CN182018

Overview
NameCN182018
Unique NameCN182018
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length750
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2298 contig Csv1_Contig2298:1..754. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN182018 vs. ExPASy Swiss-Prot
Match: ADRO_SALFO (NADPH:adrenodoxin oxidoreductase, mitochondrial OS=Salvelinus fontinalis GN=fdxr PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.564e-29
Identity = 69/147 (46.94%), Postives = 95/147 (64.63%), Query Frame = -1
Query:  262 MVLKSIGYKSVPVN-GLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVGSISEDLEQGVLASSSGLPKPGREGLLQLLDNRNVRPVPFSAWEKIDSEEKRLGSLRNKPKEKLTTYEDLLKVA 699
            +V+ SIGYKS+P++  +PFD  K I+PN  GRV         Q   GLY  GW+KRGPTG+IAT +  + +T  ++ +D+ +G L  SS   KPG +G+  LL+ R V+PV FS WEKIDSEE R G  R KP+EK+    ++L+VA
Sbjct:  361 LVISSIGYKSLPIDPAVPFDGRKAIIPNTMGRV---------QQTAGLYCSGWVKRGPTGVIATTMNDSFDTARTLLQDIGKGTLDVSS--VKPGSQGVSALLEKRGVKPVSFSDWEKIDSEETRRGETRGKPREKMLDVGEMLQVA 496          
BLAST of CN182018 vs. ExPASy Swiss-Prot
Match: ADRO_HUMAN (NADPH:adrenodoxin oxidoreductase, mitochondrial OS=Homo sapiens GN=FDXR PE=1 SV=3)

HSP 1 Score: 117.472 bits (293), Expect = 8.032e-26
Identity = 64/146 (43.84%), Postives = 91/146 (62.33%), Query Frame = -1
Query:  265 MVLKSIGYKSVPVN-GLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVGSISEDLEQGVLASSSGLPKPGREGLLQLLDNRNVRPVPFSAWEKIDSEEKRLGSLRNKPKEKLTTYEDLLKV 699
            +VL SIGYKS PV+  +PFD+  G++PN+ GRV+            GLY  GW+KRGPTG+IAT +  +  T   + +DL+ G+L S    P+PG   +  LL +R VRPV FS WEK+D+EE   G    KP+EKL   +++L++
Sbjct:  355 LVLSSIGYKSRPVDPSVPFDSKLGVIPNVEGRVMD---------VPGLYCSGWVKRGPTGVIATTMTDSFLTGQMLLQDLKAGLLPSG---PRPGYAAIQALLSSRGVRPVSFSDWEKLDAEEVARGQGTGKPREKLVDPQEMLRL 488          
BLAST of CN182018 vs. ExPASy Swiss-Prot
Match: ADRO_MOUSE (NADPH:adrenodoxin oxidoreductase, mitochondrial OS=Mus musculus GN=Fdxr PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.986e-25
Identity = 63/146 (43.15%), Postives = 90/146 (61.64%), Query Frame = -1
Query:  265 MVLKSIGYKSVPVN-GLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVGSISEDLEQGVLASSSGLPKPGREGLLQLLDNRNVRPVPFSAWEKIDSEEKRLGSLRNKPKEKLTTYEDLLKV 699
            ++L S+GYKS P++  +PFD   G++PN  GRV+ N+ G        LY  GW+KRGPTG+I T +  +  T  ++ EDL+ G+L S    P+PG   +  LL NR VRPV FS WEK+D+EE   G    KP+EKL    ++L++
Sbjct:  358 LLLSSVGYKSRPIDPSVPFDPKLGVIPNTEGRVV-NVPG--------LYCSGWVKRGPTGVITTTMTDSFLTSQALLEDLKAGLLPSG---PRPGYVAIQALLSNRGVRPVSFSDWEKLDAEEVSRGQGTGKPREKLVDRREMLRL 491          
BLAST of CN182018 vs. ExPASy Swiss-Prot
Match: ADRO_RAT (NADPH:adrenodoxin oxidoreductase, mitochondrial OS=Rattus norvegicus GN=Fdxr PE=1 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 7.518e-24
Identity = 61/146 (41.78%), Postives = 87/146 (59.59%), Query Frame = -1
Query:  265 MVLKSIGYKSVPVN-GLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVGSISEDLEQGVLASSSGLPKPGREGLLQLLDNRNVRPVPFSAWEKIDSEEKRLGSLRNKPKEKLTTYEDLLKV 699
            ++L S+GYKS P++  +PFD   GI+PN  GRV+            GLY  GW+KRGPTG+I T +  +  T   + +DL+ G+L S    P+PG   +  LL +R VRPV FS WEK+D+EE   G    KP+EKL    ++L++
Sbjct:  358 LLLSSVGYKSRPIDPSVPFDPKLGIIPNTEGRVVN---------APGLYCSGWVKRGPTGVITTTMTDSFLTSQVLLKDLKAGLLPSG---PRPGYTAIQALLSDRGVRPVSFSDWEKLDAEEVARGQGTGKPREKLVDRREMLQL 491          
