CN182010

Overview
NameCN182010
Unique NameCN182010
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length614
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7759 contig Csv1_Contig7759:183..795. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN182010 vs. ExPASy Swiss-Prot
Match: EF1D2_ARATH (Elongation factor 1-delta 2 OS=Arabidopsis thaliana GN=At2g18110 PE=2 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 4.716e-48
Identity = 100/193 (51.81%), Postives = 113/193 (58.55%), Query Frame = 2
Query:    5 AFDNVNSATGLKKLDEYLLTRSYITGYQASKDDITVYSALSKAPSSEYVNVSRWYKHIDALLRIXXXXXXXXXXXXXXXAPV------ATXXXXXXXXXXXXXXXXXXXLFGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGASKLAPVGYGIKKLQIMLT 565
            AF N+NS +GLKKLDE+LLTRSYITGYQASKDDITV++ALSK P+SE+VNVSRW+ HIDALLRI               +P+                           LFG                              VL+D+KPWDDETDMKKLEEAVRS+QMEGL WGASKL PVGYGIKKL IM T
Sbjct:    3 AFPNLNSGSGLKKLDEHLLTRSYITGYQASKDDITVFTALSKPPTSEFVNVSRWFNHIDALLRISGVSAEGSGVIVEGSSPITEEAVATPPAADSKDTAAEEEDDDDVDLFGEETEEEKKAAEERAASVKASTKKKESGKSSVLMDIKPWDDETDMKKLEEAVRSIQMEGLFWGASKLVPVGYGIKKLHIMCT 195          

HSP 2 Score: 30.0314 bits (66), Expect = 4.716e-48
Identity = 13/16 (81.25%), Postives = 15/16 (93.75%), Query Frame = 3
Query:  567 IVDDLVSVDTLIEEHL 614
            IVDDLVS+DT+IEE L
Sbjct:  196 IVDDLVSIDTMIEEQL 211          
BLAST of CN182010 vs. ExPASy Swiss-Prot
Match: EF1D1_ARATH (Elongation factor 1-delta 1 OS=Arabidopsis thaliana GN=At1g30230 PE=2 SV=2)

HSP 1 Score: 179.874 bits (455), Expect = 1.044e-47
Identity = 99/193 (51.30%), Postives = 112/193 (58.03%), Query Frame = 2
Query:    5 AFDNVNSATGLKKLDEYLLTRSYITGYQASKDDITVYSALSKAPSSEYVNVSRWYKHIDALLRIXXXXXXXXXXXXXXXAPV------ATXXXXXXXXXXXXXXXXXXXLFGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGASKLAPVGYGIKKLQIMLT 565
            AF N+NS  GLKKLDE+LLTRSYITGYQASKDDITV++AL+K P+S+YVN SRWY HIDALLRI               AP+                           LFG                              VL+D+KPWDDETDMKKLEEAV+S+QMEGL WGASKL PVGYGIKKLQI+ T
Sbjct:    3 AFPNLNSDAGLKKLDEHLLTRSYITGYQASKDDITVFAALAKPPTSQYVNASRWYNHIDALLRISGVSAEGSGVIVEGSAPITEEAVATPPAADSKDAAADEEDDDDVDLFGEETEEEKKAAEERAASVKASTKKKESGKSSVLIDIKPWDDETDMKKLEEAVKSIQMEGLFWGASKLVPVGYGIKKLQILCT 195          

HSP 2 Score: 30.0314 bits (66), Expect = 1.044e-47
Identity = 13/16 (81.25%), Postives = 15/16 (93.75%), Query Frame = 3
Query:  567 IVDDLVSVDTLIEEHL 614
            IVDDLVS+DT+IEE L
Sbjct:  196 IVDDLVSIDTMIEEQL 211          
BLAST of CN182010 vs. ExPASy Swiss-Prot
Match: EF1D1_ORYSJ (Elongation factor 1-delta 1 OS=Oryza sativa subsp. japonica GN=Os07g0614500 PE=2 SV=3)

