CN181980

Overview
NameCN181980
Unique NameCN181980
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length309
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN181980_ssr118 microsatellite CN181980_ssr118:118..138. BLAST: Citrus ESTs to Prunus persica proteins V1
CN181980_ssr139 microsatellite CN181980_ssr139:139..153. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN181980 vs. ExPASy Swiss-Prot
Match: MYB44_ARATH (Transcription factor MYB44 OS=Arabidopsis thaliana GN=MYB44 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.007e-15
Identity = 34/51 (66.67%), Postives = 41/51 (80.39%), Query Frame = 2 
Query:  152 RVKGPWSPEEDAVLSLLLSQFGARNWGMIARGIPGRSGLSCRLRWCNQLDP 304
            R+KGPWSPEED  L  L+ ++G RNW +I++ IPGRSG SCRLRWCNQL P
Sbjct:    4 RIKGPWSPEEDEQLRRLVVKYGPRNWTVISKSIPGRSGKSCRLRWCNQLSP 54
The following BLAST results are available for this feature:
BLAST of CN181980 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
MYB44_ARATH1.007e-1566.67Transcription factor MYB44 OS=Arabidopsis thaliana... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_0001M06_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001M06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181980 ID=CN181980; Name=CN181980; organism=Citrus sinensis; type=EST; length=309bp
AGGAAAATCCAGTACAATGAGCGAAAAAAAGGAAGATAGTGTTAGTAAGA
GTCAAAACGACGACGTAAATGCGGCGATTGTAGTGGAGGACTCTTCGGAG
CCTGGAGGAGGTGGCGATGGTGGTGGTGGTGGTGGTGGTAGTAGTAGTAG
TAGAGTGAAGGGGCCGTGGTCGCCGGAGGAGGACGCGGTGCTGAGTCTAT
TACTGAGTCAGTTCGGGGCGAGGAATTGGGGAATGATCGCGCGAGGAATT
CCTGGTCGGTCGGGATTATCGTGCCGCCTTCGTTGGTGTAATCAGCTCGA
CCCTTGCCT
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