CN182026

Overview
NameCN182026
Unique NameCN182026
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length722
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN182026_ssr325 microsatellite CN182026_ssr325:325..336. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig13759 contig Csv1_Contig13759:548..1269. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN182026 vs. ExPASy Swiss-Prot
Match: GBLP_MEDSA (Guanine nucleotide-binding protein subunit beta-like protein OS=Medicago sativa GN=GB1 PE=2 SV=1)

HSP 1 Score: 283.493 bits (724), Expect = 7.841e-76
Identity = 138/169 (81.66%), Postives = 145/169 (85.80%), Query Frame = -2
Query:  215 PNTLQPTIVSASWDRSFKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYCTSLNWSADGSTLFSGYTDGVIRVWGIGRY 721
            P+T QPTIVSASWDR+ KVWNL+NCKLR TLAGH+GYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAG++IHALCFSPNRYWLCAATE SIKIWDLESKSIVEDLKVDL                    IYCTSLNWSADGSTLFSGYTDGV+RVWGIGRY
Sbjct:  159 PSTPQPTIVSASWDRTVKVWNLTNCKLRNTLAGHSGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGSIIHALCFSPNRYWLCAATESSIKIWDLESKSIVEDLKVDLKTEADAAIGGDTTTKKKV--IYCTSLNWSADGSTLFSGYTDGVVRVWGIGRY 325          
BLAST of CN182026 vs. ExPASy Swiss-Prot
Match: GBLP_ARATH (Guanine nucleotide-binding protein subunit beta-like protein OS=Arabidopsis thaliana GN=ARCA PE=1 SV=2)

HSP 1 Score: 282.722 bits (722), Expect = 1.337e-75
Identity = 137/169 (81.07%), Postives = 145/169 (85.80%), Query Frame = -2
Query:  215 PNTLQPTIVSASWDRSFKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYCTSLNWSADGSTLFSGYTDGVIRVWGIGRY 721
            PNTLQPTIVSASWD++ KVWNLSNCKLR+TLAGHTGYV+TVAVSPDGSLCASGGKDGV+LLWDLAEGK+LYSL+A +VIHALCFSPNRYWLCAATE  IKIWDLESKSIVEDLKVDL                    IYCTSLNWSADGSTLFSGYTDGVIRVWGIGRY
Sbjct:  160 PNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSVIHALCFSPNRYWLCAATEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKV-IYCTSLNWSADGSTLFSGYTDGVIRVWGIGRY 327          
BLAST of CN182026 vs. ExPASy Swiss-Prot
Match: GBLP_SOYBN (Guanine nucleotide-binding protein subunit beta-like protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 281.952 bits (720), Expect = 2.281e-75
Identity = 138/169 (81.66%), Postives = 144/169 (85.21%), Query Frame = -2
Query:  215 PNTLQPTIVSASWDRSFKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYCTSLNWSADGSTLFSGYTDGVIRVWGIGRY 721
            P+TLQPTIVSASWDR+ KVWNL+NCKLR TLAGH GYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAG++IHALCFSP+RYWLCAATEQSIKIWDLESKSIVEDLKVDL                    IYCTSLNWSADGSTLFSGYTDGV RVW IGRY
Sbjct:  159 PSTLQPTIVSASWDRTVKVWNLTNCKLRNTLAGHNGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGSIIHALCFSPSRYWLCAATEQSIKIWDLESKSIVEDLKVDLKTEADATSGGGNANKKKV--IYCTSLNWSADGSTLFSGYTDGVARVWAIGRY 325          
BLAST of CN182026 vs. ExPASy Swiss-Prot
Match: GBLP_BRANA (Guanine nucleotide-binding protein subunit beta-like protein OS=Brassica napus GN=GB1 PE=2 SV=1)

HSP 1 Score: 276.944 bits (707), Expect = 7.339e-74
Identity = 134/169 (79.29%), Postives = 145/169 (85.80%), Query Frame = -2
Query:  215 PNTLQPTIVSASWDRSFKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYCTSLNWSADGSTLFSGYTDGVIRVWGIGRY 721
            PNTLQPTIVSAS D++ KVWNLSNCKLR+TLAGHTGYV+TVAVSPDGSLCASGGKDGV+LLWDLAEGK+LYSL+A +VIHALCF+PNRYWLCAATEQ IKIWDLESK++VEDLKVDL                    IYCTSLNWSADGSTLFSGYTDGVIRVWGIGRY
Sbjct:  160 PNTLQPTIVSASCDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSVIHALCFTPNRYWLCAATEQGIKIWDLESKTVVEDLKVDLKAEAEKSDGSGTAATKRKV-IYCTSLNWSADGSTLFSGYTDGVIRVWGIGRY 327          
BLAST of CN182026 vs. ExPASy Swiss-Prot
Match: GBLP_NICPL (Guanine nucleotide-binding protein subunit beta-like protein OS=Nicotiana plumbaginifolia PE=2 SV=1)

