CN188842
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CN188842 vs. ExPASy Swiss-Prot
Match: IF41_WHEAT (Eukaryotic initiation factor iso-4F subunit p82-34 OS=Triticum aestivum PE=1 SV=2) HSP 1 Score: 298.13 bits (762), Expect = 2.012e-86 Identity = 143/194 (73.71%), Postives = 165/194 (85.05%), Query Frame = 1 Query: 76 GKDITFKRILLNRCQEAFEGADNTRAEIRQMTAPEQEMERMDQERLVKLRTLGNIRLIGELLKQKMVPEKIVHHIGQELLENDGKTCPAEENVEAICPFFNTIGKQLDENPKSRRVNDVYFGRLKELTTNSQLVPRLKFMIHDVLDLRANNWVPRREEMKAKTIAEIHSEAEKNLGLRPAATAMMRNGRTGATG 657 GK+ITFKR+LLN CQEAFEGAD+ R EI +T P+QEME+ D+ER+ KLRTLGNIRLIGELLKQKMVPEKIVHHI +ELL +D K CP EE+VEAIC FFNTIGKQLDENPKSRR+ND YF +++EL N QL PR KFM+ D++DLR+NNWVPRR E+KAKTI+EIH+EAEKNLGLRP ATA MRNGR G Sbjct: 286 GKEITFKRVLLNNCQEAFEGADSLRVEIASLTGPDQEMEKRDKERIFKLRTLGNIRLIGELLKQKMVPEKIVHHIVKELLGSDKKACPDEEHVEAICQFFNTIGKQLDENPKSRRINDTYFVQIRELVANPQLTPRSKFMVRDLIDLRSNNWVPRRAEIKAKTISEIHTEAEKNLGLRPGATANMRNGRNAPGG 479 HSP 2 Score: 42.743 bits (99), Expect = 2.012e-86 Identity = 17/23 (73.91%), Postives = 20/23 (86.96%), Query Frame = 3 Query: 6 PMYALLCSDLNEKLPPFPSDEPG 74 PMYA LCS+LN+ LP FPS+EPG Sbjct: 263 PMYAQLCSELNDNLPTFPSEEPG 285
BLAST of CN188842 vs. ExPASy Swiss-Prot
Match: IF4G1_ARATH (Eukaryotic translation initiation factor 4G OS=Arabidopsis thaliana GN=EIF4G PE=1 SV=1) HSP 1 Score: 128.642 bits (322), Expect = 2.779e-29 Identity = 74/177 (41.81%), Postives = 111/177 (62.71%), Query Frame = 1 Query: 73 DGKDITFKRILLNRCQEAFEGADNTRAEIRQMTAPEQEMERMDQER-----LVKLRTLGNIRLIGELLKQKMVPEKIVHHIGQELLENDGKTCPAEENVEAICPFFNTIGKQLDENPKSRRVNDVYFGRLKELTTNSQLVPRLKFMIHDVLDLRANNWVPRREEMKAKTIAEIHSEA 588 +G+ ITFKR+LLN+CQE FE + E ++ A E ++E+ ++ER V+ R LGNIRLIGEL K++M+ EKI+H Q+LL + P EEN+EA+C +TIG +D N K++ D YF ++K L+ +L R++FM+ + +DLR N W R + K I E+H +A Sbjct: 1165 NGEKITFKRLLLNKCQEEFERGEKEEEEASRV-AEEGQVEQTEEEREEKRLQVRRRMLGNIRLIGELYKKRMLTEKIMHACIQKLLGYNQD--PHEENIEALCKLMSTIGVMIDHN-KAKFQMDGYFEKMKMLSCKQELSSRVRFMLINAIDLRKNKWQERMKVEGPKKIEEVHRDA 1337
BLAST of CN188842 vs. ExPASy Swiss-Prot
