CN188842

Overview
NameCN188842
Unique NameCN188842
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length664
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig905 contig Csv1_Contig905:563..1225. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188842 vs. ExPASy Swiss-Prot
Match: IF41_WHEAT (Eukaryotic initiation factor iso-4F subunit p82-34 OS=Triticum aestivum PE=1 SV=2)

HSP 1 Score: 298.13 bits (762), Expect = 2.012e-86
Identity = 143/194 (73.71%), Postives = 165/194 (85.05%), Query Frame = 1
Query:   76 GKDITFKRILLNRCQEAFEGADNTRAEIRQMTAPEQEMERMDQERLVKLRTLGNIRLIGELLKQKMVPEKIVHHIGQELLENDGKTCPAEENVEAICPFFNTIGKQLDENPKSRRVNDVYFGRLKELTTNSQLVPRLKFMIHDVLDLRANNWVPRREEMKAKTIAEIHSEAEKNLGLRPAATAMMRNGRTGATG 657
            GK+ITFKR+LLN CQEAFEGAD+ R EI  +T P+QEME+ D+ER+ KLRTLGNIRLIGELLKQKMVPEKIVHHI +ELL +D K CP EE+VEAIC FFNTIGKQLDENPKSRR+ND YF +++EL  N QL PR KFM+ D++DLR+NNWVPRR E+KAKTI+EIH+EAEKNLGLRP ATA MRNGR    G
Sbjct:  286 GKEITFKRVLLNNCQEAFEGADSLRVEIASLTGPDQEMEKRDKERIFKLRTLGNIRLIGELLKQKMVPEKIVHHIVKELLGSDKKACPDEEHVEAICQFFNTIGKQLDENPKSRRINDTYFVQIRELVANPQLTPRSKFMVRDLIDLRSNNWVPRRAEIKAKTISEIHTEAEKNLGLRPGATANMRNGRNAPGG 479          

HSP 2 Score: 42.743 bits (99), Expect = 2.012e-86
Identity = 17/23 (73.91%), Postives = 20/23 (86.96%), Query Frame = 3
Query:    6 PMYALLCSDLNEKLPPFPSDEPG 74
            PMYA LCS+LN+ LP FPS+EPG
Sbjct:  263 PMYAQLCSELNDNLPTFPSEEPG 285          
BLAST of CN188842 vs. ExPASy Swiss-Prot
Match: IF4G1_ARATH (Eukaryotic translation initiation factor 4G OS=Arabidopsis thaliana GN=EIF4G PE=1 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 2.779e-29
Identity = 74/177 (41.81%), Postives = 111/177 (62.71%), Query Frame = 1
Query:   73 DGKDITFKRILLNRCQEAFEGADNTRAEIRQMTAPEQEMERMDQER-----LVKLRTLGNIRLIGELLKQKMVPEKIVHHIGQELLENDGKTCPAEENVEAICPFFNTIGKQLDENPKSRRVNDVYFGRLKELTTNSQLVPRLKFMIHDVLDLRANNWVPRREEMKAKTIAEIHSEA 588
            +G+ ITFKR+LLN+CQE FE  +    E  ++ A E ++E+ ++ER      V+ R LGNIRLIGEL K++M+ EKI+H   Q+LL  +    P EEN+EA+C   +TIG  +D N K++   D YF ++K L+   +L  R++FM+ + +DLR N W  R +    K I E+H +A
Sbjct: 1165 NGEKITFKRLLLNKCQEEFERGEKEEEEASRV-AEEGQVEQTEEEREEKRLQVRRRMLGNIRLIGELYKKRMLTEKIMHACIQKLLGYNQD--PHEENIEALCKLMSTIGVMIDHN-KAKFQMDGYFEKMKMLSCKQELSSRVRFMLINAIDLRKNKWQERMKVEGPKKIEEVHRDA 1337          
BLAST of CN188842 vs. ExPASy Swiss-Prot
Match: IF4G1_HUMAN (Eukaryotic translation initiation factor 4 gamma 1 OS=Homo sapiens GN=EIF4G1 PE=1 SV=3)

HSP 1 Score: 119.398 bits (298), Expect = 1.686e-26
Identity = 69/181 (38.12%), Postives = 102/181 (56.35%), Query Frame = 1
Query:   85 ITFKRILLNRCQEAFEGADNTRAEIRQMTAPEQEMERMDQER------------LVKLRTLGNIRLIGELLKQKMVPEKIVHHIGQELLENDGKTCPAEENVEAICPFFNTIGKQLDENPKSRRVNDVYFGRLKELTTNSQLVPRLKFMIHDVLDLRANNWVPRREEMKAKTIAEIHSEAE 591
