CN181987

Overview
NameCN181987
Unique NameCN181987
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length725
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2280 contig Csv1_Contig2280:16..740. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181987 vs. ExPASy Swiss-Prot
Match: RL32_ARATH (60S ribosomal protein L3-2 OS=Arabidopsis thaliana GN=ARP2 PE=2 SV=4)

HSP 1 Score: 381.719 bits (979), Expect = 2.132e-105
Identity = 182/227 (80.18%), Postives = 198/227 (87.22%), Query Frame = 2
Query:   44 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFYKNWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGK 724
            MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDP+KPCRLT+FLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPP+         KTPRGLRSLCTVWAQHL+EE+RRRFYKNW               ET++GKKDIQ+QLEKMKKYC+VIRVLAHTQIRKMKGLKQKKAHL EIQ+NGG +A+KVD+A   FEKQ+P+DA+FQKDEMIDIIGVTKGK
Sbjct:    1 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPTKPCRLTSFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPMVVVGVVGYVKTPRGLRSLCTVWAQHLSEELRRRFYKNWAKSKKKAFTRYSKKHETEEGKKDIQSQLEKMKKYCSVIRVLAHTQIRKMKGLKQKKAHLNEIQINGGDIAKKVDYACSLFEKQVPVDAIFQKDEMIDIIGVTKGK 227          
BLAST of CN181987 vs. ExPASy Swiss-Prot
Match: RL31_ARATH (60S ribosomal protein L3-1 OS=Arabidopsis thaliana GN=ARP1 PE=2 SV=5)

HSP 1 Score: 372.859 bits (956), Expect = 9.905e-103
Identity = 181/227 (79.74%), Postives = 196/227 (86.34%), Query Frame = 2
Query:   44 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFYKNWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGK 724
            MSHRKFEHPRHGSLGFLPRKRA+RHRGKVKAFPKDD +KPC+ TAF+GYKAGMTHIVR+VEKPGSKLHKKETCEAVTIIETP +         KTPRGLRSL TVWAQHL+EEVRRRFYKNW               +++DGKK IQAQLEKMKKY TVIRVLAHTQIRKMKGLKQKKAH+MEIQ+NGG++AQKVDFAY FFEKQIPI+AVFQKDEMIDIIGVTKGK
Sbjct:    1 MSHRKFEHPRHGSLGFLPRKRANRHRGKVKAFPKDDQTKPCKFTAFMGYKAGMTHIVREVEKPGSKLHKKETCEAVTIIETPAMVVVGVVAYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWAKSKKKAFTGYAKQYDSEDGKKGIQAQLEKMKKYATVIRVLAHTQIRKMKGLKQKKAHMMEIQINGGTIAQKVDFAYSFFEKQIPIEAVFQKDEMIDIIGVTKGK 227          
BLAST of CN181987 vs. ExPASy Swiss-Prot
Match: RL3_ORYSJ (60S ribosomal protein L3 OS=Oryza sativa subsp. japonica GN=RPL3 PE=2 SV=2)

HSP 1 Score: 367.466 bits (942), Expect = 4.162e-101
Identity = 175/227 (77.09%), Postives = 195/227 (85.90%), Query Frame = 2
Query:   44 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFYKNWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGK 724
            MSHRKFEHPRHGSLGFLPRKR+SRHRGKVK+FPKDD SKPC LT+F+GYKAGMTHIVR+VEKPGSKLHKKETCEAVTIIETPPL         KTPRGLRSL +VWAQHL+EEVRRRFYKNWC              ++D GKK+IQ QLEKMKKY +++RV+AHTQIRKMKGLKQKKAHLMEIQ+NGG++A KVD+ Y FFEK+IP+DAVFQKDEMIDIIGVTKGK
Sbjct:    1 MSHRKFEHPRHGSLGFLPRKRSSRHRGKVKSFPKDDVSKPCHLTSFVGYKAGMTHIVREVEKPGSKLHKKETCEAVTIIETPPLVIVGLVAYVKTPRGLRSLNSVWAQHLSEEVRRRFYKNWCKSKKKAFTKYALKYDSDAGKKEIQMQLEKMKKYASIVRVIAHTQIRKMKGLKQKKAHLMEIQINGGTIADKVDYGYKFFEKEIPVDAVFQKDEMIDIIGVTKGK 227          
BLAST of CN181987 vs. ExPASy Swiss-Prot
Match: RL3_ASPFU (60S ribosomal protein L3 OS=Aspergillus fumigatus GN=rpl3 PE=1 SV=2)

