CN188847

Overview
NameCN188847
Unique NameCN188847
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length550
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6726 contig Csv1_Contig6726:39..588. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CN188847 vs. ExPASy Swiss-Prot
Match: ATL1O_ARATH (RING-H2 finger protein ATL1O OS=Arabidopsis thaliana GN=ATL1O PE=2 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 1.595e-12
Identity = 53/180 (29.44%), Postives = 82/180 (45.56%), Query Frame = 3 
Query:   45 RHRKFIKYSINEA-ATADICPSYCD-LSDTSSFCSPPCLT---SCPSYCHNFLQSLIPTPSPVTFKYHIHHKSRKFLIITASALVTTIVAVLC--YVVFVKFY---LRRRSSSEPRILNETHDDFLDEDHGP--VVDHPIWYINTVGLQSSVIREIAVLKYKKSDGLVEGTECSVCLSEF 548
            +HRK      +E   T D     CD +   + +  P   T     P +  +   S  P+PS           S     I+   +   ++A+L   + +  KF+   + R +    +  NE +D  ++E+      VDHPIW I T GLQ S+I  I +  YK+ DGL+E T+C VCL+EF
Sbjct:    5 KHRKLFPTLASETNKTLDCSNGVCDPICPYNCYPEPDYYTISPQLPPWSSSPQPSPCPSPSISAVYLPSQDSSSSLDAISIITITGAVLAILLTGFFLVAKFFSDSVNRVNQGTYQSDNEDNDTVMEEEFQDREQVDHPIWLIRTTGLQQSIINSITICNYKRGDGLIERTDCPVCLNEF 184
The following BLAST results are available for this feature:
BLAST of CN188847 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
ATL1O_ARATH1.595e-1229.44RING-H2 finger protein ATL1O OS=Arabidopsis thalia... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0006O09_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006O09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188847 ID=CN188847; Name=CN188847; organism=Citrus sinensis; type=EST; length=550bp
ATTTAAGGGTTCATTTTCTTGATAACATGGAGTTGCAGCCCCTTCGACAT
AGAAAGTTCATAAAATATTCAATCAACGAGGCAGCAACGGCAGATATATG
TCCATCATATTGTGACTTATCTGATACATCAAGCTTTTGTAGCCCACCAT
GTTTAACTTCTTGTCCAAGCTACTGCCACAATTTTTTGCAATCCCTAATC
CCTACTCCCAGTCCAGTGACATTCAAATATCATATTCATCACAAATCTCG
CAAGTTCTTGATCATTACAGCCTCAGCTCTGGTTACAACGATTGTTGCAG
TTTTATGTTATGTTGTTTTTGTTAAGTTCTATTTAAGAAGGAGATCATCA
TCGGAGCCGCGAATACTAAACGAAACCCATGATGATTTTCTTGATGAGGA
TCATGGCCCTGTGGTTGATCACCCAATCTGGTACATCAACACCGTTGGTC
TGCAGTCATCGGTCATTAGAGAGATCGCTGTTTTGAAGTATAAAAAAAGT
GATGGTCTTGTTGAAGGAACAGAGTGCTCTGTTTGCTTGAGTGAGTTTCA
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