CN188829

Overview
NameCN188829
Unique NameCN188829
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length707
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6335 contig Csv1_Contig6335:166..872. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188829 vs. ExPASy Swiss-Prot
Match: THIJ_ECOLI (Protein thiJ OS=Escherichia coli (strain K12) GN=thiJ PE=1 SV=2)

HSP 1 Score: 128.257 bits (321), Expect = 4.099e-29
Identity = 77/175 (44.00%), Postives = 104/175 (59.43%), Query Frame = -2
Query:  191 GSEEMEAVIIIDILRRAKANVVVASV--EDKLEILASREVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNKLSDQSEIENRVMVDG--NLITSRGPGTSMEFALAIVEKFFGRNKALELAKILL 703
            GSEE EAV  ID+L R    V  ASV  +  L I  SR VKL+AD  + E A   YD+IVLPGG+ GA+ F  S  LV  +K+   S R   AICA+PA VL PH +      T FP + +K+  +  ++ RV+ D    L+TS+GPGT+++F L I++   GR KA E+A  L+
Sbjct:   12 GSEETEAVTTIDLLVRGGIKVTTASVASDGNLAITCSRGVKLLADAPLVEVADGEYDVIVLPGGIKGAECFRDSTLLVETVKQFHRSGRIVAAICAAPATVLVPHDIFPIGNMTGFPTLKDKIPAEQWLDKRVVWDARVKLLTSQGPGTAIDFGLKIIDLLVGREKAHEVASQLV 186          
BLAST of CN188829 vs. ExPASy Swiss-Prot
Match: THIJ_SALTY (Protein thiJ OS=Salmonella typhimurium GN=thiJ PE=3 SV=2)

HSP 1 Score: 127.872 bits (320), Expect = 5.354e-29
Identity = 77/175 (44.00%), Postives = 106/175 (60.57%), Query Frame = -2
Query:  191 GSEEMEAVIIIDILRRAKANVVVASV--EDKLEILASREVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNKLSDQSEIENRVMVDG--NLITSRGPGTSMEFALAIVEKFFGRNKALELAKILL 703
            GSEE EAV  ID+L R   +V  ASV  +  L I+ SR VKL+AD  + E A   YD+IVLPGG+ GA+ F  S  LV  +K+   S R   AICA+ A VL PH +      T FPA+ +K+  +  ++ RV+ D    L+TS+GPGT+++F L I++   GR KA E+A  L+
Sbjct:   12 GSEETEAVTTIDLLVRGGIHVTTASVASDGNLTIVCSRGVKLLADAPLVEVADGDYDIIVLPGGIKGAECFRDSPLLVETVKQFHRSGRIVAAICAAAATVLVPHDIFPIGNMTGFPALKDKIPAEQWLDKRVVWDARVKLLTSQGPGTAIDFGLKIIDLLAGREKAHEVASQLV 186          
BLAST of CN188829 vs. ExPASy Swiss-Prot
Match: PARK7_DANRE (Protein DJ-1 OS=Danio rerio GN=park7 PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.116e-26
Identity = 73/175 (41.71%), Postives = 100/175 (57.14%), Query Frame = -2
Query:  191 GSEEMEAVIIIDILRRAKANVVVASVEDKLEILASREVKLVADMLIDEAAKLS-YDLIVLPGGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNKLSDQSEI---ENRVMVDGNLITSRGPGTSMEFALAIVEKFFGRNKALELAKILL 703
            G+EEME VI +D++RRA   V VA +  K  +  SREV +  D  +++A K   YD+++LPGGL GAQ  ++S  +  +LK Q+       AICA P  +L  HG+  G   T  P   +K+         E RV  DGN+ITSRGPGTS EFAL IVE+  G   A ++   L+