HSP 1 Score: 172.94 bits (437), Expect = 4.621e-45
Identity = 100/191 (52.36%), Postives = 111/191 (58.12%), Query Frame = 2
Query:    2 VAFDNVNSATGLKKLDEYLLTRSYITGYQASKDDITVYSALSKAPSSEYVNVSRWYKHIDALLRIXXXXXXXXXXXXXXXA-PVAT--XXXXXXXXXXXXXXXXXXXLFGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGASKLAPVGYGIKKLQIMLT 565
            V+F NV+S  GLKKLDEYLLTRSYI+GYQAS DD+ VYSA S APSS Y NV+RW+ HIDALLR+               A P A+                     LFG                              VLLDVKPWDDETDM KLEEAVR+V+MEGLLWGASKL PVGYGIKKLQIM+T
Sbjct:    3 VSFTNVSSEAGLKKLDEYLLTRSYISGYQASNDDLAVYSAFSTAPSSSYTNVARWFTHIDALLRLSGVTADGQGVKVESTAVPSASTPDVADAKAPAADDDDDDDVDLFGEETEEEKKAAEERAAAVKASGKKKESGKSSVLLDVKPWDDETDMTKLEEAVRNVKMEGLLWGASKLVPVGYGIKKLQIMMT 193          

HSP 2 Score: 28.1054 bits (61), Expect = 4.621e-45
Identity = 12/17 (70.59%), Postives = 16/17 (94.12%), Query Frame = 3
Query:  561 LQIVDDLVSVDTLIEEH 611
            + IVDDLVSVD+LIE++
Sbjct:  192 MTIVDDLVSVDSLIEDY 208          
BLAST of CN182010 vs. ExPASy Swiss-Prot
Match: EF1D2_ORYSJ (Elongation factor 1-delta 2 OS=Oryza sativa subsp. japonica GN=Os03g0406200 PE=2 SV=3)

HSP 1 Score: 171.4 bits (433), Expect = 1.333e-44
Identity = 94/188 (50.00%), Postives = 108/188 (57.45%), Query Frame = 2
Query:    2 VAFDNVNSATGLKKLDEYLLTRSYITGYQASKDDITVYSALSKAPSSEYVNVSRWYKHIDALLRIXXXXXXXXXXXXXXXAPVATXXXXXXXXXXXXXXXXXXXLFGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGASKLAPVGYGIKKLQIMLT 565
            +   NVNS  GL+KLDEYLLTRSYI+GYQASKDD+TV+++L  AP++ YVNV+RWY HI ALLR                A   +                   LFG                              VLLDVKPWDDETDM KLEEAVR+V+MEGLLWGASKL PVGYGIKKLQIM+T
Sbjct:    3 ITLSNVNSEAGLQKLDEYLLTRSYISGYQASKDDMTVFTSLPSAPAASYVNVTRWYDHISALLRSSGVTAEGEGVKVESTACSVSPTADQKAPAADEEDDDDVDLFGEETEEEKKAAEERAAAVKASGKKKESGKSSVLLDVKPWDDETDMAKLEEAVRNVKMEGLLWGASKLVPVGYGIKKLQIMMT 190          

HSP 2 Score: 28.1054 bits (61), Expect = 1.333e-44
Identity = 12/17 (70.59%), Postives = 16/17 (94.12%), Query Frame = 3
Query:  561 LQIVDDLVSVDTLIEEH 611
            + IVDDLVSVD+LIE++
Sbjct:  189 MTIVDDLVSVDSLIEDY 205          
BLAST of CN182010 vs. ExPASy Swiss-Prot
Match: EF1D_PIMBR (Elongation factor 1-delta OS=Pimpinella brachycarpa PE=2 SV=3)

