 YMTPVFSILIEGILPFGAVFIELFLHLD 678
            Y  P+  I++ GILPFG +FI+LF  L+
Sbjct:  517 YTKPLPGIIMGGILPFGCIFIQLFFILN 544
[Close]
BLAST of CN182040 vs. ExPASy Swiss-Prot
Match: PHG1A_DICDI (Putative phagocytic receptor 1a OS=Dictyostelium discoideum GN=phg1a PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.104e-29
Identity = 54/96 (56.25%), Postives = 67/96 (69.79%), Query Frame = -3 
Query:  237 TCAEITIVLCYFQLCSEDYHWWWRSYLTAGXXXXXXXXXXXXXXFTKLEITKLVSGILYFGYMVIVSYAFFVLTGTIGFYACFWFVRKIYSSVKID 524
            T AEI+IV+CYFQLC+ED+HWWWRS+LTAG              F  L ITK +S +L F Y  I+S AF  LTGTIGFY+C++ VRKIYSS+ I+
Sbjct:  547 TSAEISIVMCYFQLCAEDHHWWWRSFLTAG-SSSLYMFIYSVSFFRYLGITKFISSLLDFSYSFIMSLAFAALTGTIGFYSCYFLVRKIYSSIHIN 641

HSP 2 Score: 38.891 bits (89), Expect = 1.104e-29
Identity = 18/23 (78.26%), Postives = 19/23 (82.61%), Query Frame = -2 
Query:  610 YMTPVFSILIEGILPFGAVFIEL 678
            YM P  SIL+ GILPFGAVFIEL
Sbjct:  496 YMNPYLSILMGGILPFGAVFIEL 518
[Close]
BLAST of CN182040 vs. ExPASy Swiss-Prot
Match: TM9S4_RAT (Transmembrane 9 superfamily member 4 OS=Rattus norvegicus GN=Tm9sf4 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 2.012e-28
Identity = 46/96 (47.92%), Postives = 67/96 (69.79%), Query Frame = -3 
Query:  237 TCAEITIVLCYFQLCSEDYHWWWRSYLTAGXXXXXXXXXXXXXXFTKLEITKLVSGILYFGYMVIVSYAFFVLTGTIGFYACFWFVRKIYSSVKID 524
            +C++I+IV+ YFQLC+EDY WWWR++L +G                KL+I + +  +LYFGY  ++  +F++LTGTIGFYA + FVRKIY++VKID
Sbjct:  548 SCSQISIVMVYFQLCAEDYRWWWRNFLVSGGSAFYVLVYAIFYFVNKLDIVEFIPSLLYFGYTTLMVLSFWLLTGTIGFYAAYMFVRKIYAAVKID 643

HSP 2 Score: 35.039 bits (79), Expect = 2.012e-28
Identity = 16/24 (66.67%), Postives = 18/24 (75.00%), Query Frame = -2 
Query:  607 YMTPVFSILIEGILPFGAVFIELF 678
            YM     IL+ GILPFGA+FIELF
Sbjct:  497 YMNRFVGILMAGILPFGAMFIELF 520
[Close]
BLAST of CN182040 vs. ExPASy Swiss-Prot
Match: TM9S4_MOUSE (Transmembrane 9 superfamily member 4 OS=Mus musculus GN=Tm9sf4 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 2.012e-28
Identity = 46/96 (47.92%), Postives = 67/96 (69.79%), Query Frame = -3 
Query:  237 TCAEITIVLCYFQLCSEDYHWWWRSYLTAGXXXXXXXXXXXXXXFTKLEITKLVSGILYFGYMVIVSYAFFVLTGTIGFYACFWFVRKIYSSVKID 524
            +C++I+IV+ YFQLC+EDY WWWR++L +G                KL+I + +  +LYFGY  ++  +F++LTGTIGFYA + FVRKIY++VKID
Sbjct:  548 SCSQISIVMVYFQLCAEDYRWWWRNFLVSGGSAFYVLVYAIFYFVNKLDIVEFIPSLLYFGYTTLMVLSFWLLTGTIGFYAAYMFVRKIYAAVKID 643

