CN181985

Overview
NameCN181985
Unique NameCN181985
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length694
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2367 contig Csv1_Contig2367:4..696. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181985 vs. ExPASy Swiss-Prot
Match: 4CLL1_ARATH (4-coumarate--CoA ligase-like 1 OS=Arabidopsis thaliana GN=4CLL1 PE=2 SV=1)

HSP 1 Score: 263.462 bits (672), Expect = 7.897e-70
Identity = 129/193 (66.84%), Postives = 162/193 (83.94%), Query Frame = 2
Query:   44 DEEHIFRSRHPAVPVPENVTLPDFVLQDTELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGVFSGANPTAHASELKKQVDAADAKLIVSYAPIYEKVKGLGLPIIVLGEERIESAINWSELIEAADKAGNNFSNDDDVKQTDLCALPFSSGTTGISKG 622
            D E+IFRS +P+VP+P+ +TLP+FVLQ  E Y + VAFVEAV+GKA TY  V RDT+  AKAL SLGLRKGQV++VVLPNVAEYGI+ALGIM+AGGVFSGANPTA  SE+KKQV+A+ A+ I++ A  YEKVK LGLP+IVLGEE+IE A+NW +L+EA DK G+  ++++++ QTDLCALPFSSGTTG+ KG
Sbjct:    8 DNEYIFRSLYPSVPIPDKLTLPEFVLQGVEEYTENVAFVEAVTGKAVTYGDVVRDTKRLAKALTSLGLRKGQVMVVVLPNVAEYGIIALGIMSAGGVFSGANPTALVSEIKKQVEASGARGIITDATNYEKVKSLGLPVIVLGEEKIEGAVNWKDLLEAGDKCGD--TDNEEILQTDLCALPFSSGTTGLQKG 198          
BLAST of CN181985 vs. ExPASy Swiss-Prot
Match: 4CLL9_ORYSJ (4-coumarate--CoA ligase-like 9 OS=Oryza sativa subsp. japonica GN=4CLL9 PE=2 SV=2)

HSP 1 Score: 224.942 bits (572), Expect = 2.495e-65
Identity = 112/205 (54.63%), Postives = 154/205 (75.12%), Query Frame = 2
Query:   14 SVPVPLAAAHDEEHIFRSRHPAVPVPENVTLPDFVLQDTELYADKVAFVEAVSG-KAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGVFSGANPTAHASELKKQVDAADAKLIVSYAPIYEKVKGLGLPIIVLGE-ERIESAINWSELIEAADKAGNNFSNDDDVKQTDLCALPFSSGTTGISKG 622
            +VP  +    ++EH+FRSR P V VP+ VT+P+FVL   E YAD+VA VEA +G ++YTY +VARDT  FA+ALRS+G+RKG VV+V LPN+A Y +V+LGIM+AG VFSG NP A A+E+KKQV+ ++AKL+V+    ++KVK  G+P+I +G+ ER+  AI+W  L+ AAD+ G      D  +Q+DLCALP+SSGTTG+SKG
Sbjct:    5 AVPAMVVEEEEQEHVFRSRFPPVAVPDGVTVPEFVLDGAEAYADRVALVEAAAGGRSYTYGEVARDTARFARALRSVGVRKGHVVVVALPNLAVYPVVSLGIMSAGAVFSGVNPRALAAEIKKQVEDSEAKLVVANEVAFDKVKDAGVPVIGVGDRERMPGAISWDGLLAAADRTGAGVVPVDAAQQSDLCALPYSSGTTGVSKG 209          

