CN182014

Overview
NameCN182014
Unique NameCN182014
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length440
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12407 contig Csv1_Contig12407:318..757. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN182014 vs. ExPASy Swiss-Prot
Match: SLSG0_BRAOA (S-locus-specific glycoprotein OS=Brassica oleracea var. alboglabra GN=SLSG PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.533e-15
Identity = 33/85 (38.82%), Postives = 54/85 (63.53%), Query Frame = 1
Query:   19 CKSGDQFIKLDDFKAPDLLEVSLNDSMNLNQCQAECLKNCSCRAYANSKLTGGGSGCLMWFGDLIDLRKPISNLTGQSVYIRVPA 273
            C  GD F+++   K P+  E  ++  + L +C+ +C+++C+C  YAN  +  GGSGC+MW G+L D+RK   N  GQ +Y++V A
Sbjct:  356 CGEGDGFLRMSQMKLPETSEAVVDKRIGLKECREKCVRDCNCTGYANMDIMNGGSGCVMWTGELDDMRK--YNAGGQDLYVKVAA 438          
BLAST of CN182014 vs. ExPASy Swiss-Prot
Match: SLSG1_BRAOA (S-locus-specific glycoprotein BS29-1 OS=Brassica oleracea var. alboglabra GN=SLSG PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 3.308e-15
Identity = 33/85 (38.82%), Postives = 54/85 (63.53%), Query Frame = 1
Query:   19 CKSGDQFIKLDDFKAPDLLEVSLNDSMNLNQCQAECLKNCSCRAYANSKLTGGGSGCLMWFGDLIDLRKPISNLTGQSVYIRVPA 273
            C  GD F+++   K P+  E  ++  + L +C+ +C+++C+C  YAN  +  GGSGC+MW G+L D+RK   N  GQ +Y++V A
Sbjct:  356 CGEGDGFLRMSQMKLPETSEAVVDKRIGLKECREKCVRDCNCTGYANMDIMNGGSGCVMWTGELDDMRK--YNAGGQDLYLKVAA 438          
BLAST of CN182014 vs. ExPASy Swiss-Prot
Match: SLSG2_BRAOA (S-locus-specific glycoprotein BS29-2 OS=Brassica oleracea var. alboglabra GN=SLSG PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 4.044e-13
Identity = 31/85 (36.47%), Postives = 52/85 (61.18%), Query Frame = 1
Query:   25 SGDQFIKLDDFKAPDLLEVSLNDSMNLNQCQAECLKNCSCRAYANSKLTGGGSGCLMWFGDLIDLRKPISNLTGQSVYIRVPAPD 279
            SGD F ++   K P+     ++ S+ L +C+  CL +C+C A+AN+ +  GG+GC++W G L D+R   +N  GQ +Y+R+   D
Sbjct:  351 SGDGFTRMKKMKLPETTMAIVDRSIGLKECEKRCLSDCNCTAFANADIRNGGTGCVIWTGQLEDIRTYFAN--GQDLYVRLAPAD 433          
BLAST of CN182014 vs. ExPASy Swiss-Prot
Match: SLSG6_BRAOL (S-locus-specific glycoprotein S6 OS=Brassica oleracea GN=SLSG PE=2 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 9.009e-13
Identity = 29/85 (34.12%), Postives = 54/85 (63.53%), Query Frame = 1
Query:   25 SGDQFIKLDDFKAPDLLEVSLNDSMNLNQCQAECLKNCSCRAYANSKLTGGGSGCLMWFGDLIDLRKPISNLTGQSVYIRVPAPD 279
            SGD F ++ + K P+     ++ S+ + +C+  CL +C+C A+AN+ +  GG+GC++W G L D+R  +++  GQ +Y+R+   D
Sbjct:  352 SGDGFTRMKNMKLPETTMAIVDRSIGVKECEKRCLSDCNCTAFANADIRNGGTGCVIWTGRLDDMRNYVAH--GQDLYVRLAVAD 434          
BLAST of CN182014 vs. ExPASy Swiss-Prot
Match: SRK6_BRAOE (Putative serine/threonine-protein kinase receptor OS=Brassica oleracea var. acephala GN=SRK6 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.177e-12
Identity = 30/91 (32.97%), Postives = 56/91 (61.54%), Query Frame = 1