HSP 1 Score: 169.859 bits (429), Expect = 1.738e-44
Identity = 93/188 (49.47%), Postives = 110/188 (58.51%), Query Frame = 2
Query:    2 VAFDNVNSATGLKKLDEYLLTRSYITGYQASKDDITVYSALSKAPSSEYVNVSRWYKHIDALLRIXXXXXXXXXXXXXXXAPVATXXXXXXXXXXXXXXXXXXXLFGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGASKLAPVGYGIKKLQIMLT 565
            V F +++S  GL+KLDEYLL+RSYI+GYQASKDD+ V++AL+K PSS+YVNVSRWY H++ALLRI               +                       LFG                              VLLDVKPWDDETDM KLEEAVRS++M+GLLWGASKL  VGYGIKKLQIMLT
Sbjct:    3 VTFYDLSSEAGLEKLDEYLLSRSYISGYQASKDDLAVHAALAKPPSSKYVNVSRWYNHVEALLRISGVSAEGCGVTVEGSSVATPPVADTKASAAEDDDDDDVDLFGEETEEEKKASEERAAAVKASGKKKESGKSSVLLDVKPWDDETDMTKLEEAVRSIKMDGLLWGASKLVAVGYGIKKLQIMLT 190          

HSP 2 Score: 29.261 bits (64), Expect = 1.738e-44
Identity = 13/18 (72.22%), Postives = 16/18 (88.89%), Query Frame = 3
Query:  561 LQIVDDLVSVDTLIEEHL 614
            L IVDDLVSVD L+E++L
Sbjct:  189 LTIVDDLVSVDDLVEDYL 206          
BLAST of CN182010 vs. ExPASy Swiss-Prot
Match: EF1D_BETVU (Elongation factor 1-delta OS=Beta vulgaris PE=2 SV=3)

HSP 1 Score: 159.844 bits (403), Expect = 1.695e-41
Identity = 99/193 (51.30%), Postives = 108/193 (55.96%), Query Frame = 2
Query:    2 VAFDNVNSATGLKKLDEYLLTRSYITGYQASKDDITVYSALSKAPSSEYVNVSRWYKHIDALLRIXXXXXXXXXXXXXXXAP---VAT-XXXXXXXXXXXXXXXXXXXLFG-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGASKLAPVGYGIKKLQIMLT 565
            V F +++S  GL  LD YLL+RSYITGYQASKDD+TV+SA+ KA  + YVNVSRWYKHIDALLRI               AP   VAT                    LFG                               VLLDVKPWDDETDMKKLEEAVRSVQ EGL  GASKL PVGYGIKKL IM+T
Sbjct:    3 VTFSDLSSPAGLDSLDAYLLSRSYITGYQASKDDLTVFSAVPKASLASYVNVSRWYKHIDALLRISGVSGEGSGVTVEGNAPASDVATPPAADSKASAADDDDDDDVDLFGEETEEEKKAAEERAAAAAAKPAKKKESGKSSVLLDVKPWDDETDMKKLEEAVRSVQQEGLTLGASKLVPVGYGIKKLTIMMT 195          

HSP 2 Score: 29.261 bits (64), Expect = 1.695e-41
Identity = 13/18 (72.22%), Postives = 16/18 (88.89%), Query Frame = 3
Query:  561 LQIVDDLVSVDTLIEEHL 614
            + IVDDLVSVD LIE++L
Sbjct:  194 MTIVDDLVSVDNLIEDYL 211          
BLAST of CN182010 vs. ExPASy Swiss-Prot
Match: EF1B1_ARATH (Elongation factor 1-beta 1 OS=Arabidopsis thaliana GN=At5g12110 PE=2 SV=2)