HSP 2 Score: 45.0542 bits (105), Expect = 2.495e-65
Identity = 19/27 (70.37%), Postives = 23/27 (85.19%), Query Frame = 3
Query:  609 GFRKGVMLTHRNLVGNLCSTLFSVVPE 689
            G  KGVML+HRNLV NLCS++F+V PE
Sbjct:  205 GVSKGVMLSHRNLVSNLCSSMFAVAPE 231          
BLAST of CN181985 vs. ExPASy Swiss-Prot
Match: 4CL3_ARATH (4-coumarate--CoA ligase 3 OS=Arabidopsis thaliana GN=4CL3 PE=1 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.103e-26
Identity = 69/191 (36.13%), Postives = 105/191 (54.97%), Query Frame = 2
Query:   56 IFRSRHPAVPVPENVTLPDFVLQDTELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGVFSGANPTAHASELKKQVDAADAKLIVSYAPIYEKVKGLG--LPIIVLGEERIESAINWSELIEAADKAGNNFSNDDDVKQTDLCALPFSSGTTGISKG 622
            IFRS+ P + +P ++ L  +  +     +DK   +   +GK+YTY +     R  A  L  LG+RKG V++++L N AE+    +G    G V + ANP   + EL KQ+ ++ AKLI++++   +K+K LG  L +I   E   E+ + +S LI   D   N F    D+   D  ALPFSSGTTG+ KG
Sbjct:   34 IFRSKLPDIDIPNHLPLHTYCFEKLSSVSDKPCLIVGSTGKSYTYGETHLICRRVASGLYKLGIRKGDVIMILLQNSAEFVFSFMGASMIGAVSTTANPFYTSQELYKQLKSSGAKLIITHSQYVDKLKNLGENLTLITTDEPTPENCLPFSTLI--TDDETNPFQETVDIGGDDAAALPFSSGTTGLPKG 222          
BLAST of CN181985 vs. ExPASy Swiss-Prot
Match: 4CLL7_ARATH (4-coumarate--CoA ligase-like 7 OS=Arabidopsis thaliana GN=4CLL7 PE=1 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 5.925e-25
Identity = 67/223 (30.04%), Postives = 119/223 (53.36%), Query Frame = 2
Query:   35 AAHDEEHIFRSRHPAVPVPE--NVTLPDFVLQDTELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGVFSGANPTAHASELKKQVDAADAKLIVSYAPIYEKVKGLGLPIIVLGEE-----------RIESAINWSELIEAADKAGNNFSNDDDVKQTDLCALPFSSGTTGISKGCDANTQKFGGQSML 664
            + +  + I+RS  P + +P+  N +L  F+ +++  Y  K+A  ++ +G + T++Q+       A     LG+RK  VV++  PN  ++ +  L + A GGVF+ ANP    +E+ KQ+  ++ K+I+S   +++K+KG  LP+++LG +           +I S  N  EL E   +         ++KQ+D  AL +SSGTTG SKG +     F   S++
Sbjct:    4 SGYGRDGIYRSLRPTLVLPKDPNTSLVSFLFRNSSSYPSKLAIADSDTGDSLTFSQLKSAVARLAHGFHRLGIRKNDVVLIFAPNSYQFPLCFLAVTAIGGVFTTANPLYTVNEVSKQIKDSNPKIIISVNQLFDKIKGFDLPVVLLGSKDTVEIPPGSNSKILSFDNVMELSEPVSE-----YPFVEIKQSDTAALLYSSGTTGTSKGVELTHGNFIAASLM 221          
BLAST of CN181985 vs. ExPASy Swiss-Prot
Match: 4CL4_ORYSJ (Probable 4-coumarate--CoA ligase 4 OS=Oryza sativa subsp. japonica GN=4CL4 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 9.468e-25
Identity = 64/201 (31.84%), Postives = 106/201 (52.74%), Query Frame = 2
Query:   32 AAAHDEEHIFRSRHPAVPVPENVTLPDFVLQDTELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGVFSGANPTAHASELKKQVDAADAKLIVSYAPIYEKVKGL----GLPIIVLGEERIESAINWSELIEAADKAGNNFSNDDDVKQTDLCALPFSSGTTGISKG 622
            AA  +E  +FRS+ P + +P ++TL  +  +     A +   ++  +G  Y+Y +V   +R  A  LR LG+ KG VV+ +L N  E+    LG    G   + ANP     E+ +Q  AA A++IV+ A   EKV+G     G+P++ +  +  +  + + E +   D +      D++V   D+ ALP+SSGTTG+ KG
Sbjct:   10 AAQEEETVVFRSKLPDIEIPSHLTLQAYCFEKLPEVAARPCLIDGQTGAVYSYGEVEELSRRAAAGLRRLGVGKGDVVMSLLRNCPEFAFTFLGAARLGAATTTANPFYTPHEIHRQASAAGARVIVTEACAVEKVRGFAADRGIPVVAVDGD-FDGCVGFGEAM--LDASIEPLDADEEVHPDDVVALPYSSGTTGLPKG 207          

