CN181970

Overview
NameCN181970
Unique NameCN181970
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length746
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN181970_ssr524 microsatellite CN181970_ssr524:524..535. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1759 contig Csv1_Contig1759:3..748. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN181970 vs. ExPASy Swiss-Prot
Match: H1_PEA (Histone H1 OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.883e-13
Identity = 47/95 (49.47%), Postives = 54/95 (56.84%), Query Frame = 2 
Query:   98 MATEDPVVDTETLPQPESAEPV------VEDKPSSKAGKGKTSKEXXXXXXXXXXXXXXXXXXXXYEEMIKDAIVTLKEKTGSSQYAIAKFIEEK 364
            MATE+P+V  ET+P+P   EP       V +K   KA   KT K+                    YEEMIKDAIV+LKEK GSSQYAIAKFIEEK
Sbjct:    1 MATEEPIVAVETVPEPIVTEPTTITEPEVPEKEEPKAEVEKT-KKAKGSKPKKASKPRNPASHPTYEEMIKDAIVSLKEKNGSSQYAIAKFIEEK 94
[Close]
BLAST of CN181970 vs. ExPASy Swiss-Prot
Match: H1_SOLLC (Histone H1 OS=Solanum lycopersicum PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.109e-11
Identity = 41/89 (46.07%), Postives = 52/89 (58.43%), Query Frame = 2 
Query:   98 MATEDPVVDTETLPQPESAEPVVEDKPSSKAGKGKTSKEXXXXXXXXXXXXXXXXXXXXYEEMIKDAIVTLKEKTGSSQYAIAKFIEEK 364
            MATE+PV+  E + + ++A   V+D+ +  A  GK  KE                    Y EMIKDAIVTLKE+TGSSQ+AI KFIEEK
Sbjct:    1 MATEEPVIVNEVVEE-QAAPETVKDEANPPAKSGKAKKETKAKKPAAPRKRSATPTHPPYFEMIKDAIVTLKERTGSSQHAITKFIEEK 88
The following BLAST results are available for this feature:
BLAST of CN181970 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
H1_PEA5.883e-1349.47Histone H1 OS=Pisum sativum PE=2 SV=1[more]
H1_SOLLC1.109e-1146.07Histone H1 OS=Solanum lycopersicum PE=3 SV=1[more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_0001L23_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001L23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181970 ID=CN181970; Name=CN181970; organism=Citrus sinensis; type=EST; length=746bp
GAGGGTCCTCCACCACCCGCATTTTTAGATCCAATCTTTCGTTATCTTTC
TTGCTCGCTCTCCACTTCCTAATTTCTGAAACCCAATTCGATTCAAAATG
GCCACTGAAGATCCCGTTGTGGACACGGAGACCCTTCCTCAACCGGAATC
CGCTGAACCGGTGGTAGAGGACAAACCGTCCTCCAAAGCCGGCAAAGGCA
AGACCTCTAAGGAGCCCAAAGCCAAGAAAGCCGCTGCTCCGAGGAAGCCT
AGAAGCCCTCCCTCTCATCCTCCGTATGAAGAGATGATTAAGGATGCAAT
TGTTACTTTGAAAGAGAAGACCGGTTCGAGTCAGTATGCAATTGCCAAAT
TTATTGAGGAGAAGCACAAGCAGTTGCCACCCAACTTTAAGAAGCTGTTG
CTGTTTCATTTGAAGAAGCTTGTGGGTTCCGGAAAGCTCGTGAAGGTTAA
GGGTTCCTTCAAGCTTCCATCGGCTAGGGCTGCCGTTTCTAAGCCGGCTG
CATCTGTTCCTGCTTCTCCGGCTAAGAAGAAGAAGCCGGTTGCTGCTGGT
AAGGCCAAAACTAAGGCGGCGCCCTCCAAGGCCAAAGCTCCACCTAAGGC
TAAGGCTAAGGCACCAGCTAAAGCTCCGGCCAAGGCTAAGCCAGCTGCTA
AACCCAAAGCCAAGCCGGCTGCCAAGACTAAGGCGGTGGCTGCCAAGACT
AAAGCGGCTCCGGCTAAAGCTAAGCCTGCTGCCAAACCGAAAGCTG
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