HSP 1 Score: 274.633 bits (701), Expect = 3.642e-73
Identity = 130/169 (76.92%), Postives = 143/169 (84.62%), Query Frame = -2
Query:  215 PNTLQPTIVSASWDRSFKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYCTSLNWSADGSTLFSGYTDGVIRVWGIGRY 721
            PN LQPTIVS SWDR+ K+WNL+NCKLRATLAGHTGYVNT AVSPDGSLCASGGKDGVILLWDLAEGK+LYSL++G++IH+LCFSPNRYWLCAATE SIKIWDLESK+IV+DLKVDL                    IYCTSL WSADGSTLFSGYTDG+IRVWGIGR+
Sbjct:  160 PNNLQPTIVSGSWDRTVKIWNLTNCKLRATLAGHTGYVNTTAVSPDGSLCASGGKDGVILLWDLAEGKKLYSLESGSIIHSLCFSPNRYWLCAATESSIKIWDLESKTIVDDLKVDLKQESEMSAEGTASGKNKV--IYCTSLGWSADGSTLFSGYTDGLIRVWGIGRF 326          
BLAST of CN182026 vs. ExPASy Swiss-Prot
Match: GBLP_TOBAC (Guanine nucleotide-binding protein subunit beta-like protein OS=Nicotiana tabacum GN=ARCA PE=2 SV=1)

HSP 1 Score: 272.322 bits (695), Expect = 1.808e-72
Identity = 130/169 (76.92%), Postives = 142/169 (84.02%), Query Frame = -2
Query:  215 PNTLQPTIVSASWDRSFKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYCTSLNWSADGSTLFSGYTDGVIRVWGIGRY 721
            PN LQPTIVS SWDR+ K+WNL+NCKLR TLAGHTGYVNT AVSPDGSLCASGGKDGVILLWDLAEGK+LYSL++G++IH+LCFSPNRYWLCAATE SIKIWDLESKSIV+DLKVDL                    IYCTSL+WSADGSTLFSGYTDG+IRVWGI RY
Sbjct:  160 PNNLQPTIVSGSWDRTVKIWNLTNCKLRLTLAGHTGYVNTPAVSPDGSLCASGGKDGVILLWDLAEGKKLYSLESGSIIHSLCFSPNRYWLCAATESSIKIWDLESKSIVDDLKVDLKQESEMSSEGTASGKNKV--IYCTSLSWSADGSTLFSGYTDGLIRVWGIDRY 326          
BLAST of CN182026 vs. ExPASy Swiss-Prot
Match: GBLP_ORYSJ (Guanine nucleotide-binding protein subunit beta-like protein OS=Oryza sativa subsp. japonica GN=Os01g0686800 PE=1 SV=1)

HSP 1 Score: 249.21 bits (635), Expect = 1.639e-65
Identity = 118/169 (69.82%), Postives = 133/169 (78.70%), Query Frame = -2
Query:  215 PNTLQPTIVSASWDRSFKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYCTSLNWSADGSTLFSGYTDGVIRVWGIGRY 721
            PNT QPTIVS SWDR+ KVWNL+NCKLR  L GH GYVN VAVSPDGSLCASGGKDGV LLWDLAEGKRLYSLDAG++IH+LCFSPNRYWLCAAT+ SIKIWDLESK IV+DLK ++                    +YCTSLNWSADGSTL++GYTDG IR++ I  +
Sbjct:  175 PNTFQPTIVSGSWDRTVKVWNLTNCKLRCNLEGHGGYVNAVAVSPDGSLCASGGKDGVTLLWDLAEGKRLYSLDAGSIIHSLCFSPNRYWLCAATQDSIKIWDLESKHIVQDLKPEIPVSKNQM-------------LYCTSLNWSADGSTLYAGYTDGTIRIYKISGF 330          
BLAST of CN182026 vs. ExPASy Swiss-Prot
Match: GBLP_CHLRE (Guanine nucleotide-binding protein subunit beta-like protein OS=Chlamydomonas reinhardtii GN=GBLP PE=2 SV=1)

