CN182025

Overview
NameCN182025
Unique NameCN182025
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length629
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13482 contig Csv1_Contig13482:574..1202. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN182025 vs. ExPASy Swiss-Prot
Match: UPL1_ARATH (E3 ubiquitin-protein ligase UPL1 OS=Arabidopsis thaliana GN=UPL1 PE=1 SV=3)

HSP 1 Score: 262.692 bits (670), Expect = 1.112e-69
Identity = 126/141 (89.36%), Postives = 132/141 (93.62%), Query Frame = 3
Query:    6 LVPRELISIFNDKELELLISGLPEIDLDDLRANTEYTGYTAASTVVQWFWEVAKAFNKEDMARLLQFVTGTSKVPLEGFKALQGISGPQKFQIHKAYGAPERLPSAHTCFNQLDLPEYSSKEQLQERLLLAIHEASEGFGF 428
            L+PREL+SIFNDKELELLISGLPEID DDL+ANTEYT YTA S V+ WFWEV KAF+KEDMAR LQFVTGTSKVPLEGFKALQGISGPQ+ QIHKAYGAPERLPSAHTCFNQLDLPEY SKEQLQERLLLAIHEASEGFGF
Sbjct: 3540 LIPRELVSIFNDKELELLISGLPEIDFDDLKANTEYTSYTAGSPVIHWFWEVVKAFSKEDMARFLQFVTGTSKVPLEGFKALQGISGPQRLQIHKAYGAPERLPSAHTCFNQLDLPEYQSKEQLQERLLLAIHEASEGFGF 3680          
BLAST of CN182025 vs. ExPASy Swiss-Prot
Match: UPL2_ARATH (E3 ubiquitin-protein ligase UPL2 OS=Arabidopsis thaliana GN=UPL2 PE=1 SV=2)

HSP 1 Score: 258.07 bits (658), Expect = 2.739e-68
Identity = 122/141 (86.52%), Postives = 132/141 (93.62%), Query Frame = 3
Query:    6 LVPRELISIFNDKELELLISGLPEIDLDDLRANTEYTGYTAASTVVQWFWEVAKAFNKEDMARLLQFVTGTSKVPLEGFKALQGISGPQKFQIHKAYGAPERLPSAHTCFNQLDLPEYSSKEQLQERLLLAIHEASEGFGF 428
            L+PREL+SIFNDKELELLISGLPEID DDL+ANTEYT YT  S V++WFWEV KAF+KEDMAR LQFVTGTSKVPLEGFKALQGISGPQ+ QIHKAYG+PERLPSAHTCFNQLDLPEY SKEQ+QERLLLAIHEA+EGFGF
Sbjct: 3517 LIPRELVSIFNDKELELLISGLPEIDFDDLKANTEYTSYTVGSPVIRWFWEVVKAFSKEDMARFLQFVTGTSKVPLEGFKALQGISGPQRLQIHKAYGSPERLPSAHTCFNQLDLPEYQSKEQVQERLLLAIHEANEGFGF 3657          
BLAST of CN182025 vs. ExPASy Swiss-Prot
Match: PTR1_SCHPO (E3 ubiquitin-protein ligase ptr1 OS=Schizosaccharomyces pombe GN=ptr1 PE=1 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 5.737e-50
Identity = 91/141 (64.54%), Postives = 113/141 (80.14%), Query Frame = 3
Query:    6 LVPRELISIFNDKELELLISGLPEIDLDDLRANTEYTGYTAASTVVQWFWEVAKAFNKEDMARLLQFVTGTSKVPLEGFKALQGISGPQKFQIHKAYGAPERLPSAHTCFNQLDLPEYSSKEQLQERLLLAIHEASEGFGF 428
            ++P  LI IFN++ELELLISGLPEID+DD + NTEY GY  +S  VQWFW   ++F++E+ A+LLQF TGTSKVPL GFK L+G+SG Q+F IHK+YG+  RLP +HTCFNQLDLPEY + EQL+  LL AI+E SEGFGF
Sbjct: 3086 IIPSHLIQIFNEQELELLISGLPEIDIDDWKNNTEYHGYNVSSPQVQWFWRAVRSFDEEERAKLLQFATGTSKVPLNGFKELEGMSGFQRFNIHKSYGSLNRLPQSHTCFNQLDLPEYDTYEQLRSMLLTAINEGSEGFGF 3226          
BLAST of CN182025 vs. ExPASy Swiss-Prot
Match: TOM1_NEUCR (E3 ubiquitin-protein ligase TOM1-like OS=Neurospora crassa GN=B11B22.010 PE=3 SV=3)

HSP 1 Score: 191.43 bits (485), Expect = 3.148e-48
Identity = 86/141 (60.99%), Postives = 115/141 (81.56%), Query Frame = 3
Query:    6 LVPRELISIFNDKELELLISGLPEIDLDDLRANTEYTGYTAASTVVQWFWEVAKAFNKEDMARLLQFVTGTSKVPLEGFKALQGISGPQKFQIHKAYGAPERLPSAHTCFNQLDLPEYSSKEQLQERLLLAIHEASEGFGF 428
            ++P ELI+IFN++ELELLISGLP+ID+DD +ANTEY  Y+A +  +QWFW   ++F+KE++A+LLQFVTGTSKVPL GFK L+G++G  +F IH+ YG+ +RLPS+HTCFNQLDLPEY + E L+ +LL AI   S+ FGF
Sbjct: 3885 IIPEELIAIFNEQELELLISGLPDIDIDDWKANTEYHNYSAGAPQIQWFWRAVRSFDKEELAKLLQFVTGTSKVPLNGFKELEGMNGVSRFNIHRDYGSKDRLPSSHTCFNQLDLPEYENYETLRSQLLKAITAGSDYFGF 4025          
BLAST of CN182025 vs. ExPASy Swiss-Prot
Match: HUWE1_RAT (E3 ubiquitin-protein ligase HUWE1 (Fragment) OS=Rattus norvegicus GN=Huwe1 PE=1 SV=2)

HSP 1 Score: 186.808 bits (473), Expect = 7.754e-47
Identity = 88/140 (62.86%), Postives = 112/140 (80.00%), Query Frame = 3
Query:    6 LVPRELISIFNDKELELLISGLPEIDLDDLRANTEYTGYTAASTVVQWFWEVAKAFNKEDMARLLQFVTGTSKVPLEGFKALQGISGPQKFQIHKAYGAPERLPSAHTCFNQLDLPEYSSKEQLQERLLLAIHEASEGFG 425
            ++P+ LISIF ++ELELLISGLP ID+DDL++NTEY  Y + S  +QWFW   ++F++ D A+ LQFVTGTSKVPL+GF AL+G++G QKFQIH+   + +RLPSAHTCFNQLDLP Y S E+L+  LLLAI E SEGFG
Sbjct:  181 IIPKRLISIFTEQELELLISGLPTIDIDDLKSNTEYHKYQSNSIQIQWFWRALRSFDQADRAKFLQFVTGTSKVPLQGFAALEGMNGIQKFQIHRDDRSTDRLPSAHTCFNQLDLPAYESFEKLRHMLLLAIQECSEGFG 320          
BLAST of CN182025 vs. ExPASy Swiss-Prot
Match: HUWE1_MOUSE (E3 ubiquitin-protein ligase HUWE1 OS=Mus musculus GN=Huwe1 PE=1 SV=4)

HSP 1 Score: 186.808 bits (473), Expect = 7.754e-47
Identity = 88/140 (62.86%), Postives = 112/140 (80.00%), Query Frame = 3
Query:    6 LVPRELISIFNDKELELLISGLPEIDLDDLRANTEYTGYTAASTVVQWFWEVAKAFNKEDMARLLQFVTGTSKVPLEGFKALQGISGPQKFQIHKAYGAPERLPSAHTCFNQLDLPEYSSKEQLQERLLLAIHEASEGFG 425
            ++P+ LISIF ++ELELLISGLP ID+DDL++NTEY  Y + S  +QWFW   ++F++ D A+ LQFVTGTSKVPL+GF AL+G++G QKFQIH+   + +RLPSAHTCFNQLDLP Y S E+L+  LLLAI E SEGFG
Sbjct: 4236 IIPKRLISIFTEQELELLISGLPTIDIDDLKSNTEYHKYQSNSIQIQWFWRALRSFDQADRAKFLQFVTGTSKVPLQGFAALEGMNGIQKFQIHRDDRSTDRLPSAHTCFNQLDLPAYESFEKLRHMLLLAIQECSEGFG 4375          
BLAST of CN182025 vs. ExPASy Swiss-Prot
Match: HUWE1_HUMAN (E3 ubiquitin-protein ligase HUWE1 OS=Homo sapiens GN=HUWE1 PE=1 SV=3)

HSP 1 Score: 186.808 bits (473), Expect = 7.754e-47
Identity = 88/140 (62.86%), Postives = 112/140 (80.00%), Query Frame = 3
Query:    6 LVPRELISIFNDKELELLISGLPEIDLDDLRANTEYTGYTAASTVVQWFWEVAKAFNKEDMARLLQFVTGTSKVPLEGFKALQGISGPQKFQIHKAYGAPERLPSAHTCFNQLDLPEYSSKEQLQERLLLAIHEASEGFG 425
            ++P+ LISIF ++ELELLISGLP ID+DDL++NTEY  Y + S  +QWFW   ++F++ D A+ LQFVTGTSKVPL+GF AL+G++G QKFQIH+   + +RLPSAHTCFNQLDLP Y S E+L+  LLLAI E SEGFG
Sbjct: 4233 IIPKRLISIFTEQELELLISGLPTIDIDDLKSNTEYHKYQSNSIQIQWFWRALRSFDQADRAKFLQFVTGTSKVPLQGFAALEGMNGIQKFQIHRDDRSTDRLPSAHTCFNQLDLPAYESFEKLRHMLLLAIQECSEGFG 4372          
BLAST of CN182025 vs. ExPASy Swiss-Prot
Match: TOM1_ASHGO (Probable E3 ubiquitin-protein ligase TOM1 OS=Ashbya gossypii GN=TOM1 PE=3 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 5.557e-45
Identity = 83/140 (59.29%), Postives = 109/140 (77.86%), Query Frame = 3
Query:    6 LVPRELISIFNDKELELLISGLPEIDLDDLRANTEYTGYTAASTVVQWFWEVAKAFNKEDMARLLQFVTGTSKVPLEGFKALQGISGPQKFQIHKAYGAPERLPSAHTCFNQLDLPEYSSKEQLQERLLLAIHEASEGFG 425
            ++P++LISIF+++ELELL+SGLP+ID+DD + NT Y  YT     + +FW   ++F+KE+ A+LLQFVTGTSKVPL GFK L G++G  KF IH+ YG+ +RLPS+HTCFNQLDLP Y S E L+  LLLAI+E  EGFG
Sbjct: 3117 IIPKDLISIFDEQELELLVSGLPDIDVDDWKNNTIYVNYTPTCKQINYFWRAVRSFDKEERAKLLQFVTGTSKVPLNGFKELSGVNGISKFSIHRDYGSIDRLPSSHTCFNQLDLPAYDSYETLRGSLLLAINEGHEGFG 3256          
BLAST of CN182025 vs. ExPASy Swiss-Prot
Match: TOM1_YEAST (E3 ubiquitin-protein ligase TOM1 OS=Saccharomyces cerevisiae GN=TOM1 PE=1 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 1.369e-43
Identity = 83/140 (59.29%), Postives = 108/140 (77.14%), Query Frame = 3
Query:    6 LVPRELISIFNDKELELLISGLPEIDLDDLRANTEYTGYTAASTVVQWFWEVAKAFNKEDMARLLQFVTGTSKVPLEGFKALQGISGPQKFQIHKAYGAPERLPSAHTCFNQLDLPEYSSKEQLQERLLLAIHEASEGFG 425
            L+ ++LI+IF+++ELELLISGLP+ID+DD + NT Y  YTA    V +FW   ++F+ E+ A+LLQFVTGTSKVPL GFK L G++G  KF IH+ +G+ ERLPS+HTCFNQL+LP Y S E L+  LLLAI+E  EGFG
Sbjct: 3127 LISKDLITIFDEQELELLISGLPDIDVDDWKNNTTYVNYTATCKEVSYFWRAVRSFDAEERAKLLQFVTGTSKVPLNGFKELSGVNGVCKFSIHRDFGSSERLPSSHTCFNQLNLPPYESYETLRGSLLLAINEGHEGFG 3266          
BLAST of CN182025 vs. ExPASy Swiss-Prot
Match: PUB3_SCHPO (E3 ubiquitin-protein ligase pub3 OS=Schizosaccharomyces pombe GN=pub3 PE=2 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 2.261e-38
Identity = 72/140 (51.43%), Postives = 106/140 (75.71%), Query Frame = 3
Query:    6 LVPRELISIFNDKELELLISGLPEIDLDDLRANTEYTGYTAASTVVQWFWEVAKAFNKEDMARLLQFVTGTSKVPLEGFKALQGISGPQKFQIHKAYGAPERLPSAHTCFNQLDLPEYSSKEQLQERLLLAIHEASEGFG 425
            LV  +L+++F+++ELELLI G+ ++D++D +++TEY  Y A   V++WFWE+   +  ED ++LLQF TGTS++P+ GF+ LQG  GP+KF I KA G P++LP AHTCFN+LDLP+Y SK+ L E+L LA+ E + GFG
Sbjct:  647 LVSPDLVNVFDERELELLIGGISDVDVEDWKSHTEYRTYIATDPVIKWFWEIIAGWKNEDRSKLLQFATGTSRIPVNGFRDLQGSDGPRKFTIEKA-GTPDQLPVAHTCFNRLDLPDYPSKDTLHEKLSLAV-ENTVGFG 784          
The following BLAST results are available for this feature:
BLAST of CN182025 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 76
Match NameE-valueIdentityDescription
UPL1_ARATH1.112e-6989.36E3 ubiquitin-protein ligase UPL1 OS=Arabidopsis th... [more]
UPL2_ARATH2.739e-6886.52E3 ubiquitin-protein ligase UPL2 OS=Arabidopsis th... [more]
PTR1_SCHPO5.737e-5064.54E3 ubiquitin-protein ligase ptr1 OS=Schizosaccharo... [more]
TOM1_NEUCR3.148e-4860.99E3 ubiquitin-protein ligase TOM1-like OS=Neurospor... [more]
HUWE1_RAT7.754e-4762.86E3 ubiquitin-protein ligase HUWE1 (Fragment) OS=Ra... [more]
HUWE1_MOUSE7.754e-4762.86E3 ubiquitin-protein ligase HUWE1 OS=Mus musculus ... [more]
HUWE1_HUMAN7.754e-4762.86E3 ubiquitin-protein ligase HUWE1 OS=Homo sapiens ... [more]
TOM1_ASHGO5.557e-4559.29Probable E3 ubiquitin-protein ligase TOM1 OS=Ashby... [more]
TOM1_YEAST1.369e-4359.29E3 ubiquitin-protein ligase TOM1 OS=Saccharomyces ... [more]
PUB3_SCHPO2.261e-3851.43E3 ubiquitin-protein ligase pub3 OS=Schizosaccharo... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001N10_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001N10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182025 ID=CN182025; Name=CN182025; organism=Citrus sinensis; type=EST; length=629bp
GAGGATTGGTTCCGCGGGAACTTATTTCAATATTTAATGACAAAGAGCTA
GAGCTCCTAATCAGTGGGCTTCCTGAGATTGATTTGGATGACTTAAGGGC
CAATACCGAATACACTGGCTATACAGCAGCATCTACTGTTGTCCAGTGGT
TTTGGGAGGTTGCTAAAGCTTTCAACAAAGAAGACATGGCTAGACTGCTT
CAATTTGTCACTGGAACTTCAAAGGTTCCACTGGAGGGTTTCAAGGCATT
GCAGGGTATCTCTGGTCCCCAGAAGTTCCAGATTCACAAGGCATATGGAG
CCCCTGAGCGGCTGCCTTCGGCTCATACATGCTTCAATCAACTAGATCTT
CCTGAGTATTCGTCCAAGGAACAGCTTCAAGAGCGCTTGTTGCTTGCTAT
ACATGAAGCCAGTGAAGGTTTTGGCTTTGGTTAAATATTCTTTTACGTCA
GTGTTGCGCCAGCAGCACCAGCCGTCAGACTCCACATTTCCATGTACATA
AGCCAACTGATTCGGGTAGATAGAAATATCGATAAGTTGGGGGACAAGCC
GCAAATCATTGTCAAAATCAGATTGTAGAGGGATTCCTGGAAGTATCTCG
GCATAACCGCAATGGTAGTTATGCTTTGA
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