CN182003

Overview
NameCN182003
Unique NameCN182003
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length670
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN182003 vs. ExPASy Swiss-Prot
Match: PPT1_CAEEL (Palmitoyl-protein thioesterase 1 OS=Caenorhabditis elegans GN=ppt-1 PE=2 SV=2)

HSP 1 Score: 118.242 bits (295), Expect = 3.825e-26
Identity = 73/221 (33.03%), Postives = 109/221 (49.32%), Query Frame = 2
Query:   35 FFPVSRSIPFIVLHGIGDQCSNQ----GVKQFTENLSSFSGSKGYCIEVGDG-TWD---SWFKPLEEQTEIVCEKVKKMKELSEGYNIVGLSQGNLIGRGVVEFCEGGPPVKNFVSLGGPHAGTASVPLC-GSGIFCIIANNLIKAEVYSDYVQDHLAPSGYLKFPNDIPKYLEKCKFLPKLNNELPDKRNSTYKERFSCLQNLVLIMFKDDKVLIPKETA 670
            F   ++ +P ++ HG+GD C N      VK+  E      G   + +++G   T D    ++    E   + C K+K   EL  GYN +G SQG    R V + C   PP+KN VS+GG H G    P C G  I C     LI    Y  +VQ  +  + Y   PN + +Y ++  FL  +NNE  +  N TYK     L+NLVL+ F  D +++PK+++
Sbjct:   18 FRNATKQVPVVMWHGMGDCCCNPLSMGSVKKLFEE--QIPGVYVHSLQLGSSITKDIEHGFYANTNELVYMACIKIKNDPELKNGYNAIGFSQGAQFLRAVAQRCP-NPPMKNLVSVGGQHQGVFGAPYCIGDNIMCNGVRRLIDLGAYLPFVQKRVVQAQYWHDPNQVEEYKKRSIFLADINNE--NNNNPTYKRNLLSLKNLVLVKFNQDHMVVPKDSS 233          
BLAST of CN182003 vs. ExPASy Swiss-Prot
Match: PDF1_SCHPO (Palmitoyl-protein thioesterase-dolichyl pyrophosphate phosphatase fusion 1 OS=Schizosaccharomyces pombe GN=pdf1 PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.777e-23
Identity = 61/224 (27.23%), Postives = 115/224 (51.34%), Query Frame = 2
Query:    5 ISFITVLLLFFFPVSRSIPFIVLHGIGDQCSNQGVKQFTENLSSFSGSKGYCIEVGDGTWDS----WFKPLEEQTEIVCEKVKKMKELSEGYNIVGLSQGNLIGRGVVEFCEGGPPVKNFVSLGGPHAGTASVPLCG-SGIFC-IIANNLIKAEVYSDYVQDHLAPSGYLKFPNDIPKYLEKCKFLPKLNNELPDKRNSTYKERFSCLQNLVLIMFKDDKVLIP 658
            IS   V L      S  +P ++ HG+GD  ++  + + ++ +   +    Y I VGD  ++     +   LE+Q + VC+ +     LS G+  +GLSQG L  R + + C+    +++ ++LG PH+G  ++P C  + + C  + ++++   ++  ++Q+H+  + Y +      KYLE  KFL  LNNE+     +   E+   L NLV + F+ D ++ P
Sbjct:    9 ISLDKVRLAINDGASEQLPVVIWHGLGDTPTSFTLTEVSQRVQKLTKGAVYAIRVGDNEFEDIKAGYLGKLEDQLDEVCDLIGNEDSLSNGFYALGLSQGGLFLRALAQTCDAAK-IRSLITLGSPHSGINTIPGCSPTNLICKAVVHSILGLGIWHSWIQNHVVQAQYYRTEKQYDKYLENNKFLTHLNNEVLHDNYTRNIEKLKELDNLVAVSFERDDIVEP 231          
BLAST of CN182003 vs. ExPASy Swiss-Prot
Match: PPT3_DICDI (Palmitoyl-protein thioesterase 3 OS=Dictyostelium discoideum GN=ppt3 PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 7.465e-22
Identity = 71/221 (32.13%), Postives = 114/221 (51.58%), Query Frame = 2
Query:    8 SFITVLLLFFFPVSRSIPFIVLHGIGD-QCSNQGVKQFTENLSSFSGSKGYCIEVGDGTWDSWFKPLEEQTEIVCEKVKKMKELSEGYNIVGLSQGNLIGRGVVEFCEGGPPVKNFVSLGGPHAGTASVPLCGSGIFCIIANNLIKAEVYSDYVQDHLAPSGYLKFPNDIPKYLEKCKFLPKLNNELPDKRNSTYKERFSCLQNLVLIMFKDDKVLIPKET 667