HSP 1 Score: 300.442 bits (768), Expect = 6.248e-81
Identity = 150/226 (66.37%), Postives = 175/226 (77.43%), Query Frame = 2
Query:   44 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFYKNWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKG 721
            MSHRK+E PRHGSL FLPRKRA+RHRGKVK+FPKDDP KP  LTA +GYKAGMT +VRD+++PG+K+HKKE  EAVTIIETPPL         +TPRGLRSL TVWA+HL++EV+RRFYKNW                 ++G   I  +LE++KKYCTV+RVLAHTQIRK   LKQKKAHLMEIQVNGGSVA KVDFA   FEK I ID++F+KDEMID+I VTKG
Sbjct:    1 MSHRKYEAPRHGSLAFLPRKRAARHRGKVKSFPKDDPKKPVHLTASMGYKAGMTTVVRDLDRPGAKMHKKEIVEAVTIIETPPLVAVGVVGYIETPRGLRSLTTVWAEHLSDEVKRRFYKNWYKSKKKAFTKYAKKHAEENG-ASITRELERIKKYCTVVRVLAHTQIRKTP-LKQKKAHLMEIQVNGGSVADKVDFARNLFEKPIEIDSIFEKDEMIDVIAVTKG 224          
BLAST of CN181987 vs. ExPASy Swiss-Prot
Match: RL3_HUMAN (60S ribosomal protein L3 OS=Homo sapiens GN=RPL3 PE=1 SV=2)

HSP 1 Score: 294.664 bits (753), Expect = 3.428e-79
Identity = 142/227 (62.56%), Postives = 177/227 (77.97%), Query Frame = 2
Query:   44 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFYKNWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGK 724
            MSHRKF  PRHGSLGFLPRKR+SRHRGKVK+FPKDDPSKP  LTAFLGYKAGMTHIVR+V++PGSK++KKE  EAVTI+ETPP+         +TPRGLR+  TV+A+H+++E +RRFYKNW               + +DGKK ++     MKKYC VIRV+AHTQ+R +  L+QKKAHLMEIQVNGG+VA+K+D+A    E+Q+P++ VF +DEMID+IGVTKGK
Sbjct:    1 MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDPSKPVHLTAFLGYKAGMTHIVREVDRPGSKVNKKEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFAEHISDECKRRFYKNWHKSKKKAFTKYCKKWQDEDGKKQLEKDFSSMKKYCQVIRVIAHTQMRLLP-LRQKKAHLMEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGK 226          
BLAST of CN181987 vs. ExPASy Swiss-Prot
Match: RL3_RAT (60S ribosomal protein L3 OS=Rattus norvegicus GN=Rpl3 PE=1 SV=3)

HSP 1 Score: 293.123 bits (749), Expect = 9.974e-79
Identity = 141/227 (62.11%), Postives = 176/227 (77.53%), Query Frame = 2
Query:   44 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFYKNWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGK 724
            MSHRKF  PRHGSLGFLPRKR+SRHRGKVK+FPKDDPSKP  LTAFLGYKAGMTHIVR+V++PGSK++KKE  EAVTI+ETPP+         +TPRGLR+  TV+A+H+++E +RRFYKNW               + D GKK ++     MKKYC VIR++AHTQ+R +  L+QKKAHLMEIQVNGG+VA+K+D+A    E+Q+P++ VF +DEMID+IGVTKGK
Sbjct:    1 MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDPSKPVHLTAFLGYKAGMTHIVREVDRPGSKVNKKEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFAEHISDECKRRFYKNWHKSKKKAFTKYCKKWQDDTGKKQLEKDFNSMKKYCQVIRIIAHTQMRLLP-LRQKKAHLMEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGK 226          
BLAST of CN181987 vs. ExPASy Swiss-Prot
Match: RL3B_SCHPO (60S ribosomal protein L3-B OS=Schizosaccharomyces pombe GN=rpl3b PE=2 SV=2)

