CN181978

Overview
NameCN181978
Unique NameCN181978
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length660
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10973 contig Csv1_Contig10973:53..712. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181978 vs. ExPASy Swiss-Prot
Match: B3GTB_ARATH (Probable beta-1,3-galactosyltransferase 11 OS=Arabidopsis thaliana GN=B3GALT11 PE=2 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 3.957e-44
Identity = 95/146 (65.07%), Postives = 110/146 (75.34%), Query Frame = 1
Query:  223 MQSRGSSNKLSSMIARTRISSLLLSMFATFASIYVAGRLWQDAQTRVRLIKELDRITGYGKSAISVDDTLKIIACREQRKKLLELEMQLAAAGQEGFXXXXXXXXXXXXXXXRPLVVIGILTRFGRKNNRDAIRKAWMGTGAALKK 660
            M  +GSS +LSS    +RIS+LLL MFATFAS YVAGRLWQ++QTRV LI ELDR+TG GKSAISVDDTLKIIACREQ+K L  LEM+L++A QEGF               RPLVVIGI+T  G K  RDA+R+AWMGTGA+LKK
Sbjct:    1 MARKGSSIRLSS----SRISTLLLFMFATFASFYVAGRLWQESQTRVHLINELDRVTGQGKSAISVDDTLKIIACREQKKTLAALEMELSSARQEGFVSKSPKLADGTETKKRPLVVIGIMTSLGNKKKRDAVRQAWMGTGASLKK 142          
BLAST of CN181978 vs. ExPASy Swiss-Prot
Match: B3GTA_ARATH (Probable beta-1,3-galactosyltransferase 10 OS=Arabidopsis thaliana GN=B3GALT10 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.501e-14
Identity = 45/126 (35.71%), Postives = 67/126 (53.17%), Query Frame = 1
Query:  283 SLLLSMFATFASIYVAGRLWQDAQTRVRLIKELDRITGYGKSAISVDDTLKIIACREQRKKLLELEMQLAAAGQEGFXXXXXXXXXXXXXXXRPLVVIGILTRFGRKNNRDAIRKAWMGTGAALKK 660
            SL+L+ F+  A +YVAGRLWQDAQ R  L   L          ++V+D L ++ C++  ++++E EM+LA A  +G+               + L VIG+ T FG    R+  R +WM    ALKK
Sbjct:   28 SLILAFFSCLAWLYVAGRLWQDAQYRAALNTVLKMNYDQRPKVLTVEDKLVVLGCKDLERRIVETEMELAQAKSQGY---LKKQKSVSSSGKKMLAVIGVYTGFGSHLKRNKFRGSWMPRDDALKK 150          
BLAST of CN181978 vs. ExPASy Swiss-Prot
Match: B3GT9_ARATH (Probable beta-1,3-galactosyltransferase 9 OS=Arabidopsis thaliana GN=B3GALT9 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 9.505e-14
Identity = 45/145 (31.03%), Postives = 77/145 (53.10%), Query Frame = 1
Query:  226 QSRGSSNKLSSMIARTRISSLLLSMFATFASIYVAGRLWQDAQTRVRLIKELDRITGYGKSAISVDDTLKIIACREQRKKLLELEMQLAAAGQEGFXXXXXXXXXXXXXXXRPLVVIGILTRFGRKNNRDAIRKAWMGTGAALKK 660
            + R  S+K S   ++    S++++ F+  A +YVAGRLWQDA+ RV L   L +        ++VDD L ++ C++  ++++E EM+L  A  +G+               + L VIG+ + FG    R+  R ++M  G AL+K
Sbjct:   13 ERRARSSKFSQSSSKP---SVIMAFFSCVAWLYVAGRLWQDAENRVVLNNILKKSYDQKPKVLTVDDKLMVLGCKDLERRIVETEMELTLAKSQGY---LKNLKSGSSSGKKLLAVIGVYSGFGSHLRRNTFRGSYMPQGDALRK 151          
The following BLAST results are available for this feature:
BLAST of CN181978 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
B3GTB_ARATH3.957e-4465.07Probable beta-1,3-galactosyltransferase 11 OS=Arab... [more]
B3GTA_ARATH2.501e-1435.71Probable beta-1,3-galactosyltransferase 10 OS=Arab... [more]
B3GT9_ARATH9.505e-1431.03Probable beta-1,3-galactosyltransferase 9 OS=Arabi... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_0001M04_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001M04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181978 ID=CN181978; Name=CN181978; organism=Citrus sinensis; type=EST; length=660bp
GAGGCACAACACAACAAAGCTCTCACTTTTTATCAGTTATCAAAATCCAA
CATAAAACCTCCATCAAATCAAACAATAGATCTCATTTACAAAATCTTTA
CAAGAAACCCTCTTAAAACGATCGCCCAAAAAAGTTAAAAATCAACTCTT
TTTTAATCCATCGATACGGAAAAGAGAAAGAAAAGGGCACAAGATTTAAA
GAGAGATAAAAAGAAAAAAAAGATGCAAAGCAGGGGATCGAGTAACAAGC
TTTCCAGCATGATTGCTAGGACCCGGATATCATCTCTATTGCTTTCAATG
TTTGCTACTTTTGCTTCCATTTACGTAGCTGGCAGATTGTGGCAGGATGC
TCAGACCAGAGTTCGTTTGATTAAAGAGCTGGATAGAATCACTGGTTATG
GCAAATCTGCTATATCAGTGGATGATACTCTGAAAATCATAGCATGCAGA
GAGCAACGGAAGAAGTTATTAGAGCTTGAGATGCAGTTGGCTGCGGCTGG
ACAGGAAGGTTTTAAATCAAAGGGCTCAACAGATACAGATGACAAGGATC
CAAAGAAAAGGCCACTAGTTGTGATAGGTATACTAACGAGGTTTGGCCGA
AAAAATAATAGAGATGCAATTCGTAAAGCGTGGATGGGAACTGGTGCAGC
TTTGAAAAAA
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