            + F+++LLNRCQ+ FE  D    E+ +    E +     +ER            + + R+LGNI+ IGEL K KM+ E I+H    +LL+N       EE++E +C    TIGK LD      R+ D YF +++++    +   R++FM+ DVLDLR +NWVPRR +   KTI +IH EAE
Sbjct:  838 VNFRKLLLNRCQKEFE-KDKDDDEVFEKKQKEMDEAATAEERGRLKEELEEARDIARRRSLGNIKFIGELFKLKMLTEAIMHDCVVKLLKNHD-----EESLECLCRLLTTIGKDLDFEKAKPRM-DQYFNQMEKIIKEKKTSSRIRFMLQDVLDLRGSNWVPRRGDQGPKTIDQIHKEAE 1011          
BLAST of CN188842 vs. ExPASy Swiss-Prot
Match: IF4G1_MOUSE (Eukaryotic translation initiation factor 4 gamma 1 OS=Mus musculus GN=Eif4g1 PE=1 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 3.755e-26
Identity = 69/181 (38.12%), Postives = 102/181 (56.35%), Query Frame = 1
Query:   85 ITFKRILLNRCQEAFEGADNTRAEIRQMTAPEQEMERMDQER------------LVKLRTLGNIRLIGELLKQKMVPEKIVHHIGQELLENDGKTCPAEENVEAICPFFNTIGKQLDENPKSRRVNDVYFGRLKELTTNSQLVPRLKFMIHDVLDLRANNWVPRREEMKAKTIAEIHSEAE 591
            + F+++LLNRCQ+ FE  D    E+ +    E +     +ER            + + R+LGNI+ IGEL K KM+ E I+H    +LL+N       EE++E +C    TIGK LD      R+ D YF +++++    +   R++FM+ DVLDLR +NWVPRR +   KTI +IH EAE
Sbjct:  841 VNFRKLLLNRCQKEFE-KDKDDDEVFEKKQKEMDEAATAEERGRLKEELEEARDIARRRSLGNIKFIGELFKLKMLTEAIMHDCVVKLLKNHD-----EESLECLCRLLTTIGKDLDFAKAKPRM-DQYFNQMEKIIKEKKTSSRIRFMLQDVLDLRQSNWVPRRGDQGPKTIDQIHKEAE 1014          
BLAST of CN188842 vs. ExPASy Swiss-Prot
Match: IF4G1_RABIT (Eukaryotic translation initiation factor 4 gamma 1 OS=Oryctolagus cuniculus GN=EIF4G1 PE=1 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 6.405e-26
Identity = 71/180 (39.44%), Postives = 105/180 (58.33%), Query Frame = 1
Query:   85 ITFKRILLNRCQEAFEGA--DNTRAEIRQMTAPE----QEMERMDQER-----LVKLRTLGNIRLIGELLKQKMVPEKIVHHIGQELLENDGKTCPAEENVEAICPFFNTIGKQLDENPKSRRVNDVYFGRLKELTTNSQLVPRLKFMIHDVLDLRANNWVPRREEMKAKTIAEIHSEAE 591
            + F+++LLNRCQ+ FE    D+   E +Q    E    +E ER+ +E      + +  +LGNI+ IGEL K KM+ E I+H    +LL +D      EE++E +C    TIGK LD      R+ D YF +++++    +   R++FM+ DVLDLR +NWVPRR +   KTI +IH EAE
Sbjct:  642 VNFRKLLLNRCQKEFEKDKDDDEVFEKKQKEMDEAATAEERERLKEELEEARDIARRCSLGNIKFIGELFKLKMLTEAIMHDCVVKLLRHD------EESLEFLCRLLTTIGKDLDFEKAKPRM-DQYFNQMEKIIKEKKTSSRIRFMLQDVLDLRQSNWVPRRGDQGPKTIDQIHKEAE 814          
BLAST of CN188842 vs. ExPASy Swiss-Prot
Match: IF4G3_MOUSE (Eukaryotic translation initiation factor 4 gamma 3 OS=Mus musculus GN=Eif4g3 PE=1 SV=2)

HSP 1 Score: 116.316 bits (290), Expect = 1.427e-25
Identity = 67/183 (36.61%), Postives = 102/183 (55.74%), Query Frame = 1
Query:   76 GKDITFKRILLNRCQEAFEGA-------DNTRAEIRQMTAPEQEMERMDQERLVK----LRTLGNIRLIGELLKQKMVPEKIVHHIGQELLENDGKTCPAEENVEAICPFFNTIGKQLDENPKSRRVNDVYFGRLKELTTNSQLVPRLKFMIHDVLDLRANNWVPRREEMKAKTIAEIHSEAE 591
            G  + F+++LLNRCQ+ FE         +  + E+   +APE+     D+    K     R++GNI+ IGEL K KM+ E I+H    +LL+N       EE++E +C    TIGK LD      R+ D YF +++++    +   R++FM+ DV+DLR  NWV RR +   KTI +IH EA+
