CN182036

Overview
NameCN182036
Unique NameCN182036
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length534
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN182036_ssr156 microsatellite CN182036_ssr156:156..167. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2301 contig Csv1_Contig2301:1..534. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN182036 vs. ExPASy Swiss-Prot
Match: METE_CATRO (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Catharanthus roseus GN=METE PE=2 SV=1)

HSP 1 Score: 324.324 bits (830), Expect = 2.209e-88
Identity = 162/177 (91.53%), Postives = 171/177 (96.61%), Query Frame = 3
Query:    3 WLAFAAQKVVEVNALAKALSGQKDEAYFSSNAAAQASRKSSPRVTNEAVQKAAAALKGSDHRRATNVSARLDAQQKKLNLPNLPTTTIGSFPQTMDLRRVRREFKAKKISEDDYVKTIKEEINNVVKLQEELDIDVLVHGEPERNDMVEYFGEQLSGFAFTVNGWVQSYGSRCVKPP 533
            WLAFAAQKVVEVNALAKAL+G+KDEA+FS NAAAQASRKSSPRVTN+AVQKAAAAL+GSDHRRAT VSARLDAQQKKLNLP LPTTTIGSFPQT++LRRVRRE+KAKKISEDDYVK IKEEI+ VVKLQEELDIDVLVHGEPERNDMVEYFGEQLSGFAFT NGWVQSYGSRCVKPP
Sbjct:  350 WLAFAAQKVVEVNALAKALAGEKDEAFFSENAAAQASRKSSPRVTNQAVQKAAAALRGSDHRRATTVSARLDAQQKKLNLPVLPTTTIGSFPQTLELRRVRREYKAKKISEDDYVKAIKEEISKVVKLQEELDIDVLVHGEPERNDMVEYFGEQLSGFAFTANGWVQSYGSRCVKPP 526          
BLAST of CN182036 vs. ExPASy Swiss-Prot
Match: METE_ARATH (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Arabidopsis thaliana GN=CIMS PE=1 SV=1)

HSP 1 Score: 318.546 bits (815), Expect = 1.212e-86
Identity = 160/177 (90.40%), Postives = 168/177 (94.92%), Query Frame = 3
Query:    3 WLAFAAQKVVEVNALAKALSGQKDEAYFSSNAAAQASRKSSPRVTNEAVQKAAAALKGSDHRRATNVSARLDAQQKKLNLPNLPTTTIGSFPQTMDLRRVRREFKAKKISEDDYVKTIKEEINNVVKLQEELDIDVLVHGEPERNDMVEYFGEQLSGFAFTVNGWVQSYGSRCVKPP 533
            WLAFAAQKVVEVNALAKAL+GQKDEA FS+NAAA ASR+SSPRVTNE VQKAAAALKGSDHRRATNVSARLDAQQKKLNLP LPTTTIGSFPQT++LRRVRRE+KAKK+SE+DYVK IKEEI  VV LQEELDIDVLVHGEPERNDMVEYFGEQLSGFAFT NGWVQSYGSRCVKPP
Sbjct:  350 WLAFAAQKVVEVNALAKALAGQKDEALFSANAAALASRRSSPRVTNEGVQKAAAALKGSDHRRATNVSARLDAQQKKLNLPILPTTTIGSFPQTVELRRVRREYKAKKVSEEDYVKAIKEEIKKVVDLQEELDIDVLVHGEPERNDMVEYFGEQLSGFAFTANGWVQSYGSRCVKPP 526          
BLAST of CN182036 vs. ExPASy Swiss-Prot
Match: METE_MESCR (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Mesembryanthemum crystallinum GN=METE PE=2 SV=1)

HSP 1 Score: 317.775 bits (813), Expect = 2.067e-86
Identity = 159/177 (89.83%), Postives = 170/177 (96.05%), Query Frame = 3
Query:    3 WLAFAAQKVVEVNALAKALSGQKDEAYFSSNAAAQASRKSSPRVTNEAVQKAAAALKGSDHRRATNVSARLDAQQKKLNLPNLPTTTIGSFPQTMDLRRVRREFKAKKISEDDYVKTIKEEINNVVKLQEELDIDVLVHGEPERNDMVEYFGEQLSGFAFTVNGWVQSYGSRCVKPP 533
            WLAFAAQKV+EVNALAKALSGQKDEA+FS+NAAA ASRKSSPRVTNEAVQKAA ALKGSDHRRAT VS+RLDAQQKKLNLP LPTTTIGSFPQT++LRRVRRE+KAKKISE++YVK IKEEI+ VVKLQEELDIDVLVHGEPERNDMVEYFGEQLSGFAF+ NGWVQSYGSRCVKPP
