CN188827

Overview
NameCN188827
Unique NameCN188827
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length751
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8225 contig Csv1_Contig8225:103..852. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188827 vs. ExPASy Swiss-Prot
Match: IDH5_ARATH (Isocitrate dehydrogenase [NAD] catalytic subunit 5, mitochondrial OS=Arabidopsis thaliana GN=IDH5 PE=1 SV=1)

HSP 1 Score: 429.869 bits (1104), Expect = 7.312e-120
Identity = 214/236 (90.68%), Postives = 221/236 (93.64%), Query Frame = 1
Query:   43 LLGSRSRQILSATNPNPNLALPIARAFSSDITPITATLFPGDGIGPEIAESVKQVFRTAEVPVEWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATPIGKGHRSLNLTLRKELNLYANVRPCYSLPGYKTRYDDVNLITIRENTEGEYSGLEHQVVRGVVESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDN 750
            L+G+RS QIL A N +   A  +ARAF S  TPITATLFPGDGIGPEIAESVK+VF TA VP+EWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATPIGKGHRSLNLTLRKELNLYANVRPCYSLPGYKTRYDDV+LITIRENTEGEYSGLEHQVVRGVVESLKIITRQASLRVAEYAF YAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDN
Sbjct:   11 LIGNRSTQILGAVNSSSGAASSVARAFCSSTTPITATLFPGDGIGPEIAESVKKVFTTAGVPIEWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATPIGKGHRSLNLTLRKELNLYANVRPCYSLPGYKTRYDDVDLITIRENTEGEYSGLEHQVVRGVVESLKIITRQASLRVAEYAFLYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDN 246          
BLAST of CN188827 vs. ExPASy Swiss-Prot
Match: LEU3_SOLTU (3-isopropylmalate dehydrogenase, chloroplastic OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 401.364 bits (1030), Expect = 2.785e-111
Identity = 197/214 (92.06%), Postives = 204/214 (95.33%), Query Frame = 1
Query:  115 RAFSSDITP--ITATLFPGDGIGPEIAESVKQVFRTAEVPVEWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATPIGKGHRSLNLTLRKELNLYANVRPCYSLPGYKTRYDDVNLITIRENTEGEYSGLEHQVVRGVVESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDN 750
            R F+S+     I ATLFPGDGIGPEIAESV+Q+F+ AEVP+EWEEHYVGTE+DPRT SFLTWESLESVRRNKVGLKGPMATPIGKGHRSLNLTLRKELNLYANVRPCYSLPGYKTRYDDVNLITIRENTEGEYSGLEHQVVRGVVESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEI YEEVVIDN
Sbjct:   26 RTFTSESNSNLIRATLFPGDGIGPEIAESVRQIFKVAEVPIEWEEHYVGTEVDPRTNSFLTWESLESVRRNKVGLKGPMATPIGKGHRSLNLTLRKELNLYANVRPCYSLPGYKTRYDDVNLITIRENTEGEYSGLEHQVVRGVVESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEIKYEEVVIDN 239          
BLAST of CN188827 vs. ExPASy Swiss-Prot
Match: IDH6_ARATH (Isocitrate dehydrogenase [NAD] catalytic subunit 6, mitochondrial OS=Arabidopsis thaliana GN=IDH6 PE=1 SV=2)