HSP 2 Score: 26.1794 bits (56), Expect = 9.468e-25
Identity = 12/28 (42.86%), Postives = 17/28 (60.71%), Query Frame = 3
Query:  609 GFRKGVMLTHRNLVGNLCSTLFSVVPEM 692
            G  KGVMLTHR+LV ++   +    P +
Sbjct:  203 GLPKGVMLTHRSLVTSVAQQVDGENPNL 230          
BLAST of CN181985 vs. ExPASy Swiss-Prot
Match: 4CL2_ARATH (4-coumarate--CoA ligase 2 OS=Arabidopsis thaliana GN=4CL2 PE=1 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 1.724e-24
Identity = 66/193 (34.20%), Postives = 110/193 (56.99%), Query Frame = 2
Query:   56 IFRSRHPAVPVPENVTLPDFVLQDTELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGVFSGANPTAHASELKKQVDAADAKLIVSYAPIYEKVKGL---GLPIIVLGEERI-ESAINWSELIEAADKAGNNFSNDDDVKQTDLCALPFSSGTTGISKG 622
            IFRSR P + +P ++ L D++ ++   +A K   +   +G+ YTYA V   +R  A  L +LG+++  VV+++LPN  E  +  L     G + + ANP    +E+ KQ  A+ AKLIV+ +   +K+K L   G+ I+    + I E+ + +SEL ++ +   +  S  + +   D+ ALPFSSGTTG+ KG
Sbjct:   22 IFRSRLPDIYIPNHLPLHDYIFENISEFAAKPCLINGPTGEVYTYADVHVTSRKLAAGLHNLGVKQHDVVMILLPNSPEVVLTFLAASFIGAITTSANPFFTPAEISKQAKASAAKLIVTQSRYVDKIKNLQNDGVLIVTTDSDAIPENCLRFSELTQSEEPRVD--SIPEKISPEDVVALPFSSGTTGLPKG 212          
BLAST of CN181985 vs. ExPASy Swiss-Prot
Match: 4CL2_PETCR (4-coumarate--CoA ligase 1 OS=Petroselinum crispum GN=4CL2 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 4.601e-24
Identity = 64/198 (32.32%), Postives = 110/198 (55.56%), Query Frame = 2
Query:   38 AHDEEHIFRSRHPAVPVPENVTLPDFVLQDTELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGVFSGANPTAHASELKKQVDAADAKLIVSYAPIYEKVKGLGLP---IIVLGEERIESAINWSELIEAADKAGNNFSNDDDVKQTDLCALPFSSGTTGISKG 622
            A  E+ IFRS+ P + +P+++ L  +  ++     DK   +   +G+ +TY+QV   +R  A  L  LG+++G  ++++LPN  EY    LG    G + + ANP   ++E+ KQ+ A+ AKLI++ A   +KVK         I+  ++  +  +++S+L+EA +        D D    D+ ALP+SSGTTG+ KG
Sbjct:    6 APKEDLIFRSKLPDIYIPKHLPLHTYCFENISKVGDKSCLINGATGETFTYSQVELLSRKVASGLNKLGIQQGDTIMLLLPNSPEYFFAFLGASYRGAISTMANPFFTSAEVIKQLKASLAKLIITQACYVDKVKDYAAEKNIQIICIDDAPQDCLHFSKLMEADESEMPEVVIDSD----DVVALPYSSGTTGLPKG 199          