HSP 2 Score: 35.039 bits (79), Expect = 2.012e-28
Identity = 16/24 (66.67%), Postives = 18/24 (75.00%), Query Frame = -2 
Query:  607 YMTPVFSILIEGILPFGAVFIELF 678
            YM     IL+ GILPFGA+FIELF
Sbjct:  497 YMNRFVGILMAGILPFGAMFIELF 520
[Close]
BLAST of CN182040 vs. ExPASy Swiss-Prot
Match: TM9S4_PONAB (Transmembrane 9 superfamily member 4 OS=Pongo abelii GN=TM9SF4 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 2.012e-28
Identity = 46/96 (47.92%), Postives = 67/96 (69.79%), Query Frame = -3 
Query:  237 TCAEITIVLCYFQLCSEDYHWWWRSYLTAGXXXXXXXXXXXXXXFTKLEITKLVSGILYFGYMVIVSYAFFVLTGTIGFYACFWFVRKIYSSVKID 524
            +C++I+IV+ YFQLC+EDY WWWR++L +G                KL+I + +  +LYFGY  ++  +F++LTGTIGFYA + FVRKIY++VKID
Sbjct:  547 SCSQISIVMVYFQLCAEDYRWWWRNFLVSGGSAFYVLVYAIFYFVNKLDIVEFIPSLLYFGYTALMVLSFWLLTGTIGFYAAYMFVRKIYAAVKID 642

HSP 2 Score: 35.039 bits (79), Expect = 2.012e-28
Identity = 16/24 (66.67%), Postives = 18/24 (75.00%), Query Frame = -2 
Query:  607 YMTPVFSILIEGILPFGAVFIELF 678
            YM     IL+ GILPFGA+FIELF
Sbjct:  496 YMNRFVGILMAGILPFGAMFIELF 519
[Close]
BLAST of CN182040 vs. ExPASy Swiss-Prot
Match: TM9S4_HUMAN (Transmembrane 9 superfamily member 4 OS=Homo sapiens GN=TM9SF4 PE=1 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 2.012e-28
Identity = 46/96 (47.92%), Postives = 67/96 (69.79%), Query Frame = -3 
Query:  237 TCAEITIVLCYFQLCSEDYHWWWRSYLTAGXXXXXXXXXXXXXXFTKLEITKLVSGILYFGYMVIVSYAFFVLTGTIGFYACFWFVRKIYSSVKID 524
            +C++I+IV+ YFQLC+EDY WWWR++L +G                KL+I + +  +LYFGY  ++  +F++LTGTIGFYA + FVRKIY++VKID
Sbjct:  547 SCSQISIVMVYFQLCAEDYRWWWRNFLVSGGSAFYVLVYAIFYFVNKLDIVEFIPSLLYFGYTALMVLSFWLLTGTIGFYAAYMFVRKIYAAVKID 642

HSP 2 Score: 35.039 bits (79), Expect = 2.012e-28
Identity = 16/24 (66.67%), Postives = 18/24 (75.00%), Query Frame = -2 
Query:  607 YMTPVFSILIEGILPFGAVFIELF 678
            YM     IL+ GILPFGA+FIELF
Sbjct:  496 YMNRFVGILMAGILPFGAMFIELF 519
[Close]
BLAST of CN182040 vs. ExPASy Swiss-Prot
Match: TM9S4_BOVIN (Transmembrane 9 superfamily member 4 OS=Bos taurus GN=TM9SF4 PE=2 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 2.012e-28
Identity = 46/96 (47.92%), Postives = 67/96 (69.79%), Query Frame = -3 
Query:  237 TCAEITIVLCYFQLCSEDYHWWWRSYLTAGXXXXXXXXXXXXXXFTKLEITKLVSGILYFGYMVIVSYAFFVLTGTIGFYACFWFVRKIYSSVKID 524
            +C++I+IV+ YFQLC+EDY WWWR++L +G                KL+I + +  +LYFGY  ++  +F++LTGTIGFYA + FVRKIY++VKID
Sbjct:  547 SCSQISIVMVYFQLCAEDYRWWWRNFLVSGGSAFYVLVYAIFYFVNKLDIVEFIPSLLYFGYTALMVLSFWLLTGTIGFYAAYMFVRKIYAAVKID 642