HSP 1 Score: 293.123 bits (749), Expect = 9.974e-79
Identity = 148/227 (65.20%), Postives = 175/227 (77.09%), Query Frame = 2
Query:   44 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFYKNWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGK 724
            MSH KFE PRHGSLGFLPRKRASR RGKVKAFPKDD SKP  LTAFLGYKAGMTHIVRD+++PGSK+HK+E  EAVTIIETPP+         +TPRGLRSL TVWA+HL+EEV+RRFYKNW               +  +  + I  +LE++KKYC+V+RVLAHTQIRK   L QKKAHLMEIQVNGGSVA KV++A   FEK + I + F+++EMID+IGVT+GK
Sbjct:    1 MSHCKFEQPRHGSLGFLPRKRASRQRGKVKAFPKDDASKPVHLTAFLGYKAGMTHIVRDLDRPGSKMHKREILEAVTIIETPPMVVVGVVGYVETPRGLRSLTTVWAEHLSEEVKRRFYKNW--FKSKKKAFTKYAKKYAESTQSINRELERIKKYCSVVRVLAHTQIRKTP-LAQKKAHLMEIQVNGGSVADKVEWAREHFEKTVDIKSTFEQNEMIDVIGVTRGK 224          
BLAST of CN181987 vs. ExPASy Swiss-Prot
Match: RL3A_SCHPO (60S ribosomal protein L3-A OS=Schizosaccharomyces pombe GN=rpl3a PE=1 SV=2)

HSP 1 Score: 292.738 bits (748), Expect = 1.303e-78
Identity = 147/227 (64.76%), Postives = 175/227 (77.09%), Query Frame = 2
Query:   44 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFYKNWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGK 724
            MSH KFE PRHGSLGFLPRKRASR RGKVKAFPKDD SKP  LTAFLGYKAGMTHIVRD+++PGSK+HK+E  EAVT+IETPP+         +TPRGLRSL TVWA+HL+EEV+RRFYKNW               +  +  + I  +LE++KKYC+V+RVLAHTQIRK   L QKKAHLMEIQVNGGSVA KV++A   FEK + I + F+++EMID+IGVT+GK
Sbjct:    1 MSHCKFEQPRHGSLGFLPRKRASRQRGKVKAFPKDDASKPVHLTAFLGYKAGMTHIVRDLDRPGSKMHKREILEAVTVIETPPMVVVGVVGYVETPRGLRSLTTVWAEHLSEEVKRRFYKNW--FKSKKKAFTKYAKKYAESTQSINRELERIKKYCSVVRVLAHTQIRKTP-LAQKKAHLMEIQVNGGSVADKVEWAREHFEKTVDIKSTFEQNEMIDVIGVTRGK 224          
BLAST of CN181987 vs. ExPASy Swiss-Prot
Match: RL3_NEUCR (60S ribosomal protein L3 OS=Neurospora crassa GN=rpl-3 PE=3 SV=1)

HSP 1 Score: 291.967 bits (746), Expect = 2.222e-78
Identity = 143/226 (63.27%), Postives = 174/226 (76.99%), Query Frame = 2
Query:   44 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFYKNWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKG 721
            MSHRK+E PRHGSL +LPRKRA+RHRGKVK+FPKDD  KP  LTA +GYKAGMT IVRD+++PG+K HKKE  EAVTII+TPP+         +TPRGLRSL TVWA+HL++EV+RRFYKNW                +D+    I  +LE++KKYCTV+RVLAHTQIRK   LKQKKAHLMEIQ+NGGSVA KV+F +G FEK + ID++F+KDE+ID+I VTKG
Sbjct:    1 MSHRKYEAPRHGSLAYLPRKRAARHRGKVKSFPKDDAKKPVHLTAAMGYKAGMTTIVRDLDRPGAKAHKKEVVEAVTIIDTPPMIVVGLVGYIETPRGLRSLTTVWAEHLSDEVKRRFYKNW-YKSKKKAFTKYVKKHSDNNGAAITRELERIKKYCTVVRVLAHTQIRKTP-LKQKKAHLMEIQINGGSVADKVEFGHGLFEKPVSIDSIFEKDEVIDVIAVTKG 224          
BLAST of CN181987 vs. ExPASy Swiss-Prot
Match: RL3_MACFA (60S ribosomal protein L3 OS=Macaca fascicularis GN=RPL3 PE=2 SV=3)