            S I ++ L    VS + P +++HG+   + S + +K + E   S        +E+G+G +DS F  ++ Q E   + V+   +L+ G+N++G SQG LI R  V+     P V N++S  GP  G    P     +     + ++    Y   +Q  L+ + Y K P+ I KYLE+  FL  +NNE   K N+TYKE  + L  +VL    +DK +IPKE+
Sbjct:    6 SLILLIALAIALVSATRPVVLMHGVTTGKESMEPLKSWIEE--SIPDIYVLNVEIGNGAFDSIFTTMDSQIEEFAQVVQADPKLANGFNLIGFSQGTLIARAFVQ-RYNNPQVYNYISWNGPQGGQFGTPF----VNIPWVDKVLGTIPYEKTIQKKLSVAEYWKDPHRIDKYLERSIFLADINNEYQVK-NTTYKENLTKLNAMVLTYSTNDKTIIPKES 218          
BLAST of CN182003 vs. ExPASy Swiss-Prot
Match: PPT1_MACFA (Palmitoyl-protein thioesterase 1 OS=Macaca fascicularis GN=PPT1 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.655e-19
Identity = 62/214 (28.97%), Postives = 98/214 (45.79%), Query Frame = 2
Query:   56 IPFIVLHGIGDQCSNQ----GVKQFTENLSSFSGSKGYCIEVG----DGTWDSWFKPLEEQTEIVCEKVKKMKELSEGYNIVGLSQGNLIGRGVVEFCEGGPPVKNFVSLGGPHAGTASVPLC--GSGIFCIIANNLIKAEVYSDYVQDHLAPSGYLKFPNDIPKYLEKCKFLPKLNNELPDKRNSTYKERFSCLQNLVLIMFKDDKVLIPKET 667
            +P ++ HG+GD C N      +K+  E      G     +E+G    +   +S+F  +  Q   VC+ + K  +L +GYN +G SQG    R V + C   PP+ N +S+GG H G   +P C   S   C      + A  YS  VQ+ L  + Y   P     Y     FL  +N E     N +YK+    L+  V++ F +D ++ P ++
Sbjct:   33 LPLVIWHGMGDSCCNPLSMGAIKKMVEK--KIPGIYVLSLEIGKTLMEDVENSFFLNVNSQVTTVCQTLAKDPKLQQGYNAMGFSQGGQFLRAVAQRCP-SPPMINLISVGGQHQGVFGLPRCPGESSHICDFIRKTLNAGAYSKVVQERLVQAEYWHDPIKEDVYRNHSIFLADINQE--RGINESYKKNLMALKKFVMVKFLNDSIVDPVDS 241          
BLAST of CN182003 vs. ExPASy Swiss-Prot
Match: PPT1_HUMAN (Palmitoyl-protein thioesterase 1 OS=Homo sapiens GN=PPT1 PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.655e-19
Identity = 62/214 (28.97%), Postives = 98/214 (45.79%), Query Frame = 2
Query:   56 IPFIVLHGIGDQCSNQ----GVKQFTENLSSFSGSKGYCIEVG----DGTWDSWFKPLEEQTEIVCEKVKKMKELSEGYNIVGLSQGNLIGRGVVEFCEGGPPVKNFVSLGGPHAGTASVPLC--GSGIFCIIANNLIKAEVYSDYVQDHLAPSGYLKFPNDIPKYLEKCKFLPKLNNELPDKRNSTYKERFSCLQNLVLIMFKDDKVLIPKET 667
            +P ++ HG+GD C N      +K+  E      G     +E+G    +   +S+F  +  Q   VC+ + K  +L +GYN +G SQG    R V + C   PP+ N +S+GG H G   +P C   S   C      + A  YS  VQ+ L  + Y   P     Y     FL  +N E     N +YK+    L+  V++ F +D ++ P ++
Sbjct:   33 LPLVIWHGMGDSCCNPLSMGAIKKMVEK--KIPGIYVLSLEIGKTLMEDVENSFFLNVNSQVTTVCQALAKDPKLQQGYNAMGFSQGGQFLRAVAQRCP-SPPMINLISVGGQHQGVFGLPRCPGESSHICDFIRKTLNAGAYSKVVQERLVQAEYWHDPIKEDVYRNHSIFLADINQE--RGINESYKKNLMALKKFVMVKFLNDSIVDPVDS 241          
BLAST of CN182003 vs. ExPASy Swiss-Prot
Match: PPT1_BOVIN (Palmitoyl-protein thioesterase 1 OS=Bos taurus GN=PPT1 PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.248e-18
Identity = 60/214 (28.04%), Postives = 98/214 (45.79%), Query Frame = 2