BLAST of CN182018 vs. ExPASy Swiss-Prot
Match: ADRO_BOVIN (NADPH:adrenodoxin oxidoreductase, mitochondrial OS=Bos taurus GN=FDXR PE=1 SV=3)

HSP 1 Score: 110.923 bits (276), Expect = 7.518e-24
Identity = 63/146 (43.15%), Postives = 88/146 (60.27%), Query Frame = -1
Query:  265 MVLKSIGYKSVPVN-GLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVGSISEDLEQGVLASSSGLPKPGREGLLQLLDNRNVRPVPFSAWEKIDSEEKRLGSLRNKPKEKLTTYEDLLKV 699
            +VL SIGYKS P++  +PFD   G+VPN+ GRV+            GLY  GW+KRGPTG+I T +  +  T   + +DL+ G L S    P+PG   +  LLD+R V PV FS WEK+D+EE   G    KP+EKL   +++L++
Sbjct:  356 LVLSSIGYKSRPIDPSVPFDPKLGVVPNMEGRVVD---------VPGLYCSGWVKRGPTGVITTTMTDSFLTGQILLQDLKAGHLPSG---PRPGSAFIKALLDSRGVWPVSFSDWEKLDAEEVSRGQASGKPREKLLDPQEMLRL 489          
BLAST of CN182018 vs. ExPASy Swiss-Prot
Match: ADRO_DROME (NADPH:adrenodoxin oxidoreductase, mitochondrial OS=Drosophila melanogaster GN=dare PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 8.602e-20
Identity = 57/147 (38.78%), Postives = 86/147 (58.50%), Query Frame = -1
Query:  262 MVLKSIGYKSVPVN-GLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVGSISEDLEQGVLASSSGLPKPGREGLLQLLDNRNVRPVPFSAWEKIDSEEKRLGSLRNKPKEKLTTYEDLLKVA 699
            ++L+SIGYKS  V+ G+ FD  +G V NI GR+LK+ +  + +V+ GLYV GWL  GPTG+I T +  A     +I +D+    L +SS   KPG        D    R V +  W++I+  E   G  + KP+EK+ + E++L+VA
Sbjct:  329 LILRSIGYKSSCVDTGINFDTRRGRVHNINGRILKDDA--TGEVDPGLYVAGWLGTGPTGVIVTTMNGAFAVAKTICDDINTNALDTSS--VKPG-------YDADGKRVVTWDGWQRINDFESAAGKAKGKPREKIVSIEEMLRVA 464          
BLAST of CN182018 vs. ExPASy Swiss-Prot
Match: FPRB_MYCTU (Probable ferredoxin/ferredoxin--NADP reductase OS=Mycobacterium tuberculosis GN=fprB PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 7.282e-19
Identity = 54/147 (36.73%), Postives = 75/147 (51.02%), Query Frame = -1
Query:  259 MVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVGSISEDLEQGVLASSSGLPKPGREGLLQLLDNRNVRPVPFSAWEKIDSEEKRLGSLRNKPKEKLTTYEDLLKVAT 699
            +VL SIGY+  P+  LPFD    +VPN  GRV+   +G+      G YV GW+KRGPTG I TN  C+ +TV ++  D   G L      P      L QL+  R  + +  + W  ID+ E   GS   + + K T   ++L  AT
Sbjct:  408 LVLTSIGYRGKPIPDLPFDEQAALVPNDGGRVIDPGTGEPVP---GAYVAGWIKRGPTGFIGTNKSCSMQTVQALVADFNDGRLTDPVATP----TALDQLVQARQPQAIGCAGWRAIDAAEIARGSADGRVRNKFTDVAEMLAAAT 547          
BLAST of CN182018 vs. ExPASy Swiss-Prot
Match: FPRB_MYCBO (Probable ferredoxin/ferredoxin--NADP reductase OS=Mycobacterium bovis GN=fprB PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 7.282e-19
Identity = 54/147 (36.73%), Postives = 75/147 (51.02%), Query Frame = -1
Query:  259 MVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVGSISEDLEQGVLASSSGLPKPGREGLLQLLDNRNVRPVPFSAWEKIDSEEKRLGSLRNKPKEKLTTYEDLLKVAT 699
            +VL SIGY+  P+  LPFD    +VPN  GRV+   +G+      G YV GW+KRGPTG I TN  C+ +TV ++  D   G L      P      L QL+  R  + +  + W  ID+ E   GS   + + K T   ++L  AT
Sbjct:  408 LVLTSIGYRGKPIPDLPFDEQAALVPNDGGRVIDPGTGEPVP---GAYVAGWIKRGPTGFIGTNKSCSMQTVQALVADFNDGRLTDPVATP----TALDQLVQARQPQAIGCAGWRAIDAAEIARGSADGRVRNKFTDVAEMLAAAT 547          
BLAST of CN182018 vs. ExPASy Swiss-Prot
Match: FPRA_MYCTU (NADPH-ferredoxin reductase fprA OS=Mycobacterium tuberculosis GN=fprA PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.242e-18