HSP 1 Score: 121.324 bits (303), Expect = 1.053e-30
Identity = 74/190 (38.95%), Postives = 93/190 (48.95%), Query Frame = 2
Query:    2 VAFDNVNSATGLKKLDEYLLTRSYITGYQASKDDITVYSALSKAPSSEYVNVSRWYKHIDALLRIXXXXXXXXXXXXXXXAPV--ATXXXXXXXXXXXXXXXXXXXLFGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGASKLAPVGYGIKKLQIMLT 565
            V F ++++  GLK L+E+L  ++YI+G Q S DD+ VY+A+ + P   + N S+WY  + + L                 AP   A                    LF                               VLL+VKPWDDETDMKKLEEAVRSVQM GL WGASKL PVGYGIKKL IM+T
Sbjct:    3 VTFSDLHTERGLKTLEEHLAGKTYISGDQLSVDDVKVYAAVLENPGDGFPNASKWYDSVASHLAKSFPGKADGVRVGGGVAPPSEAHPHTEEPAADGDGDDDDDIDLFADETEDEKKAAEEREAAKKDTKKTKESGKSSVLLEVKPWDDETDMKKLEEAVRSVQMPGLTWGASKLVPVGYGIKKLTIMMT 192          

HSP 2 Score: 31.5722 bits (70), Expect = 1.053e-30
Identity = 14/18 (77.78%), Postives = 16/18 (88.89%), Query Frame = 3
Query:  561 LQIVDDLVSVDTLIEEHL 614
            + IVDDLVSVD LIE+HL
Sbjct:  191 MTIVDDLVSVDNLIEDHL 208          
BLAST of CN182010 vs. ExPASy Swiss-Prot
Match: EF1B2_ARATH (Elongation factor 1-beta 2 OS=Arabidopsis thaliana GN=At5g19510 PE=1 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 7.194e-29
Identity = 69/188 (36.70%), Postives = 93/188 (49.47%), Query Frame = 2
Query:    2 VAFDNVNSATGLKKLDEYLLTRSYITGYQASKDDITVYSALSKAPSSEYVNVSRWYKHIDALLRIXXXXXXXXXXXXXXXAPVATXXXXXXXXXXXXXXXXXXXLFGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGASKLAPVGYGIKKLQIMLT 565
            V F ++++  G+K ++E+L  ++YI+G Q S DD+ VY+A+   PS  + N S+WY+ + +  ++               +  A                    LFG                              VL+DVKPWDDETDMKKLEEAVR V+M GL WGASKL PVGYGIKKL IM T
Sbjct:    3 VTFSDLHTEEGVKSVEEHLAGKTYISGDQLSVDDVKVYAAVPVKPSDAFPNASKWYESVAS--QLAKSFPGKAVGVQFGGSAAAAPAVEAEAPAAAADDDDDMDLFGDETEEEKKAAEEREAAKKDTKKPKESGKSSVLMDVKPWDDETDMKKLEEAVRGVEMPGLFWGASKLVPVGYGIKKLTIMFT 188          

HSP 2 Score: 25.409 bits (54), Expect = 7.194e-29
Identity = 12/16 (75.00%), Postives = 13/16 (81.25%), Query Frame = 3
Query:  567 IVDDLVSVDTLIEEHL 614
            IVDDLVS D LIE+ L
Sbjct:  189 IVDDLVSPDNLIEDFL 204          
BLAST of CN182010 vs. ExPASy Swiss-Prot
Match: EF1B_ORYSJ (Elongation factor 1-beta OS=Oryza sativa subsp. japonica GN=Os07g0662500 PE=1 SV=3)

HSP 1 Score: 101.679 bits (252), Expect = 1.509e-25
Identity = 49/51 (96.08%), Postives = 49/51 (96.08%), Query Frame = 2
Query:  413 VLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGASKLAPVGYGIKKLQIMLT 565
            VLLDVKPWDDETDMKKLEEAVRSVQMEGL WGASKL PVGYGIKKLQIMLT
Sbjct:  138 VLLDVKPWDDETDMKKLEEAVRSVQMEGLTWGASKLVPVGYGIKKLQIMLT 188          