Sbjct:  823 GNTVNFRKLLLNRCQKEFEKDKADDDVFEKKQKELEAASAPEERTRLHDELEEAKDKARRRSIGNIKFIGELFKLKMLTEAIMHDCVVKLLKNHD-----EESLECLCRLLTTIGKDLDFEKAKPRM-DQYFNQMEKIVKERKTSSRIRFMLQDVIDLRLCNWVSRRADQGPKTIEQIHKEAK 999          
BLAST of CN188842 vs. ExPASy Swiss-Prot
Match: IF4G3_HUMAN (Eukaryotic translation initiation factor 4 gamma 3 OS=Homo sapiens GN=EIF4G3 PE=1 SV=2)

HSP 1 Score: 116.316 bits (290), Expect = 1.427e-25
Identity = 67/183 (36.61%), Postives = 102/183 (55.74%), Query Frame = 1
Query:   76 GKDITFKRILLNRCQEAFEGA-------DNTRAEIRQMTAPEQEMERMDQERLVK----LRTLGNIRLIGELLKQKMVPEKIVHHIGQELLENDGKTCPAEENVEAICPFFNTIGKQLDENPKSRRVNDVYFGRLKELTTNSQLVPRLKFMIHDVLDLRANNWVPRREEMKAKTIAEIHSEAE 591
            G  + F+++LLNRCQ+ FE         +  + E+   +APE+     D+    K     R++GNI+ IGEL K KM+ E I+H    +LL+N       EE++E +C    TIGK LD      R+ D YF +++++    +   R++FM+ DV+DLR  NWV RR +   KTI +IH EA+
Sbjct:  828 GNTVNFRKLLLNRCQKEFEKDKADDDVFEKKQKELEAASAPEERTRLHDELEEAKDKARRRSIGNIKFIGELFKLKMLTEAIMHDCVVKLLKNHD-----EESLECLCRLLTTIGKDLDFEKAKPRM-DQYFNQMEKIVKERKTSSRIRFMLQDVIDLRLCNWVSRRADQGPKTIEQIHKEAK 1004          
BLAST of CN188842 vs. ExPASy Swiss-Prot
Match: IF4G_SCHPO (Eukaryotic translation initiation factor 4 gamma OS=Schizosaccharomyces pombe GN=tif471 PE=1 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.061e-24
Identity = 76/190 (40.00%), Postives = 102/190 (53.68%), Query Frame = 1
Query:   85 ITFKRILLNRCQEAFEGADNTRAEIRQMTAPEQEMERMDQERLV----KLRTLGNIRLIGELLKQKMVPEKIVHHIGQELLENDGKTCPAEENVEAICPFFNTIGKQLDENPKSRRVNDVYFGRLKELTTNSQLVPRLKFMIHDVLDLRANNWVPRRE-EMKAKTIAEIHSEAEKNLGL----RPAATAM 627
            + F++ LL+RCQE FE     +A +    A E E+  M  E  V    K R LG +R IGEL K  M+ EKI+H   + LL N   T P EE +E++C    T+G  +D   K     DVY  R++ +T    L  R+KFM+ DV+D R N W  + E E   KTIAEIH EAE+   L    RP++  M
Sbjct: 1100 LLFRKYLLSRCQEDFERG--WKANLPSGKAGEAEI--MSDEYYVAAAIKRRGLGLVRFIGELFKLSMLSEKIMHECIKRLLGN--VTDPEEEEIESLCRLLMTVGVNIDATEKGHAAMDVYVLRMETITKIPNLPSRIKFMLMDVMDSRKNGWAVKNEVEKGPKTIAEIHEEAERKKALAESQRPSSGRM 1283          
BLAST of CN188842 vs. ExPASy Swiss-Prot
Match: IF4G2_MOUSE (Eukaryotic translation initiation factor 4 gamma 2 OS=Mus musculus GN=Eif4g2 PE=1 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 5.252e-20
Identity = 59/188 (31.38%), Postives = 105/188 (55.85%), Query Frame = 1
Query:   88 TFKRILLNRCQEAFEGADNTRAEIRQMTAPEQEMERMDQERLVKLRTLGNIRLIGELLKQKMVPEKIVHHIGQELLENDGKTCPAE--ENVEAICPFFNTIGKQLDENPKSRRVNDVYFGRLKELTTNSQLVPRLKFMIHDVLDLRANNWVPRRE--EMKAKTIAEIHSEAEKNLGL-RPAATAMMRN 636
            TF+R+L+++ Q+ FE       ++          E  +Q  + K++ LGNI+ IGEL K  ++ E I+H   + LLE   +    +  E++E +C    T+G +LD   +++ + D YF R+  L  + +L  R++F++ D ++LR ++WVPR+   +   KTI +I  +A K+LG+  PA  A  R+
Sbjct:  162 TFRRLLISKLQDEFENRTRN-VDVYDKRENPLLPEEEEQRAIAKIKMLGNIKFIGELGKLDLIHESILHKCIKTLLEKKKRVQLKDMGEDLECLCQIMRTVGPRLDHE-RAKSLMDQYFARMCSLMLSKELPARIRFLLQDTVELREHHWVPRKAFLDNGPKTINQIRQDAVKDLGVFIPAPMAQGRS 347          