Sbjct:   13 GAEEMETVIPVDVMRRAGIAVTVAGLAGKEPVQCSREVMICPDSSLEDAHKQGPYDVVLLPGGLLGAQNLSESPAVKEVLKDQEGRKGLIAAICAGPTALLA-HGIAYGSTVTTHPGAKDKMMAGDHYKYSEARVQKDGNVITSRGPGTSFEFALTIVEELMGAEVAAQVKAPLI 186          
BLAST of CN188829 vs. ExPASy Swiss-Prot
Match: PARK7_MESAU (Protein DJ-1 OS=Mesocricetus auratus GN=PARK7 PE=1 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 7.236e-26
Identity = 73/167 (43.71%), Postives = 99/167 (59.28%), Query Frame = -2
Query:  215 GSEEMEAVIIIDILRRAKANVVVASVEDKLEILASREVKLVADMLIDEAAKLS-YDLIVLPGGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNKL---SDQSEIENRVMVDGNLITSRGPGTSMEFALAIVEKFFGRNKA 703
            G+EEME VI +DI+RRA   V VA +  K  +  SR+V +  D  +++A K   YD++VLPGG  GAQ  ++S  +  +LK+Q+       AICA P  +L  H +  G K T  P   +K+   S  S  E+RV  DG ++TSRGPGTS EFALAIVE   G+  A
Sbjct:   13 GAEEMETVIPVDIMRRAGIKVTVAGLAGKDPVQCSRDVMICPDTSLEDAKKQGPYDVVVLPGGNLGAQNLSESPVVKEILKEQESRKGLIAAICAGPTALLA-HEIGFGSKVTTHPGAKDKMMNGSHYSYSESRVEKDGLILTSRGPGTSFEFALAIVEALSGKEAA 178          
BLAST of CN188829 vs. ExPASy Swiss-Prot
Match: PARK7_CHICK (Protein DJ-1 OS=Gallus gallus GN=PARK7 PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 9.450e-26
Identity = 72/175 (41.14%), Postives = 102/175 (58.29%), Query Frame = -2
Query:  191 GSEEMEAVIIIDILRRAKANVVVASVEDKLEILASREVKLVADMLIDEAAKLS-YDLIVLPGGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNKLSDQSEI---ENRVMVDGNLITSRGPGTSMEFALAIVEKFFGRNKALELAKILL 703
            G+EEME VI  D++RRA   V VA +  K  +  SR+V +  D  +++A K   YD+IVLPGG  GAQ  ++S  + ++LK Q+       AICA P  +L  HG+  G K    P   +K+ + +     E+RV  DGN++TSRGPGTS EF LAIVE   G+  A ++   L+
Sbjct:   13 GAEEMETVIPTDVMRRAGIKVTVAGLTGKEPVQCSRDVLICPDASLEDARKEGPYDVIVLPGGNLGAQNLSESAAVKDILKDQESRKGLIAAICAGPTALLA-HGIGFGSKVITHPLAKDKMMNGAHYCYSESRVEKDGNILTSRGPGTSFEFGLAIVEALMGKEVAEQVKAPLI 186          
BLAST of CN188829 vs. ExPASy Swiss-Prot
Match: PARK7_HUMAN (Protein DJ-1 OS=Homo sapiens GN=PARK7 PE=1 SV=2)

HSP 1 Score: 116.316 bits (290), Expect = 1.612e-25
Identity = 71/170 (41.76%), Postives = 100/170 (58.82%), Query Frame = -2
Query:  206 GSEEMEAVIIIDILRRAKANVVVASVEDKLEILASREVKLVADMLIDEAAKLS-YDLIVLPGGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNKLSDQSEI---ENRVMVDGNLITSRGPGTSMEFALAIVEKFFGRNKALEL 703
            G+EEME VI +D++RRA   V VA +  K  +  SR+V +  D  +++A K   YD++VLPGG  GAQ  ++S  +  +LK+Q+       AICA P  +L  H +  G K T  P   +K+ +       ENRV  DG ++TSRGPGTS EFALAIVE   G+  A ++
Sbjct:   13 GAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALLA-HEIGFGSKVTTHPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQV 181          
BLAST of CN188829 vs. ExPASy Swiss-Prot