HSP 2 Score: 33.8834 bits (76), Expect = 1.509e-25
Identity = 16/18 (88.89%), Postives = 17/18 (94.44%), Query Frame = 3
Query:  561 LQIVDDLVSVDTLIEEHL 614
            L IVDDLVSVD+LIEEHL
Sbjct:  187 LTIVDDLVSVDSLIEEHL 204          
BLAST of CN182010 vs. ExPASy Swiss-Prot
Match: EF1B_WHEAT (Elongation factor 1-beta OS=Triticum aestivum PE=1 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 9.053e-21
Identity = 47/51 (92.16%), Postives = 49/51 (96.08%), Query Frame = 2
Query:  413 VLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGASKLAPVGYGIKKLQIMLT 565
            VL+D+KPWDDETDMKKLEEAVRSVQMEGL WGASKL PVGYGIKKLQIMLT
Sbjct:  132 VLMDIKPWDDETDMKKLEEAVRSVQMEGLTWGASKLMPVGYGIKKLQIMLT 182          
The following BLAST results are available for this feature:
BLAST of CN182010 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
EF1D2_ARATH4.716e-4851.81Elongation factor 1-delta 2 OS=Arabidopsis thalian... [more]
EF1D1_ARATH1.044e-4751.30Elongation factor 1-delta 1 OS=Arabidopsis thalian... [more]
EF1D1_ORYSJ4.621e-4552.36Elongation factor 1-delta 1 OS=Oryza sativa subsp.... [more]
EF1D2_ORYSJ1.333e-4450.00Elongation factor 1-delta 2 OS=Oryza sativa subsp.... [more]
EF1D_PIMBR1.738e-4449.47Elongation factor 1-delta OS=Pimpinella brachycarp... [more]
EF1D_BETVU1.695e-4151.30Elongation factor 1-delta OS=Beta vulgaris PE=2 SV... [more]
EF1B1_ARATH1.053e-3038.95Elongation factor 1-beta 1 OS=Arabidopsis thaliana... [more]
EF1B2_ARATH7.194e-2936.70Elongation factor 1-beta 2 OS=Arabidopsis thaliana... [more]
EF1B_ORYSJ1.509e-2596.08Elongation factor 1-beta OS=Oryza sativa subsp. ja... [more]
EF1B_WHEAT9.053e-2192.16Elongation factor 1-beta OS=Triticum aestivum PE=1... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001N01_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001N01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182010 ID=CN182010; Name=CN182010; organism=Citrus sinensis; type=EST; length=614bp
CGTCGCATTCGATAATGTCAACTCAGCCACTGGTCTGAAGAAACTCGATG
AATACCTTCTTACTCGCAGTTACATTACTGGGTACCAAGCTTCAAAGGAT
GATATCACTGTGTATTCAGCTCTTTCAAAAGCACCATCATCTGAATATGT
CAATGTGTCTCGGTGGTACAAGCATATTGATGCACTCTTAAGGATCTCTG
GCGTTACTGGTGAAGGCTCTGGTGTCACTGTAGAGGGATCTGCTCCTGTT
GCTACTCCCCCGGTAGCTGACTCAAAGGCAGCAGCTCCTGATGATGACGA
CGATGATGTGGATCTATTTGGTGAGGAGACAGAAGAGGAAAAGAAGGCTG
CCGAGGCACGCGCGGCTTCCGTCAAAGCATCAGCCAAAAAGAAAGAATCT
GGCAAGTCATCAGTTCTATTGGATGTGAAGCCTTGGGATGATGAGACTGA
CATGAAGAAGCTTGAGGAAGCAGTAAGAAGTGTTCAGATGGAAGGATTAC
TCTGGGGAGCCAGCAAACTTGCACCTGTTGGATATGGTATCAAGAAATTG
CAAATAATGCTTACAAATTGTGGATGACTTGGTGTCTGTTGACACCCTCA
TTGAGGAACACCTG
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