Match: IF4G1_HUMAN (Eukaryotic translation initiation factor 4 gamma 1 OS=Homo sapiens GN=EIF4G1 PE=1 SV=3) HSP 1 Score: 119.398 bits (298), Expect = 1.686e-26 Identity = 69/181 (38.12%), Postives = 102/181 (56.35%), Query Frame = 1 Query: 85 ITFKRILLNRCQEAFEGADNTRAEIRQMTAPEQEMERMDQER------------LVKLRTLGNIRLIGELLKQKMVPEKIVHHIGQELLENDGKTCPAEENVEAICPFFNTIGKQLDENPKSRRVNDVYFGRLKELTTNSQLVPRLKFMIHDVLDLRANNWVPRREEMKAKTIAEIHSEAE 591 + F+++LLNRCQ+ FE D E+ + E + +ER + + R+LGNI+ IGEL K KM+ E I+H +LL+N EE++E +C TIGK LD R+ D YF +++++ + R++FM+ DVLDLR +NWVPRR + KTI +IH EAE Sbjct: 838 VNFRKLLLNRCQKEFE-KDKDDDEVFEKKQKEMDEAATAEERGRLKEELEEARDIARRRSLGNIKFIGELFKLKMLTEAIMHDCVVKLLKNHD-----EESLECLCRLLTTIGKDLDFEKAKPRM-DQYFNQMEKIIKEKKTSSRIRFMLQDVLDLRGSNWVPRRGDQGPKTIDQIHKEAE 1011
BLAST of CN188842 vs. ExPASy Swiss-Prot
Match: IF4G1_MOUSE (Eukaryotic translation initiation factor 4 gamma 1 OS=Mus musculus GN=Eif4g1 PE=1 SV=1) HSP 1 Score: 118.242 bits (295), Expect = 3.755e-26 Identity = 69/181 (38.12%), Postives = 102/181 (56.35%), Query Frame = 1 Query: 85 ITFKRILLNRCQEAFEGADNTRAEIRQMTAPEQEMERMDQER------------LVKLRTLGNIRLIGELLKQKMVPEKIVHHIGQELLENDGKTCPAEENVEAICPFFNTIGKQLDENPKSRRVNDVYFGRLKELTTNSQLVPRLKFMIHDVLDLRANNWVPRREEMKAKTIAEIHSEAE 591 + F+++LLNRCQ+ FE D E+ + E + +ER + + R+LGNI+ IGEL K KM+ E I+H +LL+N EE++E +C TIGK LD R+ D YF +++++ + R++FM+ DVLDLR +NWVPRR + KTI +IH EAE Sbjct: 841 VNFRKLLLNRCQKEFE-KDKDDDEVFEKKQKEMDEAATAEERGRLKEELEEARDIARRRSLGNIKFIGELFKLKMLTEAIMHDCVVKLLKNHD-----EESLECLCRLLTTIGKDLDFAKAKPRM-DQYFNQMEKIIKEKKTSSRIRFMLQDVLDLRQSNWVPRRGDQGPKTIDQIHKEAE 1014
BLAST of CN188842 vs. ExPASy Swiss-Prot
Match: IF4G1_RABIT (Eukaryotic translation initiation factor 4 gamma 1 OS=Oryctolagus cuniculus GN=EIF4G1 PE=1 SV=1) HSP 1 Score: 117.472 bits (293), Expect = 6.405e-26 Identity = 71/180 (39.44%), Postives = 105/180 (58.33%), Query Frame = 1 Query: 85 ITFKRILLNRCQEAFEGA--DNTRAEIRQMTAPE----QEMERMDQER-----LVKLRTLGNIRLIGELLKQKMVPEKIVHHIGQELLENDGKTCPAEENVEAICPFFNTIGKQLDENPKSRRVNDVYFGRLKELTTNSQLVPRLKFMIHDVLDLRANNWVPRREEMKAKTIAEIHSEAE 591 + F+++LLNRCQ+ FE D+ E +Q E +E ER+ +E + + +LGNI+ IGEL K KM+ E I+H +LL +D EE++E +C TIGK LD R+ D YF +++++ + R++FM+ DVLDLR +NWVPRR + KTI +IH EAE Sbjct: 642 VNFRKLLLNRCQKEFEKDKDDDEVFEKKQKEMDEAATAEERERLKEELEEARDIARRCSLGNIKFIGELFKLKMLTEAIMHDCVVKLLRHD------EESLEFLCRLLTTIGKDLDFEKAKPRM-DQYFNQMEKIIKEKKTSSRIRFMLQDVLDLRQSNWVPRRGDQGPKTIDQIHKEAE 814
BLAST of CN188842 vs. ExPASy Swiss-Prot