HSP 2 Score: 35.039 bits (79), Expect = 2.012e-28
Identity = 16/24 (66.67%), Postives = 18/24 (75.00%), Query Frame = -2 
Query:  607 YMTPVFSILIEGILPFGAVFIELF 678
            YM     IL+ GILPFGA+FIELF
Sbjct:  496 YMNRFVGILMAGILPFGAMFIELF 519
The following BLAST results are available for this feature:
BLAST of CN182040 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
TM9S2_RAT1.617e-3158.33Transmembrane 9 superfamily member 2 OS=Rattus nor... [more]
TM9S2_PONAB1.617e-3158.33Transmembrane 9 superfamily member 2 OS=Pongo abel... [more]
TM9S2_MOUSE1.617e-3158.33Transmembrane 9 superfamily member 2 OS=Mus muscul... [more]
TM9S2_HUMAN1.617e-3158.33Transmembrane 9 superfamily member 2 OS=Homo sapie... [more]
PHG1A_DICDI1.104e-2956.25Putative phagocytic receptor 1a OS=Dictyostelium d... [more]
TM9S4_RAT2.012e-2847.92Transmembrane 9 superfamily member 4 OS=Rattus nor... [more]
TM9S4_MOUSE2.012e-2847.92Transmembrane 9 superfamily member 4 OS=Mus muscul... [more]
TM9S4_PONAB2.012e-2847.92Transmembrane 9 superfamily member 4 OS=Pongo abel... [more]
TM9S4_HUMAN2.012e-2847.92Transmembrane 9 superfamily member 4 OS=Homo sapie... [more]
TM9S4_BOVIN2.012e-2847.92Transmembrane 9 superfamily member 4 OS=Bos taurus... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001N20_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001N20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182040 ID=CN182040; Name=CN182040; organism=Citrus sinensis; type=EST; length=679bp
GAGACAATCTAAACTTCTTGCATAGAAACTAATGGAAGTACACGTTTGAT
TTTTGTAGTGTAAACATAAGAACACATGCACATTGCTCATCCCTACTCTA
TTTCAAAATAAAAAACGGTTTTCAGGAAAATGGGAAATAAACTTCCCATG
GTGTAAATCTGCAGATACAGTCAATATGGTTCAGACTCTTTGCTTCATCT
ACTACTTGTCCAAGGATCTTCAAAATATCCAGATTAGTCAATTTTCACGG
AGGAATAGATCTTGCGTACAAACCAGAAGCATGCGTAAAAGCCAATTGTC
CCCGTCAAGACAAAGAAAGCATACGAAACAATTACCATGTACCCAAAGTA
AAGGATGCCCGAAACCAGCTTTGTAATTTCCAACTTGGTGAAGAAGTAGA
AAATTGAGTAGAGAAAAAGGTACAGAGCAGAGGAGCCAGCAGTCAGGTAA
GATCTCCACCACCAATGGTAGTCCTCACTACACAACTGAAAGTAGCAGAG
CACTATTGTTATCTCTGCGCAAGTGATTAGTAGTATAACAAACACGATAA
AAAGGAAGCCAAAGATGTAATAGAACTGGTTCAGCCATATAGATGTCAAG
ATGAAGAAAGAGCTCGATGAAGACAGCCCCAAATGGAAGAATGCCTTCAA
TGAGTATGGAGAATACTGGTGTCATGTAC
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