CN188830

Overview
NameCN188830
Unique NameCN188830
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length741
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN188830_ssr709 microsatellite CN188830_ssr709:709..720. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig3381 contig Csv1_Contig3381:187..927. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN188830 vs. ExPASy Swiss-Prot
Match: F10AL_ARATH (FAM10 family protein At4g22670 OS=Arabidopsis thaliana GN=At4g22670 PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.621e-23
Identity = 51/59 (86.44%), Postives = 55/59 (93.22%), Query Frame = -2 
Query:  318 VDFSKILNDPELMAAFSDPEVMAALQDAMKNPANLAQHQANPKVAPIIAKMMAKFGGPK 494
            +DFSKILNDPELM AFSDPEVMAALQD MKNPANLA+HQANPKVAP+IAKMM KF GP+
Sbjct:  383 MDFSKILNDPELMTAFSDPEVMAALQDVMKNPANLAKHQANPKVAPVIAKMMGKFAGPQ 441
[Close]
BLAST of CN188830 vs. ExPASy Swiss-Prot
Match: F10A1_PONAB (Hsc70-interacting protein OS=Pongo abelii GN=ST13 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.876e-12
Identity = 31/54 (57.41%), Postives = 45/54 (83.33%), Query Frame = -2 
Query:  324 SKILNDPELMAAFSDPEVMAALQDAMKNPANLAQHQANPKVAPIIAKMMAKFGG 485
            ++IL+DPE++AA  DPEVM A QD  +NPAN++++Q+NPKV  +I+K+ AKFGG
Sbjct:  314 NEILSDPEVLAAMQDPEVMVAFQDVAQNPANMSKYQSNPKVMNLISKLSAKFGG 367
[Close]
BLAST of CN188830 vs. ExPASy Swiss-Prot
Match: F10A1_HUMAN (Hsc70-interacting protein OS=Homo sapiens GN=ST13 PE=1 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 2.876e-12
Identity = 31/54 (57.41%), Postives = 45/54 (83.33%), Query Frame = -2 
Query:  324 SKILNDPELMAAFSDPEVMAALQDAMKNPANLAQHQANPKVAPIIAKMMAKFGG 485
            ++IL+DPE++AA  DPEVM A QD  +NPAN++++Q+NPKV  +I+K+ AKFGG
Sbjct:  314 NEILSDPEVLAAMQDPEVMVAFQDVAQNPANMSKYQSNPKVMNLISKLSAKFGG 367
[Close]
BLAST of CN188830 vs. ExPASy Swiss-Prot
Match: F10A5_HUMAN (Protein FAM10A5 OS=Homo sapiens GN=FAM10A5 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.906e-12
Identity = 31/54 (57.41%), Postives = 44/54 (81.48%), Query Frame = -2 
Query:  324 SKILNDPELMAAFSDPEVMAALQDAMKNPANLAQHQANPKVAPIIAKMMAKFGG 485
            ++IL+DPE +AA  DPEVM A QD  +NPAN++++Q+NPKV  +I+K+ AKFGG
Sbjct:  314 NEILSDPEALAAMQDPEVMVAFQDVAQNPANMSKYQSNPKVMNLISKLSAKFGG 367
[Close]
BLAST of CN188830 vs. ExPASy Swiss-Prot
Match: F10A1_MOUSE (Hsc70-interacting protein OS=Mus musculus GN=St13 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.407e-12
Identity = 30/54 (55.56%), Postives = 45/54 (83.33%), Query Frame = -2 
Query:  324 SKILNDPELMAAFSDPEVMAALQDAMKNPANLAQHQANPKVAPIIAKMMAKFGG 485
            ++IL+DPE++AA  DPEVM A QD  +NP+N++++Q+NPKV  +I+K+ AKFGG
Sbjct:  316 NEILSDPEVLAAMQDPEVMVAFQDVAQNPSNMSKYQSNPKVMNLISKLSAKFGG 369
[Close]