Match: PARK7_BOVIN (Protein DJ-1 OS=Bos taurus GN=PARK7 PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.612e-25
Identity = 72/167 (43.11%), Postives = 99/167 (59.28%), Query Frame = -2
Query:  215 GSEEMEAVIIIDILRRAKANVVVASVEDKLEILASREVKLVADMLIDEAAKLS-YDLIVLPGGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNKL---SDQSEIENRVMVDGNLITSRGPGTSMEFALAIVEKFFGRNKA 703
            G+EEME VI +D++RRA   V VA +  K  +  SR+V +  D  +++A K   YD++VLPGG  GAQ  ++S  +  +LK+Q++      AICA P  +L  H +  G K T  P   +K+   S  S  ENRV  DG ++TSRGPGTS EFAL IVE   G+  A
Sbjct:   13 GAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQEKRKGLIAAICAGPTALLA-HEIGFGSKVTTHPLAKDKMMNGSHYSYSENRVEKDGLILTSRGPGTSFEFALKIVEVLVGKEVA 178          
BLAST of CN188829 vs. ExPASy Swiss-Prot
Match: PARK7_CERAE (Protein DJ-1 OS=Cercopithecus aethiops GN=PARK7 PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.105e-25
Identity = 70/170 (41.18%), Postives = 100/170 (58.82%), Query Frame = -2
Query:  206 GSEEMEAVIIIDILRRAKANVVVASVEDKLEILASREVKLVADMLIDEAAKLS-YDLIVLPGGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNKLSDQSEI---ENRVMVDGNLITSRGPGTSMEFALAIVEKFFGRNKALEL 703
            G+EEME VI +D++RRA   V +A +  K  +  SR+V +  D  +++A K   YD++VLPGG  GAQ  ++S  +  +LK+Q+       AICA P  +L  H +  G K T  P   +K+ +       ENRV  DG ++TSRGPGTS EFALAIVE   G+  A ++
Sbjct:   13 GAEEMETVIPVDVMRRAGIKVTIAGLAGKDPVQCSRDVVICPDASLEDAKKEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALLA-HEIGFGSKVTTHPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQV 181          
BLAST of CN188829 vs. ExPASy Swiss-Prot
Match: PARK7_RAT (Protein DJ-1 OS=Rattus norvegicus GN=Park7 PE=1 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.690e-25
Identity = 73/167 (43.71%), Postives = 100/167 (59.88%), Query Frame = -2
Query:  215 GSEEMEAVIIIDILRRAKANVVVASVEDKLEILASREVKLVADMLIDEAAKLS-YDLIVLPGGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNKL---SDQSEIENRVMVDGNLITSRGPGTSMEFALAIVEKFFGRNKA 703
            G+EEME VI +DI+RRA   V VA +  K  +  SR+V +  D  ++EA     YD++VLPGG  GAQ  ++S  +  +LK+Q+       AICA P  +L  H +  G K T+ P   +K+   S  S  E+RV  DG ++TSRGPGTS EFALAIVE   G++ A
Sbjct:   13 GAEEMETVIPVDIMRRAGIKVTVAGLAGKDPVQCSRDVVICPDTSLEEAKTQGPYDVVVLPGGNLGAQNLSESALVKEILKEQENRKGLIAAICAGPTALLA-HEVGFGCKVTSHPLAKDKMMNGSHYSYSESRVEKDGLILTSRGPGTSFEFALAIVEALSGKDMA 178          
BLAST of CN188829 vs. ExPASy Swiss-Prot
Match: PARK7_MOUSE (Protein DJ-1 OS=Mus musculus GN=Park7 PE=1 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 8.000e-25
Identity = 71/167 (42.51%), Postives = 99/167 (59.28%), Query Frame = -2