Identity = 52/151 (34.44%), Postives = 87/151 (57.62%), Query Frame = -1
Query:  265 P*LMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVGSISEDL---EQGVLASSSGLPKPGREGLLQLLDNRNVRPVPFSAWEKIDSEEKRLGSLRNKPKEKLTTYEDLLKV 708
            P  +V++S+GY+ VP  GLPFD+  G +PN+ GR    I+G  ++     YV GW+KRGPTG+I TN   A++TV ++ ++L   ++G  A     P+   + +   L  R  + V  + W+ ID+ E+  G    +P+ KL +  +LL++
Sbjct:  314 PAQLVVRSVGYRGVPTPGLPFDDQSGTIPNVGGR----INGSPNE-----YVVGWIKRGPTGVIGTNKKDAQDTVDTLIKNLGNAKEG--AECKSFPEDHADQVADWLAARQPKLVTSAHWQVIDAFERAAGEPHGRPRVKLASLAELLRI 453          
BLAST of CN182018 vs. ExPASy Swiss-Prot
Match: FPRB_MYCLE (Probable ferredoxin/ferredoxin--NADP reductase OS=Mycobacterium leprae GN=fprB PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.614e-18
Identity = 53/146 (36.30%), Postives = 71/146 (48.63%), Query Frame = -1
Query:  262 MVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVGSISEDLEQGVLASSSGLPKPGREGLLQLLDNRNVRPVPFSAWEKIDSEEKRLGSLRNKPKEKLTTYEDLLKVA 699
            +VL S+GY+   +  LPFD    ++PN  GRV+    G       G YV GW+KRGPTG I TN  C+ +TV ++  D   G L      P      L +L+  R    V    W  ID+ E   GS   +P+ K T   D+L VA
Sbjct:  405 LVLTSVGYRGKRIRDLPFDEEAAVIPNDGGRVVDPSRGRPMP---GAYVAGWIKRGPTGFIGTNKLCSVQTVQAVVADFNAGWLTDPVAEPAE----LAKLVHARQPDTVDSVGWRAIDAAEIAQGSTEGRPRRKFTDVADMLAVA 543          
The following BLAST results are available for this feature:
BLAST of CN182018 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
ADRO_SALFO1.564e-2946.94NADPH:adrenodoxin oxidoreductase, mitochondrial OS... [more]
ADRO_HUMAN8.032e-2643.84NADPH:adrenodoxin oxidoreductase, mitochondrial OS... [more]
ADRO_MOUSE3.986e-2543.15NADPH:adrenodoxin oxidoreductase, mitochondrial OS... [more]
ADRO_RAT7.518e-2441.78NADPH:adrenodoxin oxidoreductase, mitochondrial OS... [more]
ADRO_BOVIN7.518e-2443.15NADPH:adrenodoxin oxidoreductase, mitochondrial OS... [more]
ADRO_DROME8.602e-2038.78NADPH:adrenodoxin oxidoreductase, mitochondrial OS... [more]
FPRB_MYCTU7.282e-1936.73Probable ferredoxin/ferredoxin--NADP reductase OS=... [more]
FPRB_MYCBO7.282e-1936.73Probable ferredoxin/ferredoxin--NADP reductase OS=... [more]
FPRA_MYCTU1.242e-1834.44NADPH-ferredoxin reductase fprA OS=Mycobacterium t... [more]
FPRB_MYCLE3.614e-1836.30Probable ferredoxin/ferredoxin--NADP reductase OS=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_0001N07_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001N07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182018 ID=CN182018; Name=CN182018; organism=Citrus sinensis; type=EST; length=750bp
TTTTTTTTTTTTTACAAACAAAATCTTTGTTTTATTATAAAATTCATTAA
TCTTTCATAATGAAGGAAGAAAACTGAATAATCCATAAAGCTCCTTACAA
AGATCAAAGATCTCCATGGGATGTGAGAAAATTATGTATAAAAAAAATGT
GTTCCGTCTTATATTGTAATTGCCAAAGGTTAAAATGATAAATGTACGAA
AGAGGAGTGTTTTGAGAATTTTAAAGGATGGGAAAATCTCCACTCTTTTA
ATTAATTATGTGGCTACTTTCAGCAAATCTTCATAAGTTGTCAATTTCTC
CTTTGGTTTGTTCCTCAAACTTCCAAGCCTCTTTTCTTCAGAGTCAATCT
TTTCCCAAGCACTGAATGGTACAGGTCTAACATTTCTATTGTCCAGTAAC
TGCAGGAGTCCCTCTCGGCCAGGCTTTGGCAATCCTGATGAGGACGCTAG
TACTCCTTGTTCAAGGTCTTCCGATATGCTACCAACAGTTTCCTCAGCAC
AGTAAAGATTTGTGGCAATTATTCCCGTTGGTCCTCTCTTTAACCACCCA
CAGACATATAAACCATTTTCAACCTGTGAAGAATCTCCTGAAATATTCTT
TAGAACCCGACCTCTAATATTTGGAACTATACCTTTGTGATTATCAAAGG
GCAAACCATTGACTGGTACTGATTTGTAACCAATGCTTTTTAGCACCATC
AATCAAGGTCTTCAAATTCACCAGTACCCACAGCATACTGTTTTCCAGGG
back to top