CN182004

Overview
NameCN182004
Unique NameCN182004
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length667
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN182004_ssr586 microsatellite CN182004_ssr586:586..595. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CN182004 vs. ExPASy Swiss-Prot
Match: TF2B_SOYBN (Transcription initiation factor IIB OS=Glycine max GN=TFIIB1 PE=2 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 4.548e-56
Identity = 109/126 (86.51%), Postives = 111/126 (88.10%), Query Frame = 3
Query:    3 KEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNXXXXXXXXXXXXSEEFDIRRSPISIAAAVIYIITQLSDDKKPLKDISVATGVAEGTIRNSYKDLYPHVSKIIPNWYAKEEDLKNLCSP 380
            KEYIVKQLGLE G +VEMGTIHAGDFMRRFCSNL MNN            SEEFDIRRSPISIAAAVIYIITQLSDDKKPLKDIS+ATGVAEGTIRNSYKDLYPHVSKIIPNWYAKEEDLKNLCSP
Sbjct:  188 KEYIVKQLGLENGNAVEMGTIHAGDFMRRFCSNLCMNNQAVKAAQEAVQKSEEFDIRRSPISIAAAVIYIITQLSDDKKPLKDISLATGVAEGTIRNSYKDLYPHVSKIIPNWYAKEEDLKNLCSP 313          
BLAST of CN182004 vs. ExPASy Swiss-Prot
Match: TF2B2_ARATH (Transcription initiation factor IIB-2 OS=Arabidopsis thaliana GN=TFIIB2 PE=2 SV=1)

HSP 1 Score: 211.075 bits (536), Expect = 4.257e-54
Identity = 107/126 (84.92%), Postives = 110/126 (87.30%), Query Frame = 3
Query:    3 KEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNXXXXXXXXXXXXSEEFDIRRSPISIAAAVIYIITQLSDDKKPLKDISVATGVAEGTIRNSYKDLYPHVSKIIPNWYAKEEDLKNLCSP 380
            KEYIVKQLGLETGQ VEMGTIHAGDFMRRFCSNLGM N            SEEFDIRRSPISIAAAVIYIITQLSD+KKPL+DISVATGVAEGTIRNSYKDLYPH+SKIIP WYAKEEDLKNL SP
Sbjct:  187 KEYIVKQLGLETGQLVEMGTIHAGDFMRRFCSNLGMTNQTVKAAQESVQKSEEFDIRRSPISIAAAVIYIITQLSDEKKPLRDISVATGVAEGTIRNSYKDLYPHLSKIIPAWYAKEEDLKNLQSP 312          
BLAST of CN182004 vs. ExPASy Swiss-Prot
Match: TF2B1_ARATH (Transcription initiation factor IIB-1 OS=Arabidopsis thaliana GN=TFIIB1 PE=1 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 2.186e-50
Identity = 100/126 (79.37%), Postives = 106/126 (84.13%), Query Frame = 3
Query:    3 KEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNXXXXXXXXXXXXSEEFDIRRSPISIAAAVIYIITQLSDDKKPLKDISVATGVAEGTIRNSYKDLYPHVSKIIPNWYAKEEDLKNLCSP 380
            K+YIVK LGLE GQSV++GTIHAGDFMRRFCSNL M+N            SEEFDIRRSPISIAA VIYIITQLSDDKK LKDIS ATGVAEGTIRNSYKDLYPH+SKI P+WYAKEEDLKNL SP
Sbjct:  187 KDYIVKTLGLEPGQSVDLGTIHAGDFMRRFCSNLAMSNHAVKAAQEAVQKSEEFDIRRSPISIAAVVIYIITQLSDDKKTLKDISHATGVAEGTIRNSYKDLYPHLSKIAPSWYAKEEDLKNLSSP 312          
BLAST of CN182004 vs. ExPASy Swiss-Prot
Match: TF2B_ORYSJ (Transcription initiation factor IIB OS=Oryza sativa subsp. japonica GN=TFIIB PE=1 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 3.729e-50
Identity = 98/126 (77.78%), Postives = 108/126 (85.71%), Query Frame = 3
Query:    3 KEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNXXXXXXXXXXXXSEEFDIRRSPISIAAAVIYIITQLSDDKKPLKDISVATGVAEGTIRNSYKDLYPHVSKIIPNWYAKEEDLKNLCSP 380
            KE+IVKQL +E GQS+EMGTIHAGDF+RRFCS LGMNN            SEE DIRRSPISIAAAVIY+ITQLSDDKKPLKDIS+ATGVAEGTIRNSYKDLYP+ S++IPN YAKEEDLKNLC+P
Sbjct:  187 KEFIVKQLEVEMGQSMEMGTIHAGDFLRRFCSTLGMNNQAVKAAQEAVQRSEELDIRRSPISIAAAVIYMITQLSDDKKPLKDISLATGVAEGTIRNSYKDLYPYASRLIPNTYAKEEDLKNLCTP 312          
BLAST of CN182004 vs. ExPASy Swiss-Prot
Match: TF2B_DROVI (Transcription initiation factor IIB OS=Drosophila virilis GN=TfIIB PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 9.594e-14
Identity = 42/93 (45.16%), Postives = 55/93 (59.14%), Query Frame = 3
Query:   63 IHAGDFMRRFCSNLGMNNXXXXXXXXXXXXSEEFDI--RRSPISIAAAVIYIITQLSDDKKPLKDISVATGVAEGTIRNSYKDLYPHVSKIIP 335
            I   DFM RFC+NL + N            + E DI   RSPIS+AAA IY+ +Q S+ K+  K+I    GVA+ TIR SYK +YPH +K+ P
Sbjct:  186 ITTADFMCRFCANLDLPNMVQRAATHIAKKAVEMDIVPGRSPISVAAAAIYMASQASEHKRSQKEIGDIAGVADVTIRQSYKLMYPHAAKLFP 278          
BLAST of CN182004 vs. ExPASy Swiss-Prot
Match: TF2B_DROME (Transcription initiation factor IIB OS=Drosophila melanogaster GN=TfIIB PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 9.594e-14
Identity = 42/93 (45.16%), Postives = 55/93 (59.14%), Query Frame = 3
Query:   63 IHAGDFMRRFCSNLGMNNXXXXXXXXXXXXSEEFDI--RRSPISIAAAVIYIITQLSDDKKPLKDISVATGVAEGTIRNSYKDLYPHVSKIIP 335
            I   DFM RFC+NL + N            + E DI   RSPIS+AAA IY+ +Q S+ K+  K+I    GVA+ TIR SYK +YPH +K+ P
Sbjct:  208 ITTADFMCRFCANLDLPNMVQRAATHIAKKAVEMDIVPGRSPISVAAAAIYMASQASEHKRSQKEIGDIAGVADVTIRQSYKLMYPHAAKLFP 300          
BLAST of CN182004 vs. ExPASy Swiss-Prot
Match: TF2B_XENLA (Transcription initiation factor IIB OS=Xenopus laevis GN=gtf2b PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.122e-13
Identity = 40/93 (43.01%), Postives = 53/93 (56.99%), Query Frame = 3
Query:   63 IHAGDFMRRFCSNLGMNNXXXXXXXXXXXXSEEFDI--RRSPISIAAAVIYIITQLSDDKKPLKDISVATGVAEGTIRNSYKDLYPHVSKIIP 335
            I  GDFM RFCSNLG+              + E D+   RSPIS+AAA IY+ +Q S +K+  K+I    GVA+ TIR SY+ +YP    + P
Sbjct:  209 ITTGDFMSRFCSNLGLTKQVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQASAEKRTQKEIGDIAGVADVTIRQSYRLIYPRAPDLFP 301          
BLAST of CN182004 vs. ExPASy Swiss-Prot
Match: TF2B_DICDI (Transcription initiation factor IIB OS=Dictyostelium discoideum GN=gtf2b PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.264e-12
Identity = 43/105 (40.95%), Postives = 62/105 (59.05%), Query Frame = 3
Query:   33 ETGQSV-EMGTIHAGDFMRRFCSNLGMNNXXXXXXXXXXXXSEEFDI--RRSPISIAAAVIYIITQLSDDKKPLKDISVATGVAEGTIRNSYKDLYPHVSKIIPN 338
            ET  SV  + TI + DF  RFCS L + N            + +  I   +SPIS+ AA IY+++QLS +K+  K I+  +GV+E TIRN+YKDLY    ++IP+
Sbjct:  207 ETFASVLNLQTISSEDFTSRFCSTLKLPNDVKKGAEHVSKMAMDMGIVAGKSPISVTAASIYMVSQLSPEKRTQKQIADVSGVSEVTIRNAYKDLYAKRDQLIPS 311          
BLAST of CN182004 vs. ExPASy Swiss-Prot
Match: TF2B_RAT (Transcription initiation factor IIB OS=Rattus norvegicus GN=Gtf2b PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.173e-11
Identity = 39/94 (41.49%), Postives = 53/94 (56.38%), Query Frame = 3
Query:   63 IHAGDFMRRFCSNLGMNNXXXXXXXXXXXXSEEFDI--RRSPISIAAAVIYIITQLSDDKKPLKDISVATGVAEGTIRNSYKDLYPHVSKIIPN 338
            I  GDFM RFCSNL +              + E D+   RSPIS+AAA IY+ +Q S +K+  K+I    GVA+ TIR SY+ +YP    + P+
Sbjct:  209 ITTGDFMSRFCSNLCLPKQVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQASAEKRTQKEIGDIAGVADVTIRQSYRLIYPRAPDLFPS 302          
BLAST of CN182004 vs. ExPASy Swiss-Prot
Match: TF2B_MOUSE (Transcription initiation factor IIB OS=Mus musculus GN=Gtf2b PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.173e-11
Identity = 39/94 (41.49%), Postives = 53/94 (56.38%), Query Frame = 3
Query:   63 IHAGDFMRRFCSNLGMNNXXXXXXXXXXXXSEEFDI--RRSPISIAAAVIYIITQLSDDKKPLKDISVATGVAEGTIRNSYKDLYPHVSKIIPN 338
            I  GDFM RFCSNL +              + E D+   RSPIS+AAA IY+ +Q S +K+  K+I    GVA+ TIR SY+ +YP    + P+
Sbjct:  209 ITTGDFMSRFCSNLCLPKQVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQASAEKRTQKEIGDIAGVADVTIRQSYRLIYPRAPDLFPS 302          
The following BLAST results are available for this feature:
BLAST of CN182004 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
TF2B_SOYBN4.548e-5686.51Transcription initiation factor IIB OS=Glycine max... [more]
TF2B2_ARATH4.257e-5484.92Transcription initiation factor IIB-2 OS=Arabidops... [more]
TF2B1_ARATH2.186e-5079.37Transcription initiation factor IIB-1 OS=Arabidops... [more]
TF2B_ORYSJ3.729e-5077.78Transcription initiation factor IIB OS=Oryza sativ... [more]
TF2B_DROVI9.594e-1445.16Transcription initiation factor IIB OS=Drosophila ... [more]
TF2B_DROME9.594e-1445.16Transcription initiation factor IIB OS=Drosophila ... [more]
TF2B_XENLA8.122e-1343.01Transcription initiation factor IIB OS=Xenopus lae... [more]
TF2B_DICDI5.264e-1240.95Transcription initiation factor IIB OS=Dictyosteli... [more]
TF2B_RAT1.173e-1141.49Transcription initiation factor IIB OS=Rattus norv... [more]
TF2B_MOUSE1.173e-1141.49Transcription initiation factor IIB OS=Mus musculu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001M20_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001M20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182004 ID=CN182004; Name=CN182004; organism=Citrus sinensis; type=EST; length=667bp
CAAAAGAATACATTGTGAAACAGCTGGGTTTGGAGACTGGTCAGTCAGTG
GAGATGGGAACTATACATGCTGGGGACTTTATGAGGCGCTTCTGTTCCAA
TTTGGGTATGAATAATCAAGCTGTTAAAGCTGCCCAAGAAGCTGTTCAGA
AGTCCGAGGAGTTTGATATAAGGAGGAGCCCAATATCAATTGCAGCTGCA
GTTATTTATATTATAACTCAGCTTTCAGATGACAAGAAGCCGCTCAAAGA
TATTTCTGTTGCTACTGGAGTTGCTGAGGGGACAATCAGAAATTCGTACA
AGGATCTTTATCCTCATGTCTCAAAGATAATACCAAACTGGTATGCCAAG
GAAGAGGATCTTAAAAACCTTTGCAGCCCGTAAAATGTAGAGCGCATGAA
TAACAACACCGTGAAACAAGCATCTTGAGTGGTTTGAACTGCCCTCACGT
TGATGTATTCAGAATCTGTCAGCATCCTATTTACGAGGATTTTCGTACTT
ATTTTCTTGACTGTTTTGTCTTTGTGCAGTTGACTGCATTGCAACCTTTA
ATTTACAAATATTGACAAAAAGTCAAAAAAAGTGAAGAGAGAGAGACAGA
GAGAAGGGGGAGAGAGACAGAGAGGAGCTAATACAAGTTTATTTTTCAAT
TTATGCTTAATTTATTT
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