Query:   56 IPFIVLHGIGDQCSNQ----GVKQFTENLSSFSGSKGYCIEVG----DGTWDSWFKPLEEQTEIVCEKVKKMKELSEGYNIVGLSQGNLIGRGVVEFCEGGPPVKNFVSLGGPHAGTASVPLC--GSGIFCIIANNLIKAEVYSDYVQDHLAPSGYLKFPNDIPKYLEKCKFLPKLNNELPDKRNSTYKERFSCLQNLVLIMFKDDKVLIPKET 667
            +P ++ HG+GD C N      +K+  E      G     +E+G    +   +S+F  +  Q   VC+ + K  +L +GYN +G SQG    R V + C   PP+ N +S+GG H G   +P C   S   C      + A  Y+  +Q+ L  + Y   P     Y     FL  +N E     N +YK+    L+  V++ F +D ++ P ++
Sbjct:   33 LPLVIWHGMGDSCCNPLSMGAIKKMVEK--KIPGIHVLSLEIGKTLREDVENSFFLNVNSQVTTVCQILAKDPKLQQGYNAMGFSQGGQFLRAVAQRCP-SPPMVNLISVGGQHQGVFGLPRCPGESSHICDFIRKTLNAGAYNKAIQERLVQAEYWHDPIREDIYRNHSIFLADINQE--RGVNESYKKNLMALKKFVMVKFLNDTIVDPVDS 241          
BLAST of CN182003 vs. ExPASy Swiss-Prot
Match: PPT1_DROME (Palmitoyl-protein thioesterase 1 OS=Drosophila melanogaster GN=Ppt1 PE=1 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 3.834e-18
Identity = 64/212 (30.19%), Postives = 99/212 (46.70%), Query Frame = 2
Query:   56 IPFIVLHGIGDQCSNQGVKQFTENLSSFSGSKGYC--IEVGDGTWDSW----FKPLEEQTEIVCEKVKKMKELSEGYNIVGLSQGNLIGRGVVEFCEGGPPVKNFVSLGGPHAGTASVPLCGSGIF--CIIANNLIKAEVYSDYVQDHLAPSGYLKFPNDIPKYLEKCKFLPKLNNELPDKRNSTYKERFSCLQNLVLIMFKDDKVLIPKET 667
            +P ++ HG+GD C          NL       GY   +++G      W    F    EQ + VC+++ + + L++GY+ +G SQG    R V E C   PP++N ++LGG H G   +P+C +     C     L+    Y+  VQ  L  + Y   P    KY     FL  +NNEL    N  Y E    L+  V++ F +D ++ PKE+
Sbjct:   41 LPVVLWHGMGDTCCVPFSLGAIMNLIVEQTKGGYVRSLQIGGNVLIDWQSGFFIHPNEQVDYVCKQLLQDEHLAKGYHAIGFSQGGQFLRAVAERCP-NPPMRNLITLGGQHQGIFGLPMCPTLTEKPCDYITRLLDNAAYAPEVQKALVQATYWHDPIMENKYRLGSTFLADINNEL--FINKFYIENLQKLKKFVMVQFLNDTIVQPKES 249          
BLAST of CN182003 vs. ExPASy Swiss-Prot
Match: PPT1_MOUSE (Palmitoyl-protein thioesterase 1 OS=Mus musculus GN=Ppt1 PE=2 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 6.539e-18
Identity = 61/213 (28.64%), Postives = 97/213 (45.54%), Query Frame = 2
Query:   59 PFIVLHGIGDQCSNQG----VKQFTENLSSFSGSKGYCIEVGDGTWD----SWFKPLEEQTEIVCEKVKKMKELSEGYNIVGLSQGNLIGRGVVEFCEGGPPVKNFVSLGGPHAGTASVPLC--GSGIFCIIANNLIKAEVYSDYVQDHLAPSGYLKFPNDIPKYLEKCKFLPKLNNELPDKRNSTYKERFSCLQNLVLIMFKDDKVLIPKET 667
            P ++ HG+GD C N      +K+  E      G     +E+G    +    S+F  +  Q  +VC+ ++K  +L +GYN +G SQG    R V + C   PP+   +S+GG H G   +P C   S   C      + A  YS  VQ+ L  + Y   P     Y     FL  +N E     N +YK+    L+  V++ F +D ++ P ++
Sbjct:   34 PLVIWHGMGDSCCNPMSMGVIKKMVEK--EIPGIYVLSLEIGKNMMEDVENSFFLNVNVQVNMVCQILEKDPKLQQGYNAIGFSQGGQFLRAVAQRCP-TPPMMTLISVGGQHQGVFGLPRCPGESSHICDFIRKSLNAGAYSKLVQERLVQAQYWHDPIKESVYRNYSIFLADINQE--RCVNESYKKNLMALKKFVMVKFFNDSIVDPVDS 241          
BLAST of CN182003 vs. ExPASy Swiss-Prot
Match: PPT1_RAT (Palmitoyl-protein thioesterase 1 OS=Rattus norvegicus GN=Ppt1 PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 8.541e-18