Sbjct:  350 WLAFAAQKVLEVNALAKALSGQKDEAFFSANAAALASRKSSPRVTNEAVQKAATALKGSDHRRATTVSSRLDAQQKKLNLPILPTTTIGSFPQTVELRRVRREYKAKKISEEEYVKAIKEEISKVVKLQEELDIDVLVHGEPERNDMVEYFGEQLSGFAFSANGWVQSYGSRCVKPP 526          
BLAST of CN182036 vs. ExPASy Swiss-Prot
Match: METE_SOLSC (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Solenostemon scutellarioides GN=MET PE=1 SV=2)

HSP 1 Score: 315.464 bits (807), Expect = 1.026e-85
Identity = 157/177 (88.70%), Postives = 167/177 (94.35%), Query Frame = 3
Query:    3 WLAFAAQKVVEVNALAKALSGQKDEAYFSSNAAAQASRKSSPRVTNEAVQKAAAALKGSDHRRATNVSARLDAQQKKLNLPNLPTTTIGSFPQTMDLRRVRREFKAKKISEDDYVKTIKEEINNVVKLQEELDIDVLVHGEPERNDMVEYFGEQLSGFAFTVNGWVQSYGSRCVKPP 533
            WLAFAAQK+VEVNALAKAL+G KDEA+FS NAAAQASRKSSPRV NEAVQKAAAAL+GS+HRR TNVSARLDAQQKKLNLP LPTTTIGSFPQT++LRRVRREFK  +ISE++YVK IKEEIN VVKLQEELDIDVLVHGEPERNDMVEYFGEQLSGFAFT NGWVQSYGSRCVKPP
Sbjct:  349 WLAFAAQKIVEVNALAKALTGHKDEAFFSPNAAAQASRKSSPRVNNEAVQKAAAALRGSEHRRVTNVSARLDAQQKKLNLPILPTTTIGSFPQTVELRRVRREFKPTRISEEEYVKAIKEEINKVVKLQEELDIDVLVHGEPERNDMVEYFGEQLSGFAFTANGWVQSYGSRCVKPP 525          
BLAST of CN182036 vs. ExPASy Swiss-Prot
Match: METE_BORA1 (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Bordetella avium (strain 197N) GN=metE PE=3 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 3.811e-48
Identity = 97/180 (53.89%), Postives = 130/180 (72.22%), Query Frame = 3
Query:    3 WLAFAAQKVVEVNALAKALSGQKDEAY---FSSNAAAQASRKSSPRVTNEAVQKAAAALKGSDHRRATNVSARLDAQQKKLNLPNLPTTTIGSFPQTMDLRRVRREFKAKKISEDDYVKTIKEEINNVVKLQEELDIDVLVHGEPERNDMVEYFGEQLSGFAFTVNGWVQSYGSRCVKPP 533
            WL+FA+QK+ E++ L +AL G   +A     ++  AA A+R+SSPR+ N AV +  AA +     RA   + R+  QQ +LNLP  PTTTIGSFPQT ++R +RR++K+  +S+  Y   I++EI  V++ QE++ +DVLVHGEPERNDMVEYFGE L+GFAFT NGWVQSYGSRCVKPP
Sbjct:  353 WLSFASQKLDELSLLGRALDGDSSQAVQEGLAAQRAALAARRSSPRIHNPAVGRRMAASEQVSRDRAP-FAERIRQQQARLNLPPFPTTTIGSFPQTAEIRGLRRDWKSGALSDSTYEALIRKEIEAVIRFQEKVGLDVLVHGEPERNDMVEYFGELLAGFAFTKNGWVQSYGSRCVKPP 531          
BLAST of CN182036 vs. ExPASy Swiss-Prot
Match: METE_RALSO (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Ralstonia solanacearum GN=metE PE=3 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 6.501e-48
Identity = 98/179 (54.75%), Postives = 129/179 (72.07%), Query Frame = 3
Query:    3 WLAFAAQKVVEVNALAKALSGQKDEAY--FSSNAAAQASRKSSPRVTNEAVQKAAAALKGSDHRRATNVSARLDAQQKKLNLPNLPTTTIGSFPQTMDLRRVRREFKAKKISEDDYVKTIKEEINNVVKLQEELDIDVLVHGEPERNDMVEYFGEQLSGFAFTVNGWVQSYGSRCVKPP 533
            WLAFA QK+ E+  L +A+   +D A+   + +AAA ASR +S RV N++V+K AAA++  D  RA     R  AQQ +LNLP LPTTTIGSFPQT ++R+ R ++K  ++    Y++ ++ EI +VV+ QE L +D+LVHGE ERNDMVEYFGE L G+AFT NGWVQSYGSRCVKPP