HSP 2 Score: 24.2534 bits (51), Expect = 4.601e-24
Identity = 10/14 (71.43%), Postives = 11/14 (78.57%), Query Frame = 3
Query:  609 GFRKGVMLTHRNLV 650
            G  KGVMLTH+ LV
Sbjct:  195 GLPKGVMLTHKGLV 208          
BLAST of CN181985 vs. ExPASy Swiss-Prot
Match: 4CL1_PETCR (4-coumarate--CoA ligase 1 OS=Petroselinum crispum GN=4CL1 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 5.987e-24
Identity = 63/198 (31.82%), Postives = 110/198 (55.56%), Query Frame = 2
Query:   38 AHDEEHIFRSRHPAVPVPENVTLPDFVLQDTELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGVFSGANPTAHASELKKQVDAADAKLIVSYAPIYEKVKGLGLP---IIVLGEERIESAINWSELIEAADKAGNNFSNDDDVKQTDLCALPFSSGTTGISKG 622
            A  E+ IFRS+ P + +P+++ L  +  ++     DK   +   +G+ +TY+QV   +R  A  L  LG+++G  ++++LPN  EY    LG    G + + ANP   ++E+ KQ+ A+ AKLI++ A   +KVK         I+  ++  +  +++S+L+EA +        + D    D+ ALP+SSGTTG+ KG
Sbjct:    6 APKEDLIFRSKLPDIYIPKHLPLHTYCFENISKVGDKSCLINGATGETFTYSQVELLSRKVASGLNKLGIQQGDTIMLLLPNSPEYFFAFLGASYRGAISTMANPFFTSAEVIKQLKASQAKLIITQACYVDKVKDYAAEKNIQIICIDDAPQDCLHFSKLMEADESEMPEVVINSD----DVVALPYSSGTTGLPKG 199          

HSP 2 Score: 24.2534 bits (51), Expect = 5.987e-24
Identity = 10/14 (71.43%), Postives = 11/14 (78.57%), Query Frame = 3
Query:  609 GFRKGVMLTHRNLV 650
            G  KGVMLTH+ LV
Sbjct:  195 GLPKGVMLTHKGLV 208          
BLAST of CN181985 vs. ExPASy Swiss-Prot
Match: 4CL_PINTA (4-coumarate--CoA ligase OS=Pinus taeda GN=4CL PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 2.234e-23
Identity = 61/194 (31.44%), Postives = 104/194 (53.61%), Query Frame = 2
Query:   50 EHIFRSRHPAVPVPENVTLPDFVLQDTELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGVFSGANPTAHASELKKQVDAADAKLIVSYAPIYEKVKGL---GLPIIVLGEERIESAINWSELIEAADKAGNNFSNDDDVKQTDLCALPFSSGTTGISKG 622
            EH++RS+ P + + +++ L  +  +    +AD+   ++  + + Y +++V   +R  A  L  LGL++GQVV+++LPN  E+  V +G    G + + ANP     E+ KQ  AA A++IV+ A   EK+  L    + +I + +   E   + S L EA +          D    D+ ALP+SSGTTG+ KG
Sbjct:    9 EHLYRSKLPDIEISDHLPLHSYCFERVAEFADRPCLIDGATDRTYCFSEVELISRKVAAGLAKLGLQQGQVVMLLLPNCIEFAFVFMGASVRGAIVTTANPFYKPGEIAKQAKAAGARIIVTLAAYVEKLADLQSHDVLVITIDDAPKEGCQHISVLTEADETQCPAVKIHPD----DVVALPYSSGTTGLPKG 198          

HSP 2 Score: 25.409 bits (54), Expect = 2.234e-23
Identity = 11/28 (39.29%), Postives = 16/28 (57.14%), Query Frame = 3
Query:  609 GFRKGVMLTHRNLVGNLCSTLFSVVPEM 692
            G  KGVMLTH+ LV ++   +    P +
Sbjct:  194 GLPKGVMLTHKGLVSSVAQQVDGENPNL 221          
BLAST of CN181985 vs. ExPASy Swiss-Prot
Match: 4CL1_ARATH (4-coumarate--CoA ligase 1 OS=Arabidopsis thaliana GN=4CL1 PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 3.779e-23
Identity = 60/202 (29.70%), Postives = 110/202 (54.46%), Query Frame = 2
Query:   41 HDEEHIFRSRHPAVPVPENVTLPDFVLQDTELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGVFSGANPTAHASELKKQVDAADAKLIVSYAPIYEKVKGL----GLPIIVLGEERI----ESAINWSELIEAADKAGNNFSNDDDVKQTDLCALPFSSGTTGISKG 622
            ++ + IFRS+ P + +P +++L D++ Q+   +A K   +   +G  YTY+ V   +R  A     LG+ +  VV+++LPN  E+ +  L     G   + ANP    +E+ KQ  A++ KLI++ A   +K+K L    G+ I+ + +       E  + ++EL ++  +A +   +  ++   D+ ALP+SSGTTG+ KG
Sbjct:   19 NNSDVIFRSKLPDIYIPNHLSLHDYIFQNISEFATKPCLINGPTGHVYTYSDVHVISRQIAANFHKLGVNQNDVVMLLLPNCPEFVLSFLAASFRGATATAANPFFTPAEIAKQAKASNTKLIITEARYVDKIKPLQNDDGVVIVCIDDNESVPIPEGCLRFTELTQSTTEA-SEVIDSVEISPDDVVALPYSSGTTGLPKG 219          