HSP 1 Score: 291.967 bits (746), Expect = 2.222e-78
Identity = 141/227 (62.11%), Postives = 176/227 (77.53%), Query Frame = 2
Query:   44 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFYKNWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGK 724
            MSHRKF  PRHGSLGFLPRKR+SRHRGKVK+FPKDDPSKP  LTAFLGYKAGMTHIVR+V++PGSK++KKE   AVTI+ETPP+         +TPRGLR+  TV+A+H+++E +RRFYKNW               + +DGKK ++     MKKYC VIRV+AHTQ+R +  L+QKKAHLMEIQVNGG+VA+K+D+A    E+Q+P++ VF +DEMID+IGVTKGK
Sbjct:    1 MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDPSKPVHLTAFLGYKAGMTHIVREVDRPGSKVNKKEVVVAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFAEHISDECKRRFYKNWHKSKKKAFTKYCKKWQDEDGKKQLEKDFSSMKKYCQVIRVIAHTQMRLLP-LRQKKAHLMEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGK 226          
The following BLAST results are available for this feature:
BLAST of CN181987 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 74
Match NameE-valueIdentityDescription
RL32_ARATH2.132e-10580.1860S ribosomal protein L3-2 OS=Arabidopsis thaliana... [more]
RL31_ARATH9.905e-10379.7460S ribosomal protein L3-1 OS=Arabidopsis thaliana... [more]
RL3_ORYSJ4.162e-10177.0960S ribosomal protein L3 OS=Oryza sativa subsp. ja... [more]
RL3_ASPFU6.248e-8166.3760S ribosomal protein L3 OS=Aspergillus fumigatus ... [more]
RL3_HUMAN3.428e-7962.5660S ribosomal protein L3 OS=Homo sapiens GN=RPL3 P... [more]
RL3_RAT9.974e-7962.1160S ribosomal protein L3 OS=Rattus norvegicus GN=R... [more]
RL3B_SCHPO9.974e-7965.2060S ribosomal protein L3-B OS=Schizosaccharomyces ... [more]
RL3A_SCHPO1.303e-7864.7660S ribosomal protein L3-A OS=Schizosaccharomyces ... [more]
RL3_NEUCR2.222e-7863.2760S ribosomal protein L3 OS=Neurospora crassa GN=r... [more]
RL3_MACFA2.222e-7862.1160S ribosomal protein L3 OS=Macaca fascicularis GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001M09_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001M09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181987 ID=CN181987; Name=CN181987; organism=Citrus sinensis; type=EST; length=725bp
GAGGCTTTCATCAGCAACGCAAGAGTTCTAAGTGCCGAGTAGGATGTCTC
ATCGTAAGTTTGAACACCCAAGACATGGTTCTTTAGGATTTCTCCCAAGG
AAGAGAGCATCCCGCCACAGAGGAAAAGTGAAGGCCTTTCCCAAGGATGA
CCCATCAAAACCATGCAGATTAACTGCTTTTTTAGGCTACAAAGCTGGAA
TGACCCATATTGTCAGAGATGTTGAAAAGCCAGGATCAAAGCTGCACAAG
AAAGAAACATGTGAAGCAGTAACTATTATTGAAACACCACCCCTGGTGGT
TGTTGGGGTCGTTGGTTATGTCAAGACACCCCGTGGGCTTCGTTCTCTCT
GCACTGTTTGGGCTCAGCATCTCAATGAGGAGGTTAGGAGAAGGTTTTAC
AAGAACTGGTGCAAATCGAAGAAGAAGGCCTTCACTAAGTATACAAAGAA
GTATGAAACTGATGATGGAAAGAAAGACATTCAGGCTCAGCTGGAGAAAA
TGAAGAAATACTGCACCGTGATTCGTGTTTTGGCCCATACCCAGATCAGA
AAAATGAAGGGACTGAAGCAGAAGAAGGCCCATCTGATGGAGATCCAGGT
CAATGGTGGATCAGTTGCCCAGAAGGTTGACTTTGCTTATGGTTTCTTCG
AGAAACAGATTCCTATTGATGCTGTGTTCCAGAAAGATGAGATGATTGAC
ATTATTGGTGTGACCAAAGGTAAGG
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