HSP 1 Score: 234.958 bits (598), Expect = 3.198e-61
Identity = 112/167 (67.07%), Postives = 123/167 (73.65%), Query Frame = -2
Query:  221 PNTLQPTIVSASWDRSFKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYCTSLNWSADGSTLFSGYTDGVIRVWGIG 721
            P T  P IVS  WD+  KVWNL+NCKL+  L GH GYVNTV VSPDGSLCASGGKDG+ +LWDLAEGKRLYSLDAG VIH LCFSPNRYWLCAAT+ SIKIWDLESKSIV+DL+ +                      YC SL WSADGSTL+SGYTDG IRVW +G
Sbjct:  160 PMTTNPIIVSGGWDKMVKVWNLTNCKLKNNLVGHHGYVNTVTVSPDGSLCASGGKDGIAMLWDLAEGKRLYSLDAGDVIHCLCFSPNRYWLCAATQSSIKIWDLESKSIVDDLRPEFNITSKKAQVP-----------YCVSLAWSADGSTLYSGYTDGQIRVWAVG 315          
BLAST of CN182026 vs. ExPASy Swiss-Prot
Match: GBLP_ORENI (Guanine nucleotide-binding protein subunit beta-2-like 1 OS=Oreochromis niloticus GN=gnb2l1 PE=2 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 2.899e-54
Identity = 101/166 (60.84%), Postives = 118/166 (71.08%), Query Frame = -2
Query:  224 PNTLQPTIVSASWDRSFKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYCTSLNWSADGSTLFSGYTDGVIRVWGI 721
            PN+  P IVS  WD+  KVWNL+NCKL+    GHTGY+NTV VSPDGSLCASGGKDG  +LWDL EGK LY+LD+G VI+ALCFSPNRYWLCAAT  SIKIWDLE K IV++L+ ++                      CTSL WSADG TLF+GYTD +IRVW +
Sbjct:  158 PNSSNPIIVSCGWDKMVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDSGDVINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELRQEVISTNSKAEPP-----------QCTSLAWSADGQTLFAGYTDNLIRVWQV 312          
BLAST of CN182026 vs. ExPASy Swiss-Prot
Match: GBLP_DANRE (Guanine nucleotide-binding protein subunit beta-2-like 1 OS=Danio rerio GN=gnb2l1 PE=2 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 2.899e-54
Identity = 101/166 (60.84%), Postives = 116/166 (69.88%), Query Frame = -2
Query:  224 PNTLQPTIVSASWDRSFKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYCTSLNWSADGSTLFSGYTDGVIRVWGI 721
            PN+  P IVS  WD+  KVWNL+NCKL+    GHTGY+NTV VSPDGSLCASGGKDG  +LWDL EGK LY+LD G  I+ALCFSPNRYWLCAAT  SIKIWDLE K IV++L+ D+                      CTSL WSADG TLF+GYTD +IRVW +
Sbjct:  158 PNSSNPIIVSCGWDKMVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDTINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELRQDIITTNSKAEPP-----------QCTSLAWSADGQTLFAGYTDNLIRVWQV 312          
The following BLAST results are available for this feature:
BLAST of CN182026 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
GBLP_MEDSA7.841e-7681.66Guanine nucleotide-binding protein subunit beta-li... [more]
GBLP_ARATH1.337e-7581.07Guanine nucleotide-binding protein subunit beta-li... [more]
GBLP_SOYBN2.281e-7581.66Guanine nucleotide-binding protein subunit beta-li... [more]
GBLP_BRANA7.339e-7479.29Guanine nucleotide-binding protein subunit beta-li... [more]
GBLP_NICPL3.642e-7376.92Guanine nucleotide-binding protein subunit beta-li... [more]
GBLP_TOBAC1.808e-7276.92Guanine nucleotide-binding protein subunit beta-li... [more]
GBLP_ORYSJ1.639e-6569.82Guanine nucleotide-binding protein subunit beta-li... [more]
GBLP_CHLRE3.198e-6167.07Guanine nucleotide-binding protein subunit beta-li... [more]
GBLP_ORENI2.899e-5460.84Guanine nucleotide-binding protein subunit beta-2-... [more]
GBLP_DANRE2.899e-5460.84Guanine nucleotide-binding protein subunit beta-2-... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001N11_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001N11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182026 ID=CN182026; Name=CN182026; organism=Citrus sinensis; type=EST; length=722bp
GCCCCTTTATGTAACATCTAAAAAATAATAAGCCAAACCAAAACAGCAGA
GGCCTCAAAGCCATATAAGATCCAAATAAAGAGAACAAAATATCCTTAAA
AACATTTTGAACAAAATCTTAAATCTTAAATAGGTCTGAAACTGCCTACA
AAGTCGAGAAACTAGTTTGTAATCGAAAAAGAACAGCAGTTTGCAATTAC
TCAAGCAGTTTTCAATAACGGCCAATACCCCAGACTCTGATCACACCATC
TGTATAACCACTGAACAAGGTGCTTCCATCAGCACTCCAGTTCAAGCTTG
TGCAGTAAATGTTCTTCTTTTTTATGGTGGTGGTGGCGGTGGTGGCCTCA
GATTTCTCGGCCTCGGTCTTAAGATCAACCTTAAGATCCTCGACAATGCT
CTTGCTCTCCAAATCCCAGATCTTTATACTCTGCTCAGTCGCCGCACACA
ACCAATACCTATTAGGACTGAAGCAGAGCGCGTGAATGACAGCACCAGCG
TCGAGCGAGTAGAGTCTTTTTCCCTCAGCCAAATCCCACAACAGAATCAC
ACCATCTTTCCCTCCACTGGCACACAACGAACCATCCGGCGACACTGCGA
CGGTGTTCACGTATCCAGTGTGCCCGGCAAGAGTAGCCCTAAGCTTGCAG
TTGCTCAAATTCCACACTTTGAACGAACGGTCCCACGAGGCGGAAACGAT
AGTGGGCTGAAGCGTGTTGGGG
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