Identity = 61/213 (28.64%), Postives = 96/213 (45.07%), Query Frame = 2
Query:   59 PFIVLHGIGDQCSNQ----GVKQFTENLSSFSGSKGYCIEVG----DGTWDSWFKPLEEQTEIVCEKVKKMKELSEGYNIVGLSQGNLIGRGVVEFCEGGPPVKNFVSLGGPHAGTASVPLC--GSGIFCIIANNLIKAEVYSDYVQDHLAPSGYLKFPNDIPKYLEKCKFLPKLNNELPDKRNSTYKERFSCLQNLVLIMFKDDKVLIPKET 667
            P ++ HG+GD C N      +K+  E      G     +E+G    +   +S+F  +  Q  + C+ ++K  +L  GYN +G SQG    R V + C   PP+   +S+GG H G   +P C   S   C      + A  YS  VQ+ L  + Y   P     Y     FL  +N E     N +YKE    L+  V++ F +D ++ P ++
Sbjct:   34 PLVIWHGMGDSCCNPMSMGSIKKMVEK--EIPGIYVLSLEIGKNMVEDVENSFFLNVNLQVGMACQILEKDPKLQHGYNAIGFSQGGQFLRAVAQRCP-TPPMMTLISVGGQHQGVFGLPRCPGESSHICDFIRKSLNAGAYSKVVQERLVQAQYWHDPIKEEVYRNCSIFLADINQE--RHINESYKENLMALKKFVMVKFFNDSIVDPVDS 241          
The following BLAST results are available for this feature:
BLAST of CN182003 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
PPT1_CAEEL3.825e-2633.03Palmitoyl-protein thioesterase 1 OS=Caenorhabditis... [more]
PDF1_SCHPO1.777e-2327.23Palmitoyl-protein thioesterase-dolichyl pyrophosph... [more]
PPT3_DICDI7.465e-2232.13Palmitoyl-protein thioesterase 3 OS=Dictyostelium ... [more]
PPT1_MACFA2.655e-1928.97Palmitoyl-protein thioesterase 1 OS=Macaca fascicu... [more]
PPT1_HUMAN2.655e-1928.97Palmitoyl-protein thioesterase 1 OS=Homo sapiens G... [more]
PPT1_BOVIN2.248e-1828.04Palmitoyl-protein thioesterase 1 OS=Bos taurus GN=... [more]
PPT1_DROME3.834e-1830.19Palmitoyl-protein thioesterase 1 OS=Drosophila mel... [more]
PPT1_MOUSE6.539e-1828.64Palmitoyl-protein thioesterase 1 OS=Mus musculus G... [more]
PPT1_RAT8.541e-1828.64Palmitoyl-protein thioesterase 1 OS=Rattus norvegi... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_0001M19_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001M19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182003 ID=CN182003; Name=CN182003; organism=Citrus sinensis; type=EST; length=670bp
GAGGATTTCTTTCATTACCGTCTTGCTCTTGTTTTTCTTTCCAGTTTCTC
GTTCGATTCCCTTCATAGTACTCCATGGTATTGGAGACCAGTGTTCCAAT
CAAGGAGTGAAACAGTTCACCGAAAATCTTAGCAGTTTTTCAGGTTCTAA
AGGATATTGCATAGAAGTTGGGGATGGGACATGGGATTCCTGGTTTAAGC
CTCTGGAGGAACAGACAGAAATTGTTTGTGAAAAGGTGAAGAAAATGAAA
GAACTGAGTGAAGGTTACAACATAGTTGGTCTCTCCCAGGGTAACTTAAT
AGGTCGAGGTGTTGTAGAGTTCTGCGAAGGTGGACCTCCGGTTAAGAACT
TTGTTTCCTTGGGAGGGCCTCATGCTGGTACTGCTTCTGTGCCCCTTTGT
GGTTCTGGTATCTTTTGCATAATTGCAAACAACCTAATCAAGGCAGAGGT
CTACAGTGACTATGTCCAAGATCATTTGGCTCCCAGTGGATATCTTAAAT
TTCCAAATGACATCCCCAAGTATTTGGAAAAATGTAAGTTCCTTCCAAAG
CTTAACAACGAACTCCCTGATAAGAGGAACTCCACTTACAAGGAACGCTT
CAGCTGCTTGCAAAACTTAGTGCTTATAATGTTCAAGGATGACAAGGTTT
TGATACCCAAGGAAACAGCC
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