HSP 2 Score: 24.6386 bits (52), Expect = 3.779e-23
Identity = 11/28 (39.29%), Postives = 16/28 (57.14%), Query Frame = 3
Query:  609 GFRKGVMLTHRNLVGNLCSTLFSVVPEM 692
            G  KGVMLTH+ LV ++   +    P +
Sbjct:  215 GLPKGVMLTHKGLVTSVAQQVDGENPNL 242          
The following BLAST results are available for this feature:
BLAST of CN181985 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
4CLL1_ARATH7.897e-7066.844-coumarate--CoA ligase-like 1 OS=Arabidopsis thal... [more]
4CLL9_ORYSJ2.495e-6554.634-coumarate--CoA ligase-like 9 OS=Oryza sativa sub... [more]
4CL3_ARATH4.103e-2636.134-coumarate--CoA ligase 3 OS=Arabidopsis thaliana ... [more]
4CLL7_ARATH5.925e-2530.044-coumarate--CoA ligase-like 7 OS=Arabidopsis thal... [more]
4CL4_ORYSJ9.468e-2531.84Probable 4-coumarate--CoA ligase 4 OS=Oryza sativa... [more]
4CL2_ARATH1.724e-2434.204-coumarate--CoA ligase 2 OS=Arabidopsis thaliana ... [more]
4CL2_PETCR4.601e-2432.324-coumarate--CoA ligase 1 OS=Petroselinum crispum ... [more]
4CL1_PETCR5.987e-2431.824-coumarate--CoA ligase 1 OS=Petroselinum crispum ... [more]
4CL_PINTA2.234e-2331.444-coumarate--CoA ligase OS=Pinus taeda GN=4CL PE=2... [more]
4CL1_ARATH3.779e-2329.704-coumarate--CoA ligase 1 OS=Arabidopsis thaliana ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001M08_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001M08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181985 ID=CN181985; Name=CN181985; organism=Citrus sinensis; type=EST; length=694bp
GAGGAACTCGTTCTCAGTTCCCGTGCCATTAGCAGCAGCACACGATGAAG
AGCACATCTTTCGTAGTAGACATCCTGCAGTGCCAGTGCCCGAAAACGTG
ACGCTGCCTGATTTCGTGCTCCAAGATACTGAGTTGTACGCGGACAAGGT
GGCTTTTGTGGAAGCCGTGAGTGGAAAAGCATACACTTATGCCCAAGTGG
CACGGGACACCAGAGGATTTGCAAAGGCTTTGAGGTCTCTTGGGTTGAGA
AAGGGGCAAGTAGTGATTGTAGTGCTACCTAATGTTGCTGAGTATGGCAT
TGTTGCACTTGGGATCATGGCTGCTGGTGGAGTCTTTTCGGGCGCTAATC
CAACAGCACATGCTTCTGAACTTAAGAAGCAAGTAGATGCTGCTGATGCC
AAGTTGATTGTATCGTATGCACCAATTTATGAAAAGGTAAAAGGCCTGGG
TCTACCGATAATTGTACTCGGTGAAGAACGCATTGAAAGTGCCATAAATT
GGAGCGAGCTTATTGAAGCAGCTGACAAAGCAGGCAACAACTTTTCCAAC
GACGATGATGTAAAGCAAACCGATCTATGTGCCCTTCCATTCTCATCGGG
CACCACAGGGATTTCGAAAGGGTGTGATGCTAACACACAGAAATTTGGTG
GGCAATCTATGCTCCACGCTCTTCAGTGTAGTCCCTGAAATGAT
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