Match: IF4G3_MOUSE (Eukaryotic translation initiation factor 4 gamma 3 OS=Mus musculus GN=Eif4g3 PE=1 SV=2) HSP 1 Score: 116.316 bits (290), Expect = 1.427e-25 Identity = 67/183 (36.61%), Postives = 102/183 (55.74%), Query Frame = 1 Query: 76 GKDITFKRILLNRCQEAFEGA-------DNTRAEIRQMTAPEQEMERMDQERLVK----LRTLGNIRLIGELLKQKMVPEKIVHHIGQELLENDGKTCPAEENVEAICPFFNTIGKQLDENPKSRRVNDVYFGRLKELTTNSQLVPRLKFMIHDVLDLRANNWVPRREEMKAKTIAEIHSEAE 591 G + F+++LLNRCQ+ FE + + E+ +APE+ D+ K R++GNI+ IGEL K KM+ E I+H +LL+N EE++E +C TIGK LD R+ D YF +++++ + R++FM+ DV+DLR NWV RR + KTI +IH EA+ Sbjct: 823 GNTVNFRKLLLNRCQKEFEKDKADDDVFEKKQKELEAASAPEERTRLHDELEEAKDKARRRSIGNIKFIGELFKLKMLTEAIMHDCVVKLLKNHD-----EESLECLCRLLTTIGKDLDFEKAKPRM-DQYFNQMEKIVKERKTSSRIRFMLQDVIDLRLCNWVSRRADQGPKTIEQIHKEAK 999
BLAST of CN188842 vs. ExPASy Swiss-Prot
Match: IF4G3_HUMAN (Eukaryotic translation initiation factor 4 gamma 3 OS=Homo sapiens GN=EIF4G3 PE=1 SV=2) HSP 1 Score: 116.316 bits (290), Expect = 1.427e-25 Identity = 67/183 (36.61%), Postives = 102/183 (55.74%), Query Frame = 1 Query: 76 GKDITFKRILLNRCQEAFEGA-------DNTRAEIRQMTAPEQEMERMDQERLVK----LRTLGNIRLIGELLKQKMVPEKIVHHIGQELLENDGKTCPAEENVEAICPFFNTIGKQLDENPKSRRVNDVYFGRLKELTTNSQLVPRLKFMIHDVLDLRANNWVPRREEMKAKTIAEIHSEAE 591 G + F+++LLNRCQ+ FE + + E+ +APE+ D+ K R++GNI+ IGEL K KM+ E I+H +LL+N EE++E +C TIGK LD R+ D YF +++++ + R++FM+ DV+DLR NWV RR + KTI +IH EA+ Sbjct: 828 GNTVNFRKLLLNRCQKEFEKDKADDDVFEKKQKELEAASAPEERTRLHDELEEAKDKARRRSIGNIKFIGELFKLKMLTEAIMHDCVVKLLKNHD-----EESLECLCRLLTTIGKDLDFEKAKPRM-DQYFNQMEKIVKERKTSSRIRFMLQDVIDLRLCNWVSRRADQGPKTIEQIHKEAK 1004
BLAST of CN188842 vs. ExPASy Swiss-Prot
Match: IF4G_SCHPO (Eukaryotic translation initiation factor 4 gamma OS=Schizosaccharomyces pombe GN=tif471 PE=1 SV=1) HSP 1 Score: 112.464 bits (280), Expect = 2.061e-24 Identity = 76/190 (40.00%), Postives = 102/190 (53.68%), Query Frame = 1 Query: 85 ITFKRILLNRCQEAFEGADNTRAEIRQMTAPEQEMERMDQERLV----KLRTLGNIRLIGELLKQKMVPEKIVHHIGQELLENDGKTCPAEENVEAICPFFNTIGKQLDENPKSRRVNDVYFGRLKELTTNSQLVPRLKFMIHDVLDLRANNWVPRRE-EMKAKTIAEIHSEAEKNLGL----RPAATAM 627 + F++ LL+RCQE FE +A + A E E+ M E V K R LG +R IGEL K M+ EKI+H + LL N T P EE +E++C T+G +D K DVY R++ +T L R+KFM+ DV+D R N W + E E KTIAEIH EAE+ L RP++ M Sbjct: 1100 LLFRKYLLSRCQEDFERG--WKANLPSGKAGEAEI--MSDEYYVAAAIKRRGLGLVRFIGELFKLSMLSEKIMHECIKRLLGN--VTDPEEEEIESLCRLLMTVGVNIDATEKGHAAMDVYVLRMETITKIPNLPSRIKFMLMDVMDSRKNGWAVKNEVEKGPKTIAEIHEEAERKKALAESQRPSSGRM 1283
BLAST of CN188842 vs. ExPASy Swiss-Prot
Match: IF4G2_MOUSE (Eukaryotic translation initiation factor 4 gamma 2 OS=Mus musculus GN=Eif4g2 PE=1 SV=2) HSP 1 Score: 97.8265 bits (242), Expect = 5.252e-20 Identity = 59/188 (31.38%), Postives = 105/188 (55.85%), Query Frame = 1 Query: 88 TFKRILLNRCQEAFEGADNTRAEIRQMTAPEQEMERMDQERLVKLRTLGNIRLIGELLKQKMVPEKIVHHIGQELLENDGKTCPAE--ENVEAICPFFNTIGKQLDENPKSRRVNDVYFGRLKELTTNSQLVPRLKFMIHDVLDLRANNWVPRRE--EMKAKTIAEIHSEAEKNLGL-RPAATAMMRN 636 TF+R+L+++ Q+ FE ++ E +Q + K++ LGNI+ IGEL K ++ E I+H + LLE + + E++E +C T+G +LD +++ + D YF R+ L + +L R++F++ D ++LR ++WVPR+ + KTI +I +A K+LG+ PA A R+ Sbjct: 162 TFRRLLISKLQDEFENRTRN-VDVYDKRENPLLPEEEEQRAIAKIKMLGNIKFIGELGKLDLIHESILHKCIKTLLEKKKRVQLKDMGEDLECLCQIMRTVGPRLDHE-RAKSLMDQYFARMCSLMLSKELPARIRFLLQDTVELREHHWVPRKAFLDNGPKTINQIRQDAVKDLGVFIPAPMAQGRS 347
BLAST of CN188842 vs. ExPASy Swiss-Prot
Match: IF4G2_RABIT (Eukaryotic translation initiation factor 4 gamma 2 OS=Oryctolagus cuniculus GN=EIF4G2 PE=2 SV=1) HSP 1 Score: 97.4413 bits (241), Expect = 6.860e-20 Identity = 55/177 (31.07%), Postives = 100/177 (56.50%), Query Frame = 1 Query: 88 TFKRILLNRCQEAFEGADNTRAEIRQMTAPEQEMERMDQERLVKLRTLGNIRLIGELLKQKMVPEKIVHHIGQELLENDGKTCPAE--ENVEAICPFFNTIGKQLDENPKSRRVNDVYFGRLKELTTNSQLVPRLKFMIHDVLDLRANNWVPRRE--EMKAKTIAEIHSEAEKNLGL 606 TF+R+L+++ Q+ FE ++ E +Q + K++ LGNI+ IGEL K ++ E I+H + LLE + + E++E +C T+G +LD +++ + D YF R+ L + +L R++F++ D ++LR ++WVPR+ + KTI +I +A K+LG+ Sbjct: 162 TFRRLLISKLQDEFENRTRN-VDVYDKRENPLLPEEEEQRAIAKIKMLGNIKFIGELGKLDLIHESILHKCIKTLLEKKKRVQLQDMGEDLECLCQIMRTVGPRLDHE-RAKSLMDQYFARMCSLMLSKELPARIRFLLQDTVELREHHWVPRKAFLDNGPKTINQIRQDAVKDLGV 336 The following BLAST results are available for this feature:
BLAST of CN188842 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 16
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Sequences
The
following sequences are available for this feature:
EST sequence >CN188842 ID=CN188842; Name=CN188842; organism=Citrus sinensis; type=EST; length=664bpback to top |