CN188846
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CN188846 vs. ExPASy Swiss-Prot
Match: HS21C_SOLLC (Small heat shock protein, chloroplastic OS=Solanum lycopersicum GN=HSP21 PE=2 SV=1) HSP 1 Score: 253.062 bits (645), Expect = 1.252e-66 Identity = 133/209 (63.64%), Postives = 154/209 (73.68%), Query Frame = 1 Query: 73 APCSVTLPATSRKGAYRLQAVRAQAGGENKDTSVDVHVNSG----NQGTQAERRPRRTALDILPFGLMDPSFPTRTMRQMLDTMDRLLEDTMAFPGRSRAGGGGQVRTPWDIKEEENEIKMRFDMPGLXXXXXXXXXXXXXLVIKGEHRAEEAGGDPSWSGASFSSYDTRLQLPDNCEKDKVKAELKNGVLYISIPKTNVERKVIDVQI 687 APCSV +P+ R+ RL A +A G+NKDTSVDVH +S NQGT ERRP R ALD+ PFG++DP P RTMRQM+DTMDRL EDTM FPGR+RA G G++RTPWDI ++ENEIKMRFDMPGL LVIKGEH+ EE G D G ++SSYDTRL LPDN KDK+KAELKNGVL+ISIPKT VE+KVIDVQI Sbjct: 30 APCSVFVPSM-RRPTTRLVA---RATGDNKDTSVDVHHSSAQGGNNQGTAVERRPTRMALDVSPFGVLDPMSPMRTMRQMIDTMDRLFEDTMTFPGRNRASGTGEIRTPWDIHDDENEIKMRFDMPGLSKEDVKVSVENDMLVIKGEHKKEEDGRDKHSWGRNYSSYDTRLSLPDNVVKDKIKAELKNGVLFISIPKTEVEKKVIDVQI 234
BLAST of CN188846 vs. ExPASy Swiss-Prot
Match: HS22C_PETHY (Small heat shock protein, chloroplastic OS=Petunia hybrida GN=HSP22 PE=2 SV=1) HSP 1 Score: 249.595 bits (636), Expect = 1.384e-65 Identity = 136/217 (62.67%), Postives = 156/217 (71.89%), Query Frame = 1 Query: 61 RRNVAPCSVTLPATS---RKGAYRLQAVRAQAGGENKDTSVDVHVNSGNQG-----TQAERRPRRTALDILPFGLMDPSFPTRTMRQMLDTMDRLLEDTMAFPGRSRAGGGGQVRTPWDIKEEENEIKMRFDMPGLXXXXXXXXXXXXXLVIKGEHRAEEAGGDPSWSGASFSSYDTRLQLPDNCEKDKVKAELKNGVLYISIPKTNVERKVIDVQI 687 + AP SV P + RK A RL A QA G+NKDTSVDVHV++ NQG + ERRPRR ALD+ PFGL+DP P RTMRQM+DTMDRL EDTM FPG SR G G++R PWDIK++ENEIKMRFDMPGL LVIKGEH+ EE+G D SW G ++SSYDTRL LPDN +KDKVKAELKNGVL ISIPKT VE+KV DV+I Sbjct: 29 KTTTAPFSVCFPYSKCSVRKPASRLVA---QATGDNKDTSVDVHVSNNNQGGNNQGSAVERRPRRMALDVSPFGLLDPMSPMRTMRQMMDTMDRLFEDTMTFPG-SRNRGTGEIRAPWDIKDDENEIKMRFDMPGLSKEEVKVSVEDDVLVIKGEHKKEESGKDDSW-GRNYSSYDTRLSLPDNVDKDKVKAELKNGVLLISIPKTKVEKKVTDVEI 240
BLAST of CN188846 vs. ExPASy Swiss-Prot
Match: HS22C_SOYBN (Small heat shock protein, chloroplastic (Fragment) OS=Glycine max GN=HSP22 PE=2 SV=1) HSP 1 Score: 247.669 bits (631), Expect = 5.260e-65 Identity = 122/182 (67.03%), Postives = 147/182 (80.77%), Query Frame = 1 Query: 148 GGENKDTSVDV-HVNSGNQGTQAERRPRRTALDILPFGLMDPSFPTRTMRQMLDTMDRLLEDTMAFPGRSRAGGGGQVRTPWDIKEEENEIKMRFDMPGLXXXXXXXXXXXXXLVIKGEHRAE-EAGGDPSWSGASFSSYDTRLQLPDNCEKDKVKAELKNGVLYISIPKTNVERKVIDVQI 