Query:  215 GSEEMEAVIIIDILRRAKANVVVASVEDKLEILASREVKLVADMLIDEAAKLS-YDLIVLPGGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNKL---SDQSEIENRVMVDGNLITSRGPGTSMEFALAIVEKFFGRNKA 703
            G+EEME VI +D++RRA   V VA +  K  +  SR+V +  D  +++A     YD++VLPGG  GAQ  ++S  +  +LK+Q+       AICA P  +L  H +  G K T  P   +K+   S  S  E+RV  DG ++TSRGPGTS EFALAIVE   G++ A
Sbjct:   13 GAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVMICPDTSLEDAKTQGPYDVVVLPGGNLGAQNLSESPMVKEILKEQESRKGLIAAICAGPTALLA-HEVGFGCKVTTHPLAKDKMMNGSHYSYSESRVEKDGLILTSRGPGTSFEFALAIVEALVGKDMA 178          
The following BLAST results are available for this feature:
BLAST of CN188829 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
THIJ_ECOLI4.099e-2944.00Protein thiJ OS=Escherichia coli (strain K12) GN=t... [more]
THIJ_SALTY5.354e-2944.00Protein thiJ OS=Salmonella typhimurium GN=thiJ PE=... [more]
PARK7_DANRE1.116e-2641.71Protein DJ-1 OS=Danio rerio GN=park7 PE=2 SV=1[more]
PARK7_MESAU7.236e-2643.71Protein DJ-1 OS=Mesocricetus auratus GN=PARK7 PE=1... [more]
PARK7_CHICK9.450e-2641.14Protein DJ-1 OS=Gallus gallus GN=PARK7 PE=2 SV=1[more]
PARK7_HUMAN1.612e-2541.76Protein DJ-1 OS=Homo sapiens GN=PARK7 PE=1 SV=2[more]
PARK7_BOVIN1.612e-2543.11Protein DJ-1 OS=Bos taurus GN=PARK7 PE=2 SV=1[more]
PARK7_CERAE2.105e-2541.18Protein DJ-1 OS=Cercopithecus aethiops GN=PARK7 PE... [more]
PARK7_RAT4.690e-2543.71Protein DJ-1 OS=Rattus norvegicus GN=Park7 PE=1 SV... [more]
PARK7_MOUSE8.000e-2542.51Protein DJ-1 OS=Mus musculus GN=Park7 PE=1 SV=1[more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0006N20_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006N20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188829 ID=CN188829; Name=CN188829; organism=Citrus sinensis; type=EST; length=707bp
GCGGTTTTTTTTGAACTAAACTCAGGTTTATTCCAAATATTTGAAATGAC
TGTATAAACCCACAGTGAATCCATATTCAAACACGAATTCAAGTTTCCAT
TTCGCCTCTCTACAAGCAGTAGTAATACAGGAATAAATACTATAGTTTAA
TAGTAGTCAGGTCCTCGTACAAATTTTAGGTGCGGGTAAAAAGCAATATC
TTTGCAAGCTCAAGAGCTTTGTTGCGGCCAAAAAACTTCTCCACAATTGC
CAGTGCAAACTCCATGGAAGTTCCTGGCCCTCTGCTGGTGATAAGGTTGC
CATCAACCATAACTCTGTTTTCGATTTCACTTTGATCTGATAGCTTGTTG
CACATGGCAGGAAAAGCCGTAGCTTTTTTACCCTTGAGTAAGCCATGGGG
CTCCAACACTAGTGCTGGGGATGCACATATAGCACCATAAGGTCTATTTG
ATTCCTTTTGCTTCTTTAGCATATTTACCAATTTTTCTGACTTCGCAAAT
GCTTGAGCACCACCAAGTCCACCTGGCAAGACAATCAAATCATACGAAAG
TTTAGCTGCCTCATCAATAAGCATATCTGCCACTAATTTAACTTCACGAG
AAGCCAGAATTTCTAGTTTATCCTCAACTGACGCAACCACAACATTTGCT
TTAGCTCGTCGCAGAATATCAATTATTATAACAGCTTCCATCTCCTCCGA
ACCATTC
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