Sbjct:  343 WLAFARQKLDELAVLKRAVIDGRDAAHAALAGSAAAIASRAASRRVHNDSVKKRAAAIRAQDAERAAPYPVRAAAQQARLNLPLLPTTTIGSFPQTAEIRQARAQYKRGELQALTYLERMRAEIADVVQRQEALGLDMLVHGEAERNDMVEYFGELLWGYAFTANGWVQSYGSRCVKPP 521          
BLAST of CN182036 vs. ExPASy Swiss-Prot
Match: METE_BURA4 (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Burkholderia ambifaria (strain MC40-6) GN=metE PE=3 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 8.491e-48
Identity = 99/179 (55.31%), Postives = 124/179 (69.27%), Query Frame = 3
Query:    3 WLAFAAQKVVEVNALAKALSGQKDEAY--FSSNAAAQASRKSSPRVTNEAVQKAAAALKGSDHRRATNVSARLDAQQKKLNLPNLPTTTIGSFPQTMDLRRVRREFKAKKISEDDYVKTIKEEINNVVKLQEELDIDVLVHGEPERNDMVEYFGEQLSGFAFTVNGWVQSYGSRCVKPP 533
            WLAFA QK+ E+N LA AL+  +D+     ++NAAA  SR+ SPRV N AV+ A A +      RA+  + R   Q  +LNLP  PTTTIGSFPQT D+R+ RR+FK+  + E  Y   ++ EI   V+ QE L++DVLVHGE ERNDMVEYFGEQL G+AF+  GWVQSYGSRCVKPP
Sbjct:  351 WLAFALQKLDELNVLATALNEGRDKVADALAANAAAIDSRRRSPRVNNPAVKAALARIDAQLGNRASPYTQRAPKQSARLNLPAFPTTTIGSFPQTADIRQARRQFKSGALDEAGYRAAMQAEIERSVREQESLELDVLVHGEAERNDMVEYFGEQLDGYAFSQFGWVQSYGSRCVKPP 529          
BLAST of CN182036 vs. ExPASy Swiss-Prot
Match: METE_CHRSD (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=metE PE=3 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 3.227e-47
Identity = 98/180 (54.44%), Postives = 122/180 (67.78%), Query Frame = 3
Query:    3 WLAFAAQKVVEVNALAKALSGQ---KDEAYFSSNAAAQASRKSSPRVTNEAVQKAAAALKGSDHRRATNVSARLDAQQKKLNLPNLPTTTIGSFPQTMDLRRVRREFKAKKISEDDYVKTIKEEINNVVKLQEELDIDVLVHGEPERNDMVEYFGEQLSGFAFTVNGWVQSYGSRCVKPP 533
            WLAFA QK+ E+  LA  L G+   +D A   +  +A  +R+ SPR+   AV +  AA+   D  RA+  + R  AQ + L+LP  PTTTIGSFPQT D+R  RR FK+ ++S DDY   +++EI + V+ QE L IDV VHGEPERNDMVEYFGE L GFAFT  GWVQSYGSRCVKPP
Sbjct:  347 WLAFARQKLDEIVTLAHLLDGRATPEDTARLEAATSALDARRQSPRIHKPAVGERLAAVSADDAERASPYATRAKAQHRHLDLPLFPTTTIGSFPQTQDIRAARRAFKSGELSRDDYEARMRDEIAHAVERQEALAIDVPVHGEPERNDMVEYFGELLDGFAFTRFGWVQSYGSRCVKPP 526          
BLAST of CN182036 vs. ExPASy Swiss-Prot
Match: METE_SACD2 (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=metE PE=3 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 5.504e-47
Identity = 97/179 (54.19%), Postives = 126/179 (70.39%), Query Frame = 3
Query:    3 WLAFAAQKVVEVNALAKAL-SGQKDEAY-FSSNAAAQASRKSSPRVTNEAVQKAAAALKGSDHRRATNVSARLDAQQKKLNLPNLPTTTIGSFPQTMDLRRVRREFKAKKISEDDYVKTIKEEINNVVKLQEELDIDVLVHGEPERNDMVEYFGEQLSGFAFTVNGWVQSYGSRCVKPP 533
            WLAFA QK+ E+N L +AL +G+   A     NA A A+RK+S +V N  VQ     +  S   R +  + R++ QQ K NLP LPTTTIGSFPQT ++R+ R+ FK+ +IS+  Y +T++ EI + ++LQE++ IDVLVHGE ERNDMVEYFGEQL G+ FT  GWVQSYGSRCVKPP
Sbjct:  352 WLAFAKQKLQELNILQRALDNGETSVAEALVHNAGAIAARKASAKVNNAKVQSLVNNISPSLSERESPFATRIEKQQAKYNLPTLPTTTIGSFPQTSEIRKNRKAFKSGEISQQQYDRTLRAEIAHAIELQEKIGIDVLVHGEAERNDMVEYFGEQLDGYVFTQFGWVQSYGSRCVKPP 530          
BLAST of CN182036 vs. ExPASy Swiss-Prot
Match: METE_BORPE (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Bordetella pertussis GN=metE PE=3 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 7.188e-47
Identity = 96/180 (53.33%), Postives = 123/180 (68.33%), Query Frame = 3
Query:    3 WLAFAAQKVVEVNALAKALSGQKDEAYFSSNAAAQAS---RKSSPRVTNEAVQKAAAALKGSDHRRATNVSARLDAQQKKLNLPNLPTTTIGSFPQTMDLRRVRREFKAKKISEDDYVKTIKEEINNVVKLQEELDIDVLVHGEPERNDMVEYFGEQLSGFAFTVNGWVQSYGSRCVKPP 533
            WL+FA QK+ E+  L KAL G  D A     AA +A+   R+ SPR+ N AV +  A   G    RA     R+  QQ +L LP  PTTTIGSFPQT ++R +RR++K+  +++  Y   I++EI  V++ QE++ +DVLVHGEPERNDMVEYFGE L+GFAFT NGWVQSYGSRCVKPP
Sbjct:  353 WLSFAVQKLDELCLLGKALGGDADPAVQQGLAAQRAALQARRQSPRIHNPAVAQRMAGQAGVSRERAP-FGQRIARQQSELRLPAFPTTTIGSFPQTAEIRALRRDWKSGALTDSAYENAIRKEIEEVIRFQEKVGLDVLVHGEPERNDMVEYFGELLAGFAFTKNGWVQSYGSRCVKPP 531          
The following BLAST results are available for this feature:
BLAST of CN182036 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 271
Match NameE-valueIdentityDescription
METE_CATRO2.209e-8891.535-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_ARATH1.212e-8690.405-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_MESCR2.067e-8689.835-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_SOLSC1.026e-8588.705-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_BORA13.811e-4853.895-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_RALSO6.501e-4854.755-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_BURA48.491e-4855.315-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_CHRSD3.227e-4754.445-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_SACD25.504e-4754.195-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_BORPE7.188e-4753.335-methyltetrahydropteroyltriglutamate--homocystein... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001N16_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001N16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182036 ID=CN182036; Name=CN182036; organism=Citrus sinensis; type=EST; length=534bp
GCTGGCTTGCATTTGCTGCACAGAAAGTAGTTGAAGTAAATGCATTGGCC
AAGGCATTGTCTGGGCAAAAGGATGAGGCATACTTCTCTTCTAATGCTGC
AGCTCAGGCTTCAAGAAAATCCTCCCCAAGGGTGACAAATGAGGCTGTCC
AAAAGGCTGCTGCTGCTTTGAAGGGTTCTGACCATCGCCGAGCCACAAAT
GTCAGTGCTAGGTTGGATGCTCAGCAGAAGAAGTTGAACTTGCCAAATCT
TCCTACCACCACCATTGGATCTTTCCCACAAACGATGGATCTCAGAAGAG
TCCGTCGTGAATTCAAGGCCAAGAAAATCTCTGAGGATGACTATGTCAAG
ACTATCAAGGAGGAAATCAACAACGTTGTCAAGCTCCAGGAAGAGCTTGA
CATTGATGTTTTGGTGCATGGAGAACCAGAGAGGAATGATATGGTTGAGT
ACTTCGGTGAGCAATTATCTGGTTTTGCCTTCACTGTGAATGGGTGGGTT
CAATCTTATGGCTCCCGCTGTGTCAAGCCTCCTA
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