687 GG+NKD SV+V HV+ G+QGT E++PRRTA+DI PFG++DP P R+MRQ+LDTMDR+ EDTM FPGR+ GGG++R PWDIK+EE+EI+MRFDMPGL LVIKG H++E E GGD SWS ++SSYDTRL+LPDNCEKDKVKAELKNGVLYI+IPKT VERKVIDVQ+ Sbjct: 1 GGDNKDNSVEVQHVSKGDQGTAVEKKPRRTAMDISPFGILDPWSPMRSMRQILDTMDRVFEDTMTFPGRNI--GGGEIRAPWDIKDEEHEIRMRFDMPGLAKEDVKVSVEDDMLVIKGGHKSEQEHGGDDSWSSRTYSSYDTRLKLPDNCEKDKVKAELKNGVLYITIPKTKVERKVIDVQV 180
BLAST of CN188846 vs. ExPASy Swiss-Prot
Match: HS21C_PEA (Small heat shock protein, chloroplastic OS=Pisum sativum GN=HSP21 PE=2 SV=1) HSP 1 Score: 239.195 bits (609), Expect = 1.871e-62 Identity = 122/211 (57.82%), Postives = 154/211 (72.99%), Query Frame = 1 Query: 64 RNVAPCSVTLPATSRKGAYRLQAVRAQAGGE--NKDTSVDVH-VNSGNQGTQAERRPRRTALDILPFGLMDPSFPTRTMRQMLDTMDRLLEDTMAFPGRSRAGGGGQVRTPWDIKEEENEIKMRFDMPGLXXXXXXXXXXXXXLVIKGEHRAEEAGGDPSWSGASFSSYDTRLQLPDNCEKDKVKAELKNGVLYISIPKTNVERKVIDVQI 687 ++ PC + P + L+ VRAQAGG+ NKD SV+VH VN +QGT ER+PRR+++DI PFGL+DP P R+MRQMLDTMDR+ ED + PGR+ GGG++R PW+IK+EE+EI+MRFDMPG+ LVIK +HR EE GG+ WS S+S YDTRL+LPDNCEK+KVKAELK+GVLYI+IPKT +ER VIDVQI Sbjct: 24 KSTPPCMASFPLRRQLPRLGLRNVRAQAGGDGDNKDNSVEVHRVNKDDQGTAVERKPRRSSIDISPFGLLDPWSPMRSMRQMLDTMDRIFEDAITIPGRNI--GGGEIRVPWEIKDEEHEIRMRFDMPGVSKEDVKVSVEDDVLVIKSDHR-EENGGEDCWSRKSYSCYDTRLKLPDNCEKEKVKAELKDGVLYITIPKTKIERTVIDVQI 231
BLAST of CN188846 vs. ExPASy Swiss-Prot
Match: HS25P_ARATH (25.3 kDa heat shock protein, chloroplastic OS=Arabidopsis thaliana GN=HSP25.3 PE=2 SV=1) HSP 1 Score: 224.557 bits (571), Expect = 4.768e-58 Identity = 123/213 (57.75%), Postives = 146/213 (68.54%), Query Frame = 1 Query: 55 IARRNVAPCSVTLPATSRKGAYRLQAVRAQAGGENKDTSVDVHVNSGNQGTQAERRPR-RTALDILPFGLMDPSFPTRTMRQMLDTMDRLLEDTMAFPGRSRAGGG-GQVRTPWDIKEEENEIKMRFDMPGLXXXXXXXXXXXXXLVIKGEHRAEEAGGDPSWSGASFSSYDTRLQLPDNCEKDKVKAELKNGVLYISIPKTNVERKVIDVQI 687 ++ ++ P SV+ P RK R +RAQ EN V GNQG+ E+RP+ R +D+ PFGL+DP P RTMRQMLDTMDR+ EDTM GR+R G G ++R PWDIKEEE+EIKMRFDMPGL LVIKGE + E++ D SWSG S SSY TRLQLPDNCEKDK+KAELKNGVL+I+IPKT VERKVIDVQI Sbjct: 22 VSSKSATPFSVSFP---RKIPSR---IRAQDQRENSIDVVQQGQQKGNQGSSVEKRPQQRLTMDVSPFGLLDPLSPMRTMRQMLDTMDRMFEDTMPVSGRNRGGSGVSEIRAPWDIKEEEHEIKMRFDMPGLSKEDVKISVEDNVLVIKGEQKKEDS--DDSWSGRSVSSYGTRLQLPDNCEKDKIKAELKNGVLFITIPKTKVERKVIDVQI 226
BLAST of CN188846 vs. ExPASy Swiss-Prot
Match: HS21C_WHEAT (Small heat shock protein, chloroplastic OS=Triticum aestivum GN=HSP21 PE=2 SV=1) HSP 1 Score: 201.06 bits (510), Expect = 5.646e-51 Identity = 111/220 (50.45%), Postives = 129/220 (58.64%), Query Frame = 1 Query: 58 ARRNVAPCSVTLPATSRKGAYRLQAVRAQAGGENKDTSVDVHV----NSGNQ-GTQAERRPRRTALDILPFGLMDPSFPTRTMRQMLDTMDRLLEDTMAFPGRSRAGGGGQVRTPWDIKEEENEIKMRFDMPGLXXXXXXXXXXXXXLVIKGEHRAEEA-----GGDPSWSGASFSSYDTRLQLPDNCEKDKVKAELKNGVLYISIPKTNVERKVIDVQI 687 AR + PA G A A EN+D SVDV V N+GNQ G +RRPRR DI PFGL+DP P RTMRQMLDTMDRL +D + FP R + R PWDI E+E E+KMRFDMPGL LVI+GEH+ E GGD W S SSYD RL LPD C+K +V+AELKNGVL +S+PK ERKVIDVQ+ Sbjct: 18 ARLPIRAWRAARPAPLSTGGRTRPLSVASAAQENRDNSVDVQVSQAQNAGNQQGNAVQRRPRRAGFDISPFGLVDPMSPMRTMRQMLDTMDRLFDDAVGFPTRRSPAARARRRMPWDIMEDEKEVKMRFDMPGLSREEVRVMVEDDALVIRGEHKKEAGEGQGEGGDGWWKERSVSSYDMRLALPDECDKSQVRAELKNGVLLVSVPKRETERKVIDVQV 237
BLAST of CN188846 vs. ExPASy Swiss-Prot
Match: HS26P_ORYSJ (26.7 kDa heat shock protein, chloroplastic OS=Oryza sativa subsp. japonica GN=HSP26.7 PE=2 SV=1) HSP 1 Score: 194.126 bits (492), Expect = 6.902e-49 Identity = 114/215 (53.02%), Postives = 139/215 (64.65%), Query Frame = 1 Query: 82 SVTLPATSRKGAYRLQAVRAQAGGENKD-TSVDVHVNS--GNQ-GTQAERRPRRT-ALD-ILPFGLMDPSFPTRTMRQMLDTMDRLLEDT-MAFPGRSRAG-GGGQVRTPWDIKEEENEIKMRFDMPGLXXXXXXXXXXXXXLVIKGEHRAEEA-----GGDPSWSGASFSSYDTRLQLPDNCEKDKVKAELKNGVLYISIPKTNVERKVIDVQI 687 +V LP++ R Q A A EN+D T+VDVHVN GNQ G +RRPRR+ ALD I PFGL+DP P RTMRQMLDTMDR+ +D + FP R G+VR PWD+ E++ E++MRFDMPGL LVI+GEH+ EE GD W S SSYD RL LPD C+K KV+AELKNGVL +++PKT VERKVIDVQ+ Sbjct: 29 TVGLPSSGRAR----QLAVASAAQENRDNTAVDVHVNQDGGNQQGNAVQRRPRRSSALDGISPFGLVDPMSPMRTMRQMLDTMDRIFDDVALGFPATPRRSLATGEVRMPWDVMEDDKEVRMRFDMPGLSREEVKVMVEDDALVIRGEHKKEEGEGAEGSGDGWWKERSVSSYDMRLALPDECDKSKVRAELKNGVLLVTVPKTEVERKVIDVQV 239
BLAST of CN188846 vs. ExPASy Swiss-Prot
Match: HS23M_ARATH (23.6 kDa heat shock protein, mitochondrial OS=Arabidopsis thaliana GN=HSP23.6 PE=2 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 1.658e-18 Identity = 71/198 (35.86%), Postives = 103/198 (52.02%), Query Frame = 1 Query: 82 SVTLPATSRKGAYRLQAVRA-QAGGENKDTSVDVHVNSGNQGTQAERRPRRTALDILPFGLMDPSFPTRTMRQMLDTMDRLLEDTMAFPGRSRAGGGGQVRTPWDIKEEENEIKMRFDMPGLXXXXXXXXXXXXXLVIKGEHRAEEAGGDPSWSGASFSSYDTRLQLPDNCEK-DKVKAELKNGVLYISIPKTNVERK 669 SV PA S + + AVR+ GEN D VD++ S PRR D + DP PTR++ Q+L+ MD+ +E+ + +R G R WDIKE+++ + +R DMPGL LVI+GE + EE GG+ SG + +R+ LPD K D++KAE+KNGVL + IPK + + Sbjct: 21 SVLRPAVSSR-LFNTNAVRSYDDDGENGD-GVDLYRRSV---------PRRRG-DFFS-DVFDPFSPTRSVSQVLNLMDQFMENPLL--SATRGMGASGARRGWDIKEKDDALYLRIDMPGLSREDVKLALEQDTLVIRGEGKNEEDGGEEGESGN--RRFTSRIGLPDKIYKIDEIKAEMKNGVLKVVIPKMKEQER 201
BLAST of CN188846 vs. ExPASy Swiss-Prot
Match: HS235_ARATH (23.5 kDa heat shock protein, mitochondrial OS=Arabidopsis thaliana GN=HSP23.5 PE=2 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 2.394e-17 Identity = 53/138 (38.41%), Postives = 80/138 (57.97%), Query Frame = 1 Query: 259 LMDPSFPTRTMRQMLDTMDRLLEDTMAFPGRSRAGGGGQVRTPWDIKEEENEIKMRFDMPGLXXXXXXXXXXXXXLVIKGEHRAEEAGGDPSWSGASFSSYDTRLQLPDNCEK-DKVKAELKNGVLYISIPKTNVERK 669 ++DP PTR++ QML+ MD++ E + +R G VR W++KE+++ + +R DMPGL LVI+GE EE G D S G F+S R++LP+ K D++KAE+KNGVL + IPK + + Sbjct: 70 ILDPFTPTRSLSQMLNFMDQVSEIPLV--SATRGMGASGVRRGWNVKEKDDALHLRIDMPGLSREDVKLALEQNTLVIRGEGETEE-GEDVSGDGRRFTS---RIELPEKVYKTDEIKAEMKNGVLKVVIPKIKEDER 201
BLAST of CN188846 vs. ExPASy Swiss-Prot
Match: HS22M_PEA (Heat shock 22 kDa protein, mitochondrial OS=Pisum sativum GN=HSP22 PE=2 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 7.702e-16 Identity = 68/200 (34.00%), Postives = 101/200 (50.50%), Query Frame = 1 Query: 97 ATSRKGAYRLQAVRAQAGGENKDTSVDVHVNSGNQGTQAERRPRRTALDILPFGLMDPSFPTRTMRQMLDTMDRLLEDTMAFPGRSRAGGGGQVRTPWDIKEEENEIKMRFDMPGLXXXXXXXXXXXXXLVIKGEHRAEEAGGDPSWSGASFSSYDTRLQLPDNCEK-DKVKAELKNGVLYISIPKTNVERK--VIDVQI 687 A+S ++ A+R Q + D +VDV+ +S PR D+L + DP P R++ Q+L+ +D LL D SR G WD +E E+ + +R DMPGL L IKGE A+E+ + SG FSS R+ LP+ K D +KAE+KNGVL +++PK E + VI+V++ Sbjct: 25 ASSASRSFNTNAMR-QYDQHSDDRNVDVYRHSF---------PRTRRDDLLLSDVFDPFSPPRSLSQVLNMVD-LLTDNPVLSAASRRG--------WDARETEDALFLRLDMPGLGKEDVKISVEQNTLTIKGEEGAKES-EEKEKSGRRFSS---RIDLPEKLYKIDVIKAEMKNGVLKVTVPKMKEEERNNVINVKV 201 The following BLAST results are available for this feature:
BLAST of CN188846 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 13
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Sequences
The
following sequences are available for this feature:
EST sequence >CN188846 ID=CN188846; Name=CN188846; organism=Citrus sinensis; type=EST; length=760bpback to top |