BLAST of CN188830 vs. ExPASy Swiss-Prot
Match: F10A1_CHICK (Hsc70-interacting protein OS=Gallus gallus GN=ST13 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.093e-11
Identity = 31/53 (58.49%), Postives = 43/53 (81.13%), Query Frame = -2 
Query:  327 SKILNDPELMAAFSDPEVMAALQDAMKNPANLAQHQANPKVAPIIAKMMAKFG 485
            ++IL+DPE++AA  DPEVMAA QD  +NPAN++++Q NPKV  +I K+ AKFG
Sbjct:  306 NEILSDPEVLAAMQDPEVMAAFQDVAQNPANMSKYQNNPKVMSLITKLSAKFG 358
[Close]
BLAST of CN188830 vs. ExPASy Swiss-Prot
Match: F10A1_RAT (Hsc70-interacting protein OS=Rattus norvegicus GN=St13 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.427e-11
Identity = 30/54 (55.56%), Postives = 44/54 (81.48%), Query Frame = -2 
Query:  324 SKILNDPELMAAFSDPEVMAALQDAMKNPANLAQHQANPKVAPIIAKMMAKFGG 485
            ++IL+DPE++AA  DPEVM A QD  +NP+N++++Q NPKV  +I+K+ AKFGG
Sbjct:  313 NEILSDPEVLAAMQDPEVMVAFQDVAQNPSNMSKYQNNPKVMNLISKLSAKFGG 366
The following BLAST results are available for this feature:
BLAST of CN188830 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
F10AL_ARATH3.621e-2386.44FAM10 family protein At4g22670 OS=Arabidopsis thal... [more]
F10A1_PONAB2.876e-1257.41Hsc70-interacting protein OS=Pongo abelii GN=ST13 ... [more]
F10A1_HUMAN2.876e-1257.41Hsc70-interacting protein OS=Homo sapiens GN=ST13 ... [more]
F10A5_HUMAN4.906e-1257.41Protein FAM10A5 OS=Homo sapiens GN=FAM10A5 PE=1 SV... [more]
F10A1_MOUSE6.407e-1255.56Hsc70-interacting protein OS=Mus musculus GN=St13 ... [more]
F10A1_CHICK1.093e-1158.49Hsc70-interacting protein OS=Gallus gallus GN=ST13... [more]
F10A1_RAT1.427e-1155.56Hsc70-interacting protein OS=Rattus norvegicus GN=... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0006N22_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006N22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188830 ID=CN188830; Name=CN188830; organism=Citrus sinensis; type=EST; length=741bp
TTTTTTTTTTTTTTTTTAGGCTATGGCATACCTTTAATAATTCTGCAAGT
AAAAACTAGTCCCAAGTTATGAAAGCACATTCCTTGTTCAGCAACTAAGA
CAAGAATTTGAGGACGAAATTTTAAACCACTACATAAACTCAATCCTTTC
ACCCAGAAAGAAAAATTCCCAGCAGATATGTAGATGCAGCTGCCAGAGAT
TCCTAATCCATACCATACCCAGAAATCGTAAGAGCCGCACAAGATTCATG
AGATGTGACACACAAAGGTTACCATTCACCAACAACAAAATAAGATGCCA
GCCTGGAAAGCAATCTACTTGGGTCCTCCAAACTTGGCCATCATCTTAGC
AATTATGGGAGCCACTTTGGGATTTGCTTGATGCTGAGCGAGATTAGCAG
GGTTCTTCATTGCATCTTGAAGAGCAGCCATGACTTCTGGATCGCTAAAT
GCTGCCATCAACTCAGGGTCATTTAATATCTTGCTAAAATCAACATTTCC
AGGCCCCCCTCCTGGCATGCCACCTGGGAAGCCTCCTGGCATGCCACCAG
GGAAGCCTCCAGGGAAGCCTCCTGGCATTCCACCTGCTCCACCAGGCATC
CCTCCAGTTCTTTCGCTTGAAGATGATTGCTCTTCCTTCTTAGCCTTCTC
ATATGCAGCCTGAGCTTCAGCACGACGACGAAGTCTCTCACGCTCAACCT
TTCTCTCTTCTCTCTCTCTCCGCAGTCTATCATACTTCCTA
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