BLAST of CN188842 vs. ExPASy Swiss-Prot
Match: IF4G2_RABIT (Eukaryotic translation initiation factor 4 gamma 2 OS=Oryctolagus cuniculus GN=EIF4G2 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 6.860e-20
Identity = 55/177 (31.07%), Postives = 100/177 (56.50%), Query Frame = 1
Query:   88 TFKRILLNRCQEAFEGADNTRAEIRQMTAPEQEMERMDQERLVKLRTLGNIRLIGELLKQKMVPEKIVHHIGQELLENDGKTCPAE--ENVEAICPFFNTIGKQLDENPKSRRVNDVYFGRLKELTTNSQLVPRLKFMIHDVLDLRANNWVPRRE--EMKAKTIAEIHSEAEKNLGL 606
            TF+R+L+++ Q+ FE       ++          E  +Q  + K++ LGNI+ IGEL K  ++ E I+H   + LLE   +    +  E++E +C    T+G +LD   +++ + D YF R+  L  + +L  R++F++ D ++LR ++WVPR+   +   KTI +I  +A K+LG+
Sbjct:  162 TFRRLLISKLQDEFENRTRN-VDVYDKRENPLLPEEEEQRAIAKIKMLGNIKFIGELGKLDLIHESILHKCIKTLLEKKKRVQLQDMGEDLECLCQIMRTVGPRLDHE-RAKSLMDQYFARMCSLMLSKELPARIRFLLQDTVELREHHWVPRKAFLDNGPKTINQIRQDAVKDLGV 336          
The following BLAST results are available for this feature:
BLAST of CN188842 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
IF41_WHEAT2.012e-8673.71Eukaryotic initiation factor iso-4F subunit p82-34... [more]
IF4G1_ARATH2.779e-2941.81Eukaryotic translation initiation factor 4G OS=Ara... [more]
IF4G1_HUMAN1.686e-2638.12Eukaryotic translation initiation factor 4 gamma 1... [more]
IF4G1_MOUSE3.755e-2638.12Eukaryotic translation initiation factor 4 gamma 1... [more]
IF4G1_RABIT6.405e-2639.44Eukaryotic translation initiation factor 4 gamma 1... [more]
IF4G3_MOUSE1.427e-2536.61Eukaryotic translation initiation factor 4 gamma 3... [more]
IF4G3_HUMAN1.427e-2536.61Eukaryotic translation initiation factor 4 gamma 3... [more]
IF4G_SCHPO2.061e-2440.00Eukaryotic translation initiation factor 4 gamma O... [more]
IF4G2_MOUSE5.252e-2031.38Eukaryotic translation initiation factor 4 gamma 2... [more]
IF4G2_RABIT6.860e-2031.07Eukaryotic translation initiation factor 4 gamma 2... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006O06_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006O06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188842 ID=CN188842; Name=CN188842; organism=Citrus sinensis; type=EST; length=664bp
AGGGTCCCATGTATGCACTTTTATGCTCTGACCTTAACGAGAAGCTTCCT
CCATTTCCTTCAGATGAGCCTGGACGGGAAAGATATCACCTTTAAGCGGA
TCCTTTTGAATCGTTGCCAGGAGGCATTTGAAGGTGCTGACAACACGAGG
GCAGAAATTAGGCAGATGACTGCTCCTGAACAAGAAATGGAACGTATGGA
TCAGGAACGACTGGTTAAGCTGCGGACCTTGGGGAACATACGCCTTATTG
GGGAACTTTTGAAGCAGAAGATGGTGCCTGAAAAGATTGTCCACCATATT
GGTCAGGAGCTTTTGGAGAATGATGGAAAAACATGCCCAGCTGAGGAGAA
TGTTGAGGCAATATGTCCATTTTTTAACACCATTGGAAAGCAGCTGGATG
AGAATCCTAAATCAAGGCGAGTCAATGATGTTTATTTTGGTCGATTGAAG
GAATTAACCACAAATTCGCAACTTGTGCCACGTTTGAAGTTCATGATCCA
TGATGTTCTTGATCTGCGGGCCAACAACTGGGTTCCTCGGCGGGAAGAGA
TGAAAGCCAAGACCATCGCCGAAATTCACTCGGAGGCTGAAAAGAATCTT
GGTCTGCGTCCTGCTGCAACTGCAATGATGAGAAATGGTCGTACAGGGGC
TACTGGAGGGATGG
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