HSP 1 Score: 382.489 bits (981), Expect = 1.339e-105
Identity = 186/236 (78.81%), Postives = 212/236 (89.83%), Query Frame = 1
Query:   43 LLGSRSRQILSATNPNPNLALPIARAFSSDITPITATLFPGDGIGPEIAESVKQVFRTAEVPVEWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATPIGKGHRSLNLTLRKELNLYANVRPCYSLPGYKTRYDDVNLITIRENTEGEYSGLEHQVVRGVVESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDN 750
            L+G+ S QIL  ++ +    + ++RAF S  TPI ATLFPGDGIGPEIAESVKQVF  A+V ++W+E +VGTE+DPRT SFLTW++L+SV +NKVGLKGPMATPIGKGHRSLNLTLRKELNLYANVRPCYSLPGYKTRYDDV+LITIRENTEGEYSGLEHQVV+GVVESLKIITR+AS+RVAEYAF YAKTHGR++VSAIHKANIMQKTDGLFL+CC EVA KYPEI YE+VVIDN
Sbjct:   11 LIGNGSSQILGTSSSSSGPFISVSRAFFSSSTPIKATLFPGDGIGPEIAESVKQVFTAADVVIDWDEQFVGTEVDPRTNSFLTWDNLQSVLKNKVGLKGPMATPIGKGHRSLNLTLRKELNLYANVRPCYSLPGYKTRYDDVDLITIRENTEGEYSGLEHQVVKGVVESLKIITRKASMRVAEYAFLYAKTHGRKKVSAIHKANIMQKTDGLFLQCCDEVAAKYPEIYYEKVVIDN 246          
BLAST of CN188827 vs. ExPASy Swiss-Prot
Match: IDH3A_DROME (Probable isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial OS=Drosophila melanogaster GN=l(1)G0156 PE=2 SV=1)

HSP 1 Score: 263.077 bits (671), Expect = 1.184e-69
Identity = 131/237 (55.27%), Postives = 177/237 (74.68%), Query Frame = 1
Query:   43 LLGSRSRQILSATNPNPNL-ALPIA-RAFSSDITPITATLFPGDGIGPEIAESVKQVFRTAEVPVEWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATPIGKGHRSLNLTLRKELNLYANVRPCYSLPGYKTRYDDVNLITIRENTEGEYSGLEHQVVRGVVESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVID 747
            L+ +R    ++AT     + A P A R++SS    +T  L PGDGIGPEI+ +V+++F  A VP+EWE   V     P  +  +   +++SV  NK+GLKGP+ TP+GKGHRSLNL LRKE NLYANVRPC SL GYKT YDDV+++TIRENTEGEYSG+EH++V GVV+S+K+IT +AS RVAEYAF YAK + R++V+ +HKANIM+ +DGLFL+C R++A+K+PEI +EE  +D
Sbjct:   15 LIAARDAPAVTATPAVSQVNATPAASRSYSSGTKKVT--LIPGDGIGPEISAAVQKIFTAANVPIEWEAVDVTPVRGPDGKFGIPQAAIDSVNTNKIGLKGPLMTPVGKGHRSLNLALRKEFNLYANVRPCRSLEGYKTLYDDVDVVTIRENTEGEYSGIEHEIVDGVVQSIKLITEEASKRVAEYAFQYAKNNNRKKVTVVHKANIMRMSDGLFLRCVRDMAQKFPEIQFEEKYLD 249          
BLAST of CN188827 vs. ExPASy Swiss-Prot
Match: IDHA_DICDI (Isocitrate dehydrogenase [NAD] regulatory subunit A, mitochondrial OS=Dictyostelium discoideum GN=idhA PE=3 SV=1)

HSP 1 Score: 258.84 bits (660), Expect = 2.232e-68
Identity = 124/213 (58.22%), Postives = 166/213 (77.93%), Query Frame = 1
Query:  115 RAFSSDITPIT-ATLFPGDGIGPEIAESVKQVFRTAEVPVEWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATPIGKGHRSLNLTLRKELNLYANVRPCYSLPGYKTRYDDVNLITIRENTEGEYSGLEHQVVRGVVESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDN 750
            R +SS  + I   TL PGDGIGPEI+ESVK+VF   + P+EWE       +D  T   ++ E +ES+ +NK+GLKGP++TPIG GH+SLNL LRK  NLYAN+RPC S+PG+KTRY++VN + +RENTEGEYSG+E+Q V+GV +S+KIIT++AS R+A YAF YA  +GR++V+ IHKANIM+++DGLF+K CREV+ +YP I YEE+ IDN
Sbjct:   14 RNYSSSTSKIQKVTLIPGDGIGPEISESVKRVFSAVKAPIEWET----VVVDANTG--ISKEVIESISKNKIGLKGPISTPIGTGHQSLNLGLRKTFNLYANIRPCLSIPGHKTRYNNVNTVVVRENTEGEYSGIENQPVKGVAQSIKIITKEASTRIAHYAFQYALANGRKKVTCIHKANIMKQSDGLFVKSCREVSTRYPSIKYEELTIDN 220          
BLAST of CN188827 vs. ExPASy Swiss-Prot
Match: IDH2_SCHPO (Isocitrate dehydrogenase [NAD] subunit 2, mitochondrial OS=Schizosaccharomyces pombe GN=idh2 PE=1 SV=1)

HSP 1 Score: 241.506 bits (615), Expect = 3.688e-63
Identity = 114/202 (56.44%), Postives = 154/202 (76.24%), Query Frame = 1
Query:  145 TATLFPGDGIGPEIAESVKQVFRTAEVPVEWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATPIGKGHRSLNLTLRKELNLYANVRPCYSLPGYKTRYDDVNLITIRENTEGEYSGLEHQVVRGVVESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDN 750
            T T+  GDGIGPEIA+SV+++F+ A+VP+EWE   V   +   T + +  ++ ESVR+NKV LKGP+ATPIGKGH S+NLTLR+   L+ANVRPC S+ GYKT YD+VN + IRENTEGEYSG+EH+V+ GVV+S+K+ITR AS RV  YAF YA+  G+  ++ +HKA IM+  DGLFL+C +E+A +YP+I   E ++DN
Sbjct:   47 TVTMIAGDGIGPEIAQSVERIFKAAKVPIEWERVKVYPILKNGTTT-IPDDAKESVRKNKVALKGPLATPIGKGHVSMNLTLRRTFGLFANVRPCVSITGYKTPYDNVNTVLIRENTEGEYSGIEHEVIPGVVQSIKLITRAASERVIRYAFQYARQTGKNNITVVHKATIMRMADGLFLECAKELAPEYPDIELREEILDN 247          
BLAST of CN188827 vs. ExPASy Swiss-Prot
Match: IDH3A_MOUSE (Isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial OS=Mus musculus GN=Idh3a PE=1 SV=1)

HSP 1 Score: 241.121 bits (614), Expect = 4.817e-63
Identity = 116/213 (54.46%), Postives = 156/213 (73.24%), Query Frame = 1
Query:  109 IARAFSSDITPITATLFPGDGIGPEIAESVKQVFRTAEVPVEWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATPIGKGHRSLNLTLRKELNLYANVRPCYSLPGYKTRYDDVNLITIRENTEGEYSGLEHQVVRGVVESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVID 747
            + R F+  +   T TL PGDGIGPEI+ SV ++F  A+ P++WEE  V     P  +  +  E+ ES+ +NK+GLKGP+ TPI  GH S+NL LRK  +LYANVRPC S+ GYKT Y DVN++TIRENTEGEYSG+EH +V GVV+S+K+IT +AS R+AE+AF YA+ + R  V+A+HKANIM+ +DGLFL+ CREVAE   +I + E+ +D
Sbjct:   23 VTRGFAGGVQ--TVTLIPGDGIGPEISASVMKIFDAAKAPIQWEERNVTAIQGPGGKWMIPPEAKESMDKNKMGLKGPLKTPIAAGHPSMNLLLRKTFDLYANVRPCVSIEGYKTPYTDVNIVTIRENTEGEYSGIEHVIVDGVVQSIKLITEEASKRIAEFAFEYARNNHRSNVTAVHKANIMRMSDGLFLQKCREVAENCKDIKFNEMYLD 233          
BLAST of CN188827 vs. ExPASy Swiss-Prot
Match: IDH3A_RAT (Isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial OS=Rattus norvegicus GN=Idh3a PE=1 SV=1)

HSP 1 Score: 239.58 bits (610), Expect = 1.402e-62
Identity = 116/213 (54.46%), Postives = 155/213 (72.77%), Query Frame = 1
Query:  109 IARAFSSDITPITATLFPGDGIGPEIAESVKQVFRTAEVPVEWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATPIGKGHRSLNLTLRKELNLYANVRPCYSLPGYKTRYDDVNLITIRENTEGEYSGLEHQVVRGVVESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVID 747
            + R F+  +   T TL PGDGIGPEI+ SV ++F  A+ P++WEE  V     P  +  +  E+ ES+ +NK+GLKGP+ TPI  GH S+NL LRK  +LYANVRPC S+ GYKT Y DVN++TIRENTEGEYSG+EH +V GVV+S+K+IT  AS R+AE+AF YA+ + R  V+A+HKANIM+ +DGLFL+ CREVAE   +I + E+ +D
Sbjct:   23 VTRGFAGGVQ--TVTLIPGDGIGPEISASVMKIFDAAKAPIQWEERNVTAIQGPGGKWMIPPEAKESMDKNKMGLKGPLKTPIAAGHPSMNLLLRKTFDLYANVRPCVSIEGYKTPYTDVNIVTIRENTEGEYSGIEHVIVDGVVQSIKLITEGASKRIAEFAFEYARNNHRSNVTAVHKANIMRMSDGLFLQKCREVAENCKDIKFNEMYLD 233          
BLAST of CN188827 vs. ExPASy Swiss-Prot
Match: IDH3A_BOVIN (Isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial OS=Bos taurus GN=IDH3A PE=1 SV=1)

HSP 1 Score: 239.58 bits (610), Expect = 1.402e-62
Identity = 115/213 (53.99%), Postives = 155/213 (72.77%), Query Frame = 1
Query:  109 IARAFSSDITPITATLFPGDGIGPEIAESVKQVFRTAEVPVEWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATPIGKGHRSLNLTLRKELNLYANVRPCYSLPGYKTRYDDVNLITIRENTEGEYSGLEHQVVRGVVESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVID 747
            + R F+  +   T TL PGDGIGPEI+ +V ++F  A+ P++WEE  V     P  +  +  E+ ES+ +NK+GLKGP+ TPI  GH S+NL LRK  +LYANVRPC S+ GYKT Y DVN++TIRENTEGEYSG+EH +V GVV+S+K+IT  AS R+AE+AF YA+ + R  V+A+HKANIM+ +DGLFL+ CREVAE   +I + E+ +D
Sbjct:   23 VTRGFAGGVK--TVTLIPGDGIGPEISAAVMKIFDAAKAPIQWEERNVAAIQGPGGKWMIPPEAKESMDKNKMGLKGPLKTPIAAGHPSMNLLLRKTFDLYANVRPCVSIEGYKTPYHDVNIVTIRENTEGEYSGIEHVIVDGVVQSIKLITEAASKRIAEFAFEYARNNHRSNVTAVHKANIMRMSDGLFLQKCREVAENCKDIKFNEMYLD 233          
BLAST of CN188827 vs. ExPASy Swiss-Prot
Match: IDH3A_PONAB (Isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial OS=Pongo abelii GN=IDH3A PE=2 SV=1)

HSP 1 Score: 238.81 bits (608), Expect = 2.391e-62
Identity = 115/213 (53.99%), Postives = 155/213 (72.77%), Query Frame = 1
Query:  109 IARAFSSDITPITATLFPGDGIGPEIAESVKQVFRTAEVPVEWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATPIGKGHRSLNLTLRKELNLYANVRPCYSLPGYKTRYDDVNLITIRENTEGEYSGLEHQVVRGVVESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVID 747
            + R F+  +   T TL PGDGIGPEI+ +V ++F  A+ P++WEE  V     P  +  +  E+ ES+ +NK+GLKGP+ TPI  GH S+NL LRK  +LYANVRPC S+ GYKT Y DVN++TIRENTEGEYSG+EH +V GVV+S+K+IT  AS R+AE+AF YA+ + R  V+A+HKANIM+ +DGLFL+ CREVAE   +I + E+ +D
Sbjct:   23 VTRGFTGGVQ--TVTLIPGDGIGPEISAAVMKIFDAAKAPIQWEERNVTAIQGPGGKWMIPSEAKESMDKNKMGLKGPLKTPIAAGHPSMNLLLRKTFDLYANVRPCVSIEGYKTPYTDVNIVTIRENTEGEYSGIEHVIVDGVVQSIKLITEGASKRIAEFAFEYARNNHRSNVTAVHKANIMRMSDGLFLQKCREVAENCKDIKFNEMYLD 233          
The following BLAST results are available for this feature:
BLAST of CN188827 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 147
Match NameE-valueIdentityDescription
IDH5_ARATH7.312e-12090.68Isocitrate dehydrogenase [NAD] catalytic subunit 5... [more]
LEU3_SOLTU2.785e-11192.063-isopropylmalate dehydrogenase, chloroplastic OS=... [more]
IDH6_ARATH1.339e-10578.81Isocitrate dehydrogenase [NAD] catalytic subunit 6... [more]
IDH3A_DROME1.184e-6955.27Probable isocitrate dehydrogenase [NAD] subunit al... [more]
IDHA_DICDI2.232e-6858.22Isocitrate dehydrogenase [NAD] regulatory subunit ... [more]
IDH2_SCHPO3.688e-6356.44Isocitrate dehydrogenase [NAD] subunit 2, mitochon... [more]
IDH3A_MOUSE4.817e-6354.46Isocitrate dehydrogenase [NAD] subunit alpha, mito... [more]
IDH3A_RAT1.402e-6254.46Isocitrate dehydrogenase [NAD] subunit alpha, mito... [more]
IDH3A_BOVIN1.402e-6253.99Isocitrate dehydrogenase [NAD] subunit alpha, mito... [more]
IDH3A_PONAB2.391e-6253.99Isocitrate dehydrogenase [NAD] subunit alpha, mito... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006N14_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006N14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188827 ID=CN188827; Name=CN188827; organism=Citrus sinensis; type=EST; length=751bp
GCGTTAAGGATCAATCAATGGCAACGCAGCTGCTGAGACGAGCTCCTGGG
AAGCCGATCGCGCCAGATCCTCTCAGCCACAAACCCCAACCCTAATTTAG
CTTTGCCTATAGCCAGGGCCTTCTCCTCCGATATTACTCCGATCACCGCC
ACTCTCTTTCCCGGCGACGGAATCGGCCCCGAGATCGCCGAGTCCGTTAA
ACAGGTATTTAGGACAGCTGAGGTGCCAGTTGAATGGGAGGAGCATTATG
TGGGGACTGAAATAGATCCTAGAACACAAAGTTTTCTGACATGGGAAAGT
TTAGAATCTGTGAGAAGGAACAAGGTGGGCTTGAAAGGGCCTATGGCAAC
ACCAATTGGAAAGGGTCATCGTTCATTGAATCTTACTTTGAGGAAAGAAC
TTAATTTGTATGCCAATGTTAGGCCTTGCTACAGCCTCCCTGGATATAAA
ACTCGCTATGATGATGTGAATCTTATCACTATCCGTGAGAACACAGAAGG
AGAGTACAGTGGACTTGAACATCAAGTGGTGAGAGGTGTGGTTGAAAGTC
TCAAAATCATTACTCGTCAGGCTAGTTTGAGAGTTGCTGAATATGCGTTT
CACTATGCGAAGACACATGGAAGAGAAAGAGTATCTGCAATACACAAAGC
AAATATTATGCAGAAAACTGATGGGCTTTTTTTGAAGTGTTGTCGTGAGG
TTGCCGAGAAGTACCCTGAGATAACATATGAGGAAGTTGTTATCGACAAT
T
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