Query:   25 SGDQFIKLDDFKAPDLLEVSLNDSMNLNQCQAECLKNCSCRAYANSKLTGGGSGCLMWFGDLIDLRKPISN-LTGQSVYIRVPAPDQGNKK 294
            SGD F ++   K P+    +++ S+ + +C+  C+ +C+C A+AN+ +  GGSGC++W   L D+R   ++ + GQ +Y+R+ A D   K+
Sbjct:  351 SGDGFTRMKKMKLPETTMATVDRSIGVKECKKRCISDCNCTAFANADIRNGGSGCVIWTERLEDIRNYATDAIDGQDLYVRLAAADIAKKR 441          
BLAST of CN182014 vs. ExPASy Swiss-Prot
Match: SLSG3_BRAOL (S-locus-specific glycoprotein S13 OS=Brassica oleracea GN=SLSG PE=2 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 1.177e-12
Identity = 30/85 (35.29%), Postives = 54/85 (63.53%), Query Frame = 1
Query:   25 SGDQFIKLDDFKAPDLLEVSLNDSMNLNQCQAECLKNCSCRAYANSKLTGGGSGCLMWFGDLIDLRKPISNLTGQSVYIRVPAPD 279
            SGD F ++ + K P+     ++ S+ L +C+  CL +C+C A+AN+ +   G+GC++W G+L D+R   ++  GQ +Y+R+ A D
Sbjct:  351 SGDGFTRMKNMKLPETTMAIVHRSIGLKECEKRCLSDCNCTAFANADIRNRGTGCVIWTGELEDIRTYFAD--GQDLYVRLAAAD 433          
BLAST of CN182014 vs. ExPASy Swiss-Prot
Match: SLSG4_BRAOL (S-locus-specific glycoprotein S14 (Fragment) OS=Brassica oleracea GN=SLSG PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.898e-11
Identity = 29/86 (33.72%), Postives = 53/86 (61.63%), Query Frame = 1
Query:   25 SGDQFIKLDDFKAPDLLEVSLNDSMNLNQCQAECLKNCSCRAYANSKLTGGGSGCLMWFGDLIDLRKPISNLT-GQSVYIRVPAPD 279
            SGD F ++ + K P+     ++ S+ + +C+  CL +C+C A+AN+ +  GG+GC++  G+L D+R   +  T  Q +Y+R+ A D
Sbjct:  347 SGDGFTRMKNMKLPETTMAIVDRSIGVKECEKRCLNDCNCTAFANADIRNGGTGCVINTGELEDMRSYATGATDSQDLYVRLAAAD 432          
The following BLAST results are available for this feature:
BLAST of CN182014 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
SLSG0_BRAOA2.533e-1538.82S-locus-specific glycoprotein OS=Brassica oleracea... [more]
SLSG1_BRAOA3.308e-1538.82S-locus-specific glycoprotein BS29-1 OS=Brassica o... [more]
SLSG2_BRAOA4.044e-1336.47S-locus-specific glycoprotein BS29-2 OS=Brassica o... [more]
SLSG6_BRAOL9.009e-1334.12S-locus-specific glycoprotein S6 OS=Brassica olera... [more]
SRK6_BRAOE1.177e-1232.97Putative serine/threonine-protein kinase receptor ... [more]
SLSG3_BRAOL1.177e-1235.29S-locus-specific glycoprotein S13 OS=Brassica oler... [more]
SLSG4_BRAOL2.898e-1133.72S-locus-specific glycoprotein S14 (Fragment) OS=Br... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_0001N04_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001N04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182014 ID=CN182014; Name=CN182014; organism=Citrus sinensis; type=EST; length=440bp
GGTGAGAGATCTTCAGATTGCAAAAGTGGAGACCAGTTTATAAAGCTTGA
TGACTTTAAAGCGCCTGATTTGCTAGAGGTTTCCCTAAATGACAGTATGA
ATTTGAACCAATGTCAGGCTGAGTGCTTGAAGAACTGTTCCTGTAGAGCT
TATGCCAATTCCAAACTAACAGGAGGAGGCAGTGGGTGTTTAATGTGGTT
TGGGGATCTGATTGATCTCAGAAAGCCAATTAGCAACTTGACCGGACAGT
CTGTCTACATACGAGTGCCCGCTCCCGATCAAGGAAACAAGAAGCTACTC
TGGATAATTGTAATACTTGTTCTACCCTTGGTACTTCTTCCTTCTTTTTA
CATATTTCGGCGAAGGAGGAGAAAACACAAAGAGAAAGAGAATATGGAGA
CAAACCAGGATCTGTTAGCATTTGACATAAATATGAGCAT
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