CN182028

Overview
NameCN182028
Unique NameCN182028
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length483
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2299 contig Csv1_Contig2299:1..483. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN182028 vs. ExPASy Swiss-Prot
Match: NAT3_ARATH (Nucleobase-ascorbate transporter 3 OS=Arabidopsis thaliana GN=NAT3 PE=2 SV=2)

HSP 1 Score: 119.013 bits (297), Expect = 1.082e-26
Identity = 56/93 (60.22%), Postives = 65/93 (69.89%), Query Frame = -3
Query:  203 QYFASKTPEDGHGPVRTGGGWFNDIWTPFFSSPPTVAMIVGTVLDNPLDPRDPVAD-RGLPWWKPFQPRRGDFRNEEFSSFPLRINEYIPPRF 478
            QYF + T   G+GPVRT GGWFNDI    F+S P VA I+ T+LDN L+ R    D RG+PWWKPFQ R GD RN+EF S PLRINE +P RF
Sbjct:  458 QYFLANTSRAGYGPVRTAGGWFNDILNTIFASAPLVATILATILDNTLEARHASDDARGIPWWKPFQHRNGDGRNDEFYSMPLRINELMPTRF 550          
BLAST of CN182028 vs. ExPASy Swiss-Prot
Match: NAT2_ARATH (Nucleobase-ascorbate transporter 2 OS=Arabidopsis thaliana GN=NAT2 PE=2 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 2.582e-20
Identity = 42/91 (46.15%), Postives = 54/91 (59.34%), Query Frame = -3
Query:  209 PQYFASKTPEDGHGPVRTGGGWFNDIWTPFFSSPPTVAMIVGTVLDNPLDPRDPVADRGLPWWKPFQPRRGDFRNEEFSSFPLRINEYIPP 481
            P+YF   + +  HGP  T  GWFND     F S P VA++V   LDN LD ++   DRGLPWW  F+  +GD RNEEF + P  +N + PP
Sbjct:  433 PEYFRDFSMKALHGPAHTNAGWFNDFLNTIFLSSPMVALMVAVFLDNTLDYKETARDRGLPWWAKFRTFKGDSRNEEFYTLPFNLNRFFPP 523          
BLAST of CN182028 vs. ExPASy Swiss-Prot
Match: NAT1_ARATH (Nucleobase-ascorbate transporter 1 OS=Arabidopsis thaliana GN=NAT1 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 4.557e-17
Identity = 38/91 (41.76%), Postives = 50/91 (54.95%), Query Frame = -3
Query:  209 PQYFASKTPEDGHGPVRTGGGWFNDIWTPFFSSPPTVAMIVGTVLDNPLDPRDPVADRGLPWWKPFQPRRGDFRNEEFSSFPLRINEYIPP 481
            PQ+FA       +G V T  GWFN      F SP TV +I+   +DN ++      DRG+PWW  F+  RGD RNEEF + P  +N + PP
Sbjct:  429 PQFFAQYWDARHYGLVHTNAGWFNAFLNTLFMSPATVGLIIAVFMDNTMEVERSKKDRGMPWWVKFRTFRGDNRNEEFYTLPFNLNRFFPP 519          
BLAST of CN182028 vs. ExPASy Swiss-Prot
Match: NAT6_ARATH (Nucleobase-ascorbate transporter 6 OS=Arabidopsis thaliana GN=NAT6 PE=2 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 2.262e-16
Identity = 44/92 (47.83%), Postives = 52/92 (56.52%), Query Frame = -3
Query:  212 PQYFASKTPEDGHGPVRTGGGWFNDIWTPFFSSPPTVAMIVGTVLDNPLDPRDPV--ADRGLPWWKPFQPRRGDFRNEEFSSFPLRINEYIP 481
            PQYF   T   G+GPV TG  WFND+    FSS P VA  V   LDN L  +D     DRG  WW  F+  +GD R+EEF S P  +N+Y P
Sbjct:  439 PQYFNEYTAIKGYGPVHTGARWFNDMVNVPFSSEPFVAGSVAFFLDNTLHKKDSSIRKDRGKHWWDKFRSFKGDTRSEEFYSLPFNLNKYFP 530          
BLAST of CN182028 vs. ExPASy Swiss-Prot
Match: NAT8_ARATH (Nucleobase-ascorbate transporter 8 OS=Arabidopsis thaliana GN=NAT8 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 2.501e-15
Identity = 42/92 (45.65%), Postives = 54/92 (58.70%), Query Frame = -3
Query:  212 PQYFASKTPEDGHGPVRTGGGWFNDIWTPFFSSPPTVAMIVGTVLDNPLDPRDPVA--DRGLPWWKPFQPRRGDFRNEEFSSFPLRINEYIP 481
            PQYF   T  + +GPVRT   WFN+I    FSS   V+ I+   LD  L P+D     DRGL WWK F+  + D R+EEF S PL +++Y P
Sbjct:  446 PQYFYQYTTLETYGPVRTSATWFNNIINVPFSSKAFVSGILAFFLDTTLPPKDKTTKKDRGLVWWKRFKSFQSDNRSEEFYSLPLNLSKYFP 537          
BLAST of CN182028 vs. ExPASy Swiss-Prot
Match: NAT7_ARATH (Nucleobase-ascorbate transporter 7 OS=Arabidopsis thaliana GN=NAT7 PE=2 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 8.894e-13
Identity = 38/92 (41.30%), Postives = 49/92 (53.26%), Query Frame = -3
Query:  212 PQYFASKTPEDGHGPVRTGGGWFNDIWTPFFSSPPTVAMIVGTVLDNPLDPRDPVA--DRGLPWWKPFQPRRGDFRNEEFSSFPLRINEYIP 481
            PQYF   T  + +GPV T   WFND+    FSS   VA I+   LD  +  +D     DRG+ WW  F   + D R+EEF S P  +N+Y P
Sbjct:  445 PQYFNQYTAVNKYGPVHTHARWFNDMINVPFSSKAFVAGILAFFLDVTMSSKDSATRKDRGMFWWDRFMSFKSDTRSEEFYSLPFNLNKYFP 536          
BLAST of CN182028 vs. ExPASy Swiss-Prot
Match: NAT5_ARATH (Nucleobase-ascorbate transporter 5 OS=Arabidopsis thaliana GN=NAT5 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 8.894e-13
Identity = 39/92 (42.39%), Postives = 47/92 (51.09%), Query Frame = -3
Query:  212 PQYFASKTPEDGHGPVRTGGGWFNDIWTPFFSSPPTVAMIVGTVLDNPLDPRDPV--ADRGLPWWKPFQPRRGDFRNEEFSSFPLRINEYIP 481
            PQYF   T   G+GPV TG  WFND+    FSS   V   V  +LD  L  +D     DRG  WW  F   + D R EEF + P  +N+Y P
Sbjct:  435 PQYFNEHTAIKGYGPVHTGARWFNDMVNVPFSSKAFVGGCVAYLLDTTLHKKDGSIRKDRGKHWWDRFWTFKNDPRTEEFYALPFNLNKYFP 526          
The following BLAST results are available for this feature:
BLAST of CN182028 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
NAT3_ARATH1.082e-2660.22Nucleobase-ascorbate transporter 3 OS=Arabidopsis ... [more]
NAT2_ARATH2.582e-2046.15Nucleobase-ascorbate transporter 2 OS=Arabidopsis ... [more]
NAT1_ARATH4.557e-1741.76Nucleobase-ascorbate transporter 1 OS=Arabidopsis ... [more]
NAT6_ARATH2.262e-1647.83Nucleobase-ascorbate transporter 6 OS=Arabidopsis ... [more]
NAT8_ARATH2.501e-1545.65Nucleobase-ascorbate transporter 8 OS=Arabidopsis ... [more]
NAT7_ARATH8.894e-1341.30Nucleobase-ascorbate transporter 7 OS=Arabidopsis ... [more]
NAT5_ARATH8.894e-1342.39Nucleobase-ascorbate transporter 5 OS=Arabidopsis ... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_0001N12_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001N12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182028 ID=CN182028; Name=CN182028; organism=Citrus sinensis; type=EST; length=483bp
TTTTTTTTTTTTTTGGCCCAATTTCTAGCCAGGTGGAACCTTGAGAAGGT
TAATGGAGAAAAACCTTCTGGTTCTAGCTTGGACATGGGAGTTTTTTTTT
TTCCGAATTAAATTGCACCCCCTCATACACGTTAAACATGAAAGTTGCTG
GAAGCATGGTGTTAACATACAAGCAGTTTAAAGTTTAAACTGGACTCTAA
AAAAATCTAGGGGGGATATACTCATTTATCCTAAGGGGAAAACTGGAAAA
CTCCTCATTTCTAAAGTCGCCCCTCCTGGGCTGGAAGGGTTTCCACCAGG
GGAGTCCTCTGTCGGCAACTGGATCTCTTGGATCAAGGGGGTTATCTAGC
ACTGTCCCAACGATCATTGCTACGGTTGGAGGTGATGAAAAAAATGGGGT
CCATATGTCATTAAACCATCCACCACCCGTTCTAACTGGCCCATGACCAT
CCTCAGGGGTTTTCGAGGCAAAGTATTGAGGAA
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