CN181967

Overview
NameCN181967
Unique NameCN181967
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length716
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6864 contig Csv1_Contig6864:194..909. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CN181967 vs. ExPASy Swiss-Prot
Match: TT12_ARATH (Protein TRANSPARENT TESTA 12 OS=Arabidopsis thaliana GN=TT12 PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.249e-25
Identity = 61/135 (45.19%), Postives = 83/135 (61.48%), Query Frame = -2 
Query:  311 VTLVSFVISVMAAIIILALRDVISYAFTGGEAVAAAVSDLCPLLALTLILNGIQPVLSGVAVGCGWQTFXXXXXXXXXXXXXXXXGSLLGFYFNLGAKGIWSGMIGGTVMQTLILIWVTFRTDWNKEVQEALKRL 715
            V + + +IS +  +I+L  R  +S AFT    V AAVSDL PLLA+++ LNGIQP+LSGVA+G GWQ                  G +LGF  +LG  GIW GMI G ++QTL LI +T +T+W  EV+ A +R+
Sbjct:  358 VNITTVLISSVLCVIVLVFRVGLSKAFTSDAEVIAAVSDLFPLLAVSIFLNGIQPILSGVAIGSGWQAVVAYVNLVTYYVIGLPIGCVLGFKTSLGVAGIWWGMIAGVILQTLTLIVLTLKTNWTSEVENAAQRV 492
[Close]
BLAST of CN181967 vs. ExPASy Swiss-Prot
Match: YL47_SCHPO (Uncharacterized transporter C323.07c OS=Schizosaccharomyces pombe GN=SPAC323.07c PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.702e-12
Identity = 43/132 (32.58%), Postives = 60/132 (45.45%), Query Frame = -2 
Query:  311 VSFVISVMAAIIILALRDVISYAFTGGEAVAAAVSDLCPLLALTLILNGIQPVLSGVAVGCGWQTFXXXXXXXXXXXXXXXXGSLLGFYFNLGAKGIWSGMIGGTVMQTLILIWVTFRTDWNKEVQEALKRL 706
            ++  IS+    +I   RDV    FT    V A V D+ P+L+L ++ +G+  V  G+  G G Q                     +  YFN G KGIW GMI  +V        V F TDW++ +QEA  RL
Sbjct:  399 LALCISIFDGSLIFCFRDVWGSLFTSDPEVLAVVKDIFPILSLFIVTDGLNAVGGGLLRGTGKQYIGGLISIGSSYLFALPVTVFVVVYFNTGLKGIWCGMILSSVTAITCQFTVLFNTDWHRVLQEARHRL 530
The following BLAST results are available for this feature:
BLAST of CN181967 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
TT12_ARATH1.249e-2545.19Protein TRANSPARENT TESTA 12 OS=Arabidopsis thalia... [more]
YL47_SCHPO2.702e-1232.58Uncharacterized transporter C323.07c OS=Schizosacc... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_0001L22_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001L22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181967 ID=CN181967; Name=CN181967; organism=Citrus sinensis; type=EST; length=716bp
TTAGGAATATAATTTTTCTGTCCACAAAATATGAGTTACATATCTAATGG
ATTTTCATTAATTTGGAAGACCCAAAAAAATAGAAGATTTTATTTGCCAT
ACAGGCAGGCAGCCTTTACATTCTCGGCCATGGACTGAGTAGGCCATATG
ACATGAGGAATTTTTGTCTCCAATCGAGCAAGATCAGAAATTAAGGTCGC
TTGCACTTTTTATTTTGCGAGTTTCGAACCAAGTTCATCGACCTATTTGT
AAATCCTTGCCTCTAATTTCCTCATTCTAGAAGAGGCTTTTTCTTGTCCT
CCCACCTATCCAATCTCTTCAGGGCTTCTTGTACCTCTTTATTCCAGTCT
GTTCGAAATGTCACCCATATCAGAATTAAAGTTTGCATCACCGTGCCGCC
AATCATCCCAGACCATATTCCCTTAGCACCAAGATTGAAGTAGAAACCGA
GAAGTGAACCTACTGGAACCCCAACGACGTAATAGCATCCCACGTTCACA
TACGCCACAAATGTTTGCCATCCGCACCCAACAGCCACACCGGACAAGAC
AGGCTGGATGCCGTTAAGAATCAGGGTCAAAGCAAGAAGCGGACAGAGGT
CGGAGACGGCTGCGGCAACCGCTTCGCCTCCAGTGAAGGCGTAGCTGATG
ACATCACGTAGGGCTAGAATGATTATCGCCGCCATCACGGAGATCACGAA
